Topological Effects on the Electrophoretic Mobility of Rigid Rodlike DNA in Polyacrylamide Gels

Biopolymers

Volumn 70, Issue 4, 2003, Pages 471-481

  Heuer, Daniel M ^a,b   Saha, Sourav ^b   Archer, Lynden A ^b  

^a Cornell University   (United States)

^b Department of Obstetrics Gynecology   (United States)

Author keywords

Branched DNA; DNA topology; Gel electrophoresis; Rigid rod; Star polymers

Indexed keywords

COPOLYMERIZATION; DNA; ELECTROPHORESIS; HYDROGELS; MOLECULAR WEIGHT; TOPOLOGY;

MOBILITY DATA;

BIOPOLYMERS;

DNA;

ARTICLE; DNA STRUCTURE; ELECTRON MICROSCOPY; ELECTROPHORETIC MOBILITY; MOLECULAR MODEL; MOLECULAR WEIGHT; POLYACRYLAMIDE GEL ELECTROPHORESIS; STRUCTURE ANALYSIS;

DNA; ELECTROPHORESIS, POLYACRYLAMIDE GEL; MODELS, CHEMICAL;

EID: 0347481195     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/bip.10531     Document Type: Article

References (39)

1. Ogston, A. G. Trans Faraday Soc 1958, 54, 1754-1757.
2. Lumpkin, O. J.; Zimm, B. H. Biopolymers 1982, 21, 2315-2316.
3. Lumpkin, O. J.; Dejardin, P.; Zimm, B. H. Biopolymers 1985, 24, 1573-1593.
4. Slater, G. W.; Noolandi, J. Phys Rev Lett 1985, 55, 1579-1582.
5. Ferguson, K. A. Metabolism 1964, 13, 985-1002.
6. Rodbard, D.; Chrambach, A. Proc Natl Acad Sci USA 1970, 65, 970-977.
7. Stellwagen, N. C. Biochemistry 1983, 22, 6180-6185.
8. Stellwagen, N. C.; Weers, B.; Lu, Y. Biopolymers 2002, 61, 261-275.
9. deGennes, P. G. Scaling Concepts in Polymer Physics; Cornell University Press: Ithaca, New York, 1979.
10. Small, P. A. Adv Polym Sci 1975, 18, 1-60.
11. Klein, J.; Flethcher, D.; Fetters, L. J. Nature (London) 1983, 304, 526-527.
12. Heuer, D. M.; Saha, S.; Archer, L. A. Electrophoresis, to appear.
13. Seeman, N. C.; Chen, J. H.; Kallenbach, N. R. Electrophoresis 1989, 10, 345-354.
14. Seeman, N. C. J Theor Biol 1982, 99, 237-247.
15. Seeman, N. C.; Kallenbach, N. R. Biophys J 1983, 44, 201-209.
16. Kallenbach, N. R.; Ma, R. I.; Seeman, N. C. Nature 1983, 305, 829-831.
17. Wang, Y.; Mueller, J. E.; Kemper, B.; Seeman, N. C. Biochemistry 1991, 30, 5667-5674.
18. Petrillo, M. L.; Newton, C. J.; Cunningham, R. P.; Ma, R.; Kallenbach, N. R.; Seeman, N. C. Biopolymers 1988, 27, 1337-1352.
19. Lilley, D. M. J.; Clegg, R. M. Annu Rev Bioph Biom 1993, 22, 299-328.
20. Cooper, J. P.; Hagerman, P. J. J Mol Biol 1987, 198, 711-719.
21. Cooper, J. P.; Hagerman, P. J. Proc Natl Acad Sci USA 1989, 86, 7336-7340.
22. Lilley, D. M. J.; Clegg, R. M. Q Rev Biophys 1993, 26, 131-175.
23. Smisek, D. L.; Hoagland, D. A. Science 1990, 248, 1221-1223.
24. Fischer, S. G.; Lerman, L. S. Proc Natl Acad Sci USA 1980, 77, 4420-4424.
25. Fischer, S. G.; Lerman, L. S. Proc Natl Acad Sci USA 1983, 80, 1579-1583.
26. Myers, R. M.; Lumelsky, N.; Lerman, L. S.; Maniatis, T. Nature 1985, 313, 495-498.
27. Holliday, R. Genet Res 1964, 5, 282-304.
28. Lee, C. S.; Davis, R. W.; Davison, N. J Mol Biol 1970, 48, 1-22.
29. Sha, R.; Liu, F.; Millar, D. P.; Seeman, N. C. Chem Biol 2000, 7, 743-751.
30. Mallam, S.; Horkay, F.; Hecht, A.; Geissler, E. Macromolecules 1989, 22, 3356-3361.
31. Park, I. H.; Johnson, C. S., Jr.; Gabriel, D. A. Macromoolecules 1990, 23, 1548-1553.
32. Weiss, N.; Van Vliet, T.; Silberberg, A. J Polym Sci 1979, 17, 2229-2240.
33. Joosten, J. G. H.; McCarthy, J. L.; Pusey, P. N. Macromolecules 1991, 24, 6690-6699.
34. Stellwagen, N. C. Electrophoresis 1997, 18, 34-44.
35. Allison, S. A.; Li, Z.; Reed, D.; Stellwagen, N. C. Electrophoresis 2002, 23, 2678-2689.
36. Hsu, T.-P.; Cohen, C. Polymer 1984, 25, 1419-1423.
37. Fawcett, J. A.; Morris, C. J. O. R. Sep Sci 1966, 1, 9-26.
38. Holmes, D. L.; Stellwagen, N. C. Electrophoresis 1991, 12, 612-619.
39. Van Winkle, D. H.; Beheshti, A.; Rill, R. L. Electrophoresis 2002, 23, 15-19.