메뉴 건너뛰기




Volumn 31, Issue 24, 2003, Pages 7247-7254

Discovery and characterization of a thermostable bacteriophage RNA ligase homologous to T4 RNA ligase 1

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; COMPLEMENTARY DNA; POLYDEOXYRIBONUCLEOTIDE SYNTHASE; RNA LIGASE; RNA LIGASE 1; SINGLE STRANDED DNA; UNCLASSIFIED DRUG;

EID: 0347519276     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg914     Document Type: Article
Times cited : (34)

References (33)
  • 1
    • 0022529089 scopus 로고
    • The isolation and characterization of bacteriophages infecting obligately thermophilic strains of Bacillus
    • Sharp,R.J., Ahmad,S.I., Munster,A., Dowsett,B. and Atkinson,T. (1986) The isolation and characterization of bacteriophages infecting obligately thermophilic strains of Bacillus. J. Gen. Microbiol., 132, 1709-1722.
    • (1986) J. Gen. Microbiol. , vol.132 , pp. 1709-1722
    • Sharp, R.J.1    Ahmad, S.I.2    Munster, A.3    Dowsett, B.4    Atkinson, T.5
  • 2
    • 0034608829 scopus 로고    scopus 로고
    • SNDV, a novel virus of the extremely thermophilic and acidophilic archaeon Sulfolobus
    • Arnold,H.P., Ziese,U. and Zillig,W. (2000) SNDV, a novel virus of the extremely thermophilic and acidophilic archaeon Sulfolobus. Virology, 272, 409-416.
    • (2000) Virology , vol.272 , pp. 409-416
    • Arnold, H.P.1    Ziese, U.2    Zillig, W.3
  • 3
    • 0000353077 scopus 로고
    • Rhodothermus marinus gen. Nov., sp. Nov., a thermophilic halophilic bacterium from submarine hot springs in Iceland
    • Alfredsson,G.A., Kristjánsson,J.K., Hjörleifsdóttir,S. and Stetter,K.O. (1988) Rhodothermus marinus gen. Nov., sp. Nov., a thermophilic halophilic bacterium from submarine hot springs in Iceland. J. Gen. Microbiol., 134, 299-306.
    • (1988) J. Gen. Microbiol. , vol.134 , pp. 299-306
    • Alfredsson, G.A.1    Kristjánsson, J.K.2    Hjörleifsdóttir, S.3    Stetter, K.O.4
  • 6
    • 0015408606 scopus 로고
    • Purification and properties of bacteriophage T4-induced RNA ligase
    • Silber,R., Malathi,V.G. and Hurwitz,J. (1972) Purification and properties of bacteriophage T4-induced RNA ligase. Proc. Natl Acad. Sci. USA, 69, 3009-3013.
    • (1972) Proc. Natl Acad. Sci. USA , vol.69 , pp. 3009-3013
    • Silber, R.1    Malathi, V.G.2    Hurwitz, J.3
  • 7
    • 0017333769 scopus 로고
    • Bacteriophage T4 RNA ligase. Reaction intermediates and interaction of substrates
    • Sugino,A., Snoper,T.J. and Cozzarelli,N.R. (1977) Bacteriophage T4 RNA ligase. Reaction intermediates and interaction of substrates. J. Biol. Chem., 252, 1732-1738.
    • (1977) J. Biol. Chem. , vol.252 , pp. 1732-1738
    • Sugino, A.1    Snoper, T.J.2    Cozzarelli, N.R.3
  • 8
    • 0021253053 scopus 로고
    • Genetic and physiological studies of an Escherichia coli locus that restricts polynucleotide kinase- and RNA ligase-deficient mutants of bacteriophage T4
    • Jabbar,M.A. and Snyder,L. (1984) Genetic and physiological studies of an Escherichia coli locus that restricts polynucleotide kinase- and RNA ligase-deficient mutants of bacteriophage T4. J. Virol., 51, 522-529.
    • (1984) J. Virol. , vol.51 , pp. 522-529
    • Jabbar, M.A.1    Snyder, L.2
  • 9
    • 0023041963 scopus 로고
    • Phage and host genetic determinants of the specific anticodon loop cleavages in bacteriophage T4-infected Escherichia coli CTr5X
    • Kaufmann,G., David,M., Borasio,G.D., Teichmann,A., Paz,A. and Amitsur,M. (1986) Phage and host genetic determinants of the specific anticodon loop cleavages in bacteriophage T4-infected Escherichia coli CTr5X. J. Mol. Biol., 188, 15-22.
    • (1986) J. Mol. Biol. , vol.188 , pp. 15-22
    • Kaufmann, G.1    David, M.2    Borasio, G.D.3    Teichmann, A.4    Paz, A.5    Amitsur, M.6
  • 10
    • 0023388202 scopus 로고
    • Bacteriophage T4 anticodon nuclease, polynucleotide kinase and RNA ligase reprocess the host lysine tRNA
    • Amitsur,M., Levitz,R. and Kaufmann,G. (1987) Bacteriophage T4 anticodon nuclease, polynucleotide kinase and RNA ligase reprocess the host lysine tRNA. EMBO J., 6, 2499-2503.
    • (1987) EMBO J. , vol.6 , pp. 2499-2503
    • Amitsur, M.1    Levitz, R.2    Kaufmann, G.3
  • 11
    • 0028293824 scopus 로고
    • The Escherichia coli prr region encodes a functional type IC DNA restriction system closely integrated with an anticodon nuclease gene
    • Tyndall,C., Meister,J. and Bickle,T.A. (1994) The Escherichia coli prr region encodes a functional type IC DNA restriction system closely integrated with an anticodon nuclease gene. J. Mol. Biol., 237, 266-274.
    • (1994) J. Mol. Biol. , vol.237 , pp. 266-274
    • Tyndall, C.1    Meister, J.2    Bickle, T.A.3
  • 12
    • 0034682503 scopus 로고    scopus 로고
    • A cytotoxic ribonuclease which specifically cleaves four isoaccepting arginine tRNAs at their anticodon loops
    • Tomita,K., Ogawa,T., Uozumi,T., Watanabe,K. and Masaki,H. (2000) A cytotoxic ribonuclease which specifically cleaves four isoaccepting arginine tRNAs at their anticodon loops. Proc. Natl Acad. Sci. USA, 97, 8278-8283.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 8278-8283
    • Tomita, K.1    Ogawa, T.2    Uozumi, T.3    Watanabe, K.4    Masaki, H.5
  • 13
    • 0027381917 scopus 로고
    • Mapping the 5′ and 3′ ends of Tetrahymena thermophila mRNAs using RNA ligase mediated amplification of cDNA ends (RLM-RACE)
    • Liu,X. and Gorovsky,M.A. (1993) Mapping the 5′ and 3′ ends of Tetrahymena thermophila mRNAs using RNA ligase mediated amplification of cDNA ends (RLM-RACE). Nucleic Acids Res., 21, 4954-4960.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 4954-4960
    • Liu, X.1    Gorovsky, M.A.2
  • 14
    • 0028213438 scopus 로고
    • Oligo-capping: A simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides
    • Maruyama,K. and Sugano,S. (1994) Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. Gene, 138, 171-174.
    • (1994) Gene , vol.138 , pp. 171-174
    • Maruyama, K.1    Sugano, S.2
  • 15
    • 0029868595 scopus 로고    scopus 로고
    • Single-stranded DNA ligation by T4 RNA ligase for PCR cloning of 5′-noncoding fragments and coding sequence of a specific gene
    • Zhang,X.H. and Chiang,V.L. (1996) Single-stranded DNA ligation by T4 RNA ligase for PCR cloning of 5′-noncoding fragments and coding sequence of a specific gene. Nucleic Acids Res., 24, 990-991.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 990-991
    • Zhang, X.H.1    Chiang, V.L.2
  • 16
    • 0022999793 scopus 로고
    • Ligation of single-stranded oligodeoxyribonucleotides by T4 RNA ligase
    • Tessier,D.C., Brousseau,R. and Vernet,T. (1986) Ligation of single-stranded oligodeoxyribonucleotides by T4 RNA ligase. Anal. Biochem., 158, 171-178.
    • (1986) Anal. Biochem. , vol.158 , pp. 171-178
    • Tessier, D.C.1    Brousseau, R.2    Vernet, T.3
  • 17
    • 0028833689 scopus 로고
    • Enzymatically produced composite primers: An application of T4 RNA ligase-coupled primers to PCR
    • Kaluz,S., Kaluzova,M. and Flint,A.P. (1995) Enzymatically produced composite primers: an application of T4 RNA ligase-coupled primers to PCR. Biotechniques, 19, 182-186.
    • (1995) Biotechniques , vol.19 , pp. 182-186
    • Kaluz, S.1    Kaluzova, M.2    Flint, A.P.3
  • 18
    • 0030804068 scopus 로고    scopus 로고
    • Fluorescence-, isotope- or biotin-labeling of the 5′-end of single-stranded DNA/RNA using T4 RNA ligase
    • Kinoshita,Y., Nishigaki,K. and Husimi,Y. (1997) Fluorescence-, isotope- or biotin-labeling of the 5′-end of single-stranded DNA/RNA using T4 RNA ligase. Nucleic Acids Res., 25, 3747-3748.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3747-3748
    • Kinoshita, Y.1    Nishigaki, K.2    Husimi, Y.3
  • 20
    • 0021377916 scopus 로고
    • Sequence and cloning of bacteriophage T4 gene 63 encoding RNA ligase and tail fibre attachment activities
    • Rand,K.N. and Gait,M.J. (1984) Sequence and cloning of bacteriophage T4 gene 63 encoding RNA ligase and tail fibre attachment activities. EMBO J., 3, 397-402.
    • (1984) EMBO J. , vol.3 , pp. 397-402
    • Rand, K.N.1    Gait, M.J.2
  • 21
    • 0031929789 scopus 로고    scopus 로고
    • The pnk/pnl gene (ORF 86) of Autographa californica nucleopolyhedrovirus is a non-essential, immediate early gene
    • Durantel,D., Croizier,L., Ayres,M.D., Croizier,G., Possee,R.D. and Lopez-Ferber,M. (1998) The pnk/pnl gene (ORF 86) of Autographa californica nucleopolyhedrovirus is a non-essential, immediate early gene. J. Gen. Virol., 79, 629-637.
    • (1998) J. Gen. Virol. , vol.79 , pp. 629-637
    • Durantel, D.1    Croizier, L.2    Ayres, M.D.3    Croizier, G.4    Possee, R.D.5    Lopez-Ferber, M.6
  • 23
    • 0029056990 scopus 로고
    • RNA capping enzyme and DNA ligase: A superfamily of covalent nucleotidyl transferases
    • Shuman,S. and Schwer,B. (1995) RNA capping enzyme and DNA ligase: a superfamily of covalent nucleotidyl transferases. Mol. Microbiol., 17, 405-410.
    • (1995) Mol. Microbiol. , vol.17 , pp. 405-410
    • Shuman, S.1    Schwer, B.2
  • 24
    • 0034734323 scopus 로고    scopus 로고
    • DNA ligases in the repair and replication of DNA
    • Timson,D.J., Singleton,M.R. and Wigley,D.B. (2000) DNA ligases in the repair and replication of DNA. Mutat. Res., 460, 301-318.
    • (2000) Mutat. Res. , vol.460 , pp. 301-318
    • Timson, D.J.1    Singleton, M.R.2    Wigley, D.B.3
  • 25
    • 0034327406 scopus 로고    scopus 로고
    • Structural and mechanistic conservation in DNA ligases
    • Doherty,A.J. and Suh,S.W. (2000) Structural and mechanistic conservation in DNA ligases. Nucleic Acids Res., 28, 4051-4058.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 4051-4058
    • Doherty, A.J.1    Suh, S.W.2
  • 26
    • 0041529937 scopus 로고    scopus 로고
    • Mutation analysis of bacteriophage T4 RNA ligase 1: Differential functional groups are required for the nucleotidyl transfer and phosphodiester bond formation steps of the ligation reaction
    • Wang,L.K., Ho,C.K., Pei,Y. and Shuman,S. (2003) Mutation analysis of bacteriophage T4 RNA ligase 1: differential functional groups are required for the nucleotidyl transfer and phosphodiester bond formation steps of the ligation reaction. J. Biol. Chem., 278, 29454-29462.
    • (2003) J. Biol. Chem. , vol.278 , pp. 29454-29462
    • Wang, L.K.1    Ho, C.K.2    Pei, Y.3    Shuman, S.4
  • 27
    • 0029938467 scopus 로고    scopus 로고
    • Crystal structure of an ATP-dependent DNA ligase from bacteriophage T7
    • Subramanya,H.S., Doherty,A.J., Ashford,S.R. and Wigley,D.B. (1996) Crystal structure of an ATP-dependent DNA ligase from bacteriophage T7. Cell, 85, 607-615.
    • (1996) Cell , vol.85 , pp. 607-615
    • Subramanya, H.S.1    Doherty, A.J.2    Ashford, S.R.3    Wigley, D.B.4
  • 28
    • 0034161570 scopus 로고    scopus 로고
    • Crystal structure of NAD(+)-dependent DNA ligase: Modular architecture and functional implications
    • Lee,J.Y., Chang,C., Song,H.K., Moon,J., Yang,J.K., Kim,H.K., Kwon,S.T. and Suh,S.W. (2000) Crystal structure of NAD(+)-dependent DNA ligase: modular architecture and functional implications. EMBO J., 19, 1119-1129.
    • (2000) EMBO J. , vol.19 , pp. 1119-1129
    • Lee, J.Y.1    Chang, C.2    Song, H.K.3    Moon, J.4    Yang, J.K.5    Kim, H.K.6    Kwon, S.T.7    Suh, S.W.8
  • 29
    • 0018116735 scopus 로고
    • T4 RNA Ligase joins 2′-deoxyribonucleoside 3′,5′-bisphosphates to oligodeoxyribonucleotides
    • Hinton,D.M., Baez,J.A. and Gumport,R.I. (1978) T4 RNA Ligase joins 2′-deoxyribonucleoside 3′,5′-bisphosphates to oligodeoxyribonucleotides. Biochemistry, 17, 5091-5097.
    • (1978) Biochemistry , vol.17 , pp. 5091-5097
    • Hinton, D.M.1    Baez, J.A.2    Gumport, R.I.3
  • 30
    • 0019328550 scopus 로고
    • T4 ribonucleic acid ligase joins single-strand oligo(deoxyribonucleotides)
    • McCoy,M.I. and Gumport,R.I. (1980) T4 ribonucleic acid ligase joins single-strand oligo(deoxyribonucleotides). Biochemistry, 19, 635-642.
    • (1980) Biochemistry , vol.19 , pp. 635-642
    • McCoy, M.I.1    Gumport, R.I.2
  • 31
    • 0028050350 scopus 로고
    • Rapid evolution of a protein in vitro by DNA shuffling
    • Stemmer,W.P. (1994) Rapid evolution of a protein in vitro by DNA shuffling. Nature, 370, 389-391.
    • (1994) Nature , vol.370 , pp. 389-391
    • Stemmer, W.P.1
  • 32
    • 0032524092 scopus 로고    scopus 로고
    • Oligoribonucleotide circularization by 'template-mediated' ligation with T4 RNA ligase: Synthesis of circular hammerhead ribozymes
    • Wang,L. and Ruffner,D.E. (1998) Oligoribonucleotide circularization by 'template-mediated' ligation with T4 RNA ligase: synthesis of circular hammerhead ribozymes. Nucleic Acids Res., 26, 2502-2504.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 2502-2504
    • Wang, L.1    Ruffner, D.E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.