-
1
-
-
36849126204
-
Studies in molecular dynamics. I: General method
-
Alder, B.J. and Wainwright, T.E. 1959. Studies in molecular dynamics, I: General method. J. Chem. Phys. 31: 459-466.
-
(1959)
J. Chem. Phys.
, vol.31
, pp. 459-466
-
-
Alder, B.J.1
Wainwright, T.E.2
-
2
-
-
0032506114
-
Propagating structure of Alzheimer's β-amyloid(10-35) is parallel β-sheet with residues in exact register
-
Benzinger, T.L.S., Gregory, D.M., Burkoth, T.S., Miller-Auer, H., Lynn, D.G., Botto, R.E., and Meredith, S.C. 1998. Propagating structure of Alzheimer's β-amyloid(10-35) is parallel β-sheet with residues in exact register. Proc. Natl. Acad. Sci. 95: 13407-13412.
-
(1998)
Proc. Natl. Acad. Sci.
, vol.95
, pp. 13407-13412
-
-
Benzinger, T.L.S.1
Gregory, D.M.2
Burkoth, T.S.3
Miller-Auer, H.4
Lynn, D.G.5
Botto, R.E.6
Meredith, S.C.7
-
3
-
-
0034724375
-
Two-dimensional structure of β-amyloid(10-35) fibrils
-
-. 2000. Two-dimensional structure of β-amyloid(10-35) fibrils. Biochemistry 39: 3491-3499.
-
(2000)
Biochemistry
, vol.39
, pp. 3491-3499
-
-
-
4
-
-
41849083678
-
Dynamics at solid liquid transition-experiments at the freezing-point
-
Bilgram, J.H. 1987. Dynamics at solid liquid transition-experiments at the freezing-point. Phys. Rep. 153: 1-89.
-
(1987)
Phys. Rep.
, vol.153
, pp. 1-89
-
-
Bilgram, J.H.1
-
5
-
-
0031056829
-
Instability, unfolding and aggregation of human lysozyme variants underlying amyloid fibrillogenesis
-
Booth, D.R., Sunde, M., Bellotti, V., Robinson, C.V., Hutchinson, W.L., Fraser, P.E., Hawkins, P.N., Dobson, C.M., Radford, S.E., Blake, C.C.F., et al. 1997. Instability, unfolding and aggregation of human lysozyme variants underlying amyloid fibrillogenesis. Nature 385: 787-793.
-
(1997)
Nature
, vol.385
, pp. 787-793
-
-
Booth, D.R.1
Sunde, M.2
Bellotti, V.3
Robinson, C.V.4
Hutchinson, W.L.5
Fraser, P.E.6
Hawkins, P.N.7
Dobson, C.M.8
Radford, S.E.9
Blake, C.C.F.10
-
6
-
-
0035151879
-
Competition between protein folding and aggregation: A three-dimensional lattice-model simulation
-
Bratko, D. and Blanch, H.W. 2001. Competition between protein folding and aggregation: A three-dimensional lattice-model simulation. J. Chem. Phys. 114: 561-569.
-
(2001)
J. Chem. Phys.
, vol.114
, pp. 561-569
-
-
Bratko, D.1
Blanch, H.W.2
-
7
-
-
0032486766
-
C-terminal PEG blocks the irreversible step in β-amyloid(10-35) fibrillogenesis
-
Burkoth, T.S., Benzinger, T.L.S., Jones, D.N.M., Hallenga, K., Meredith, S.C., and Lynn, D.G. 1998. C-terminal PEG blocks the irreversible step in β-amyloid(10-35) fibrillogenesis. J. Am. Chem. Soc. 120: 7655-7656.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 7655-7656
-
-
Burkoth, T.S.1
Benzinger, T.L.S.2
Jones, D.N.M.3
Hallenga, K.4
Meredith, S.C.5
Lynn, D.G.6
-
8
-
-
36449000646
-
Transition states and folding dynamics of proteins and heteropolymers
-
Chan, H.S. and Dill, K.A. 1994. Transition states and folding dynamics of proteins and heteropolymers. J. Chem. Phys. 100: 9238-9257.
-
(1994)
J. Chem. Phys.
, vol.100
, pp. 9238-9257
-
-
Chan, H.S.1
Dill, K.A.2
-
9
-
-
0033616575
-
Designing conditions for in vitro formation of amyloid protofilaments and fibrils
-
Chiti, F., Webster, P., Taddei, N., Clark, A., Stefani, M., Ramponi, G., and Dobson, C.M. 1999. Designing conditions for in vitro formation of amyloid protofilaments and fibrils. Proc. Natl. Acad. Sci. 96: 3590-3594.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 3590-3594
-
-
Chiti, F.1
Webster, P.2
Taddei, N.3
Clark, A.4
Stefani, M.5
Ramponi, G.6
Dobson, C.M.7
-
10
-
-
0026556822
-
Phase separation inhibitors and prevention of selenite cataract
-
Clark, J. and Steele, J. 1992. Phase separation inhibitors and prevention of selenite cataract. Proc. Natl. Acad. Sci. 89: 1720-1724.
-
(1992)
Proc. Natl. Acad. Sci.
, vol.89
, pp. 1720-1724
-
-
Clark, J.1
Steele, J.2
-
11
-
-
0028966781
-
Modeling protein stability as heteropolymer collapse
-
Dill, K.A. and Stigter, D. 1995. Modeling protein stability as heteropolymer collapse. Adv. Protein Chem. 46: 59-104.
-
(1995)
Adv. Protein Chem.
, vol.46
, pp. 59-104
-
-
Dill, K.A.1
Stigter, D.2
-
12
-
-
0036228167
-
Exploring protein aggregation and self-propagation using lattice models: Phase diagram and kinetics
-
Dima, R.I. and Thirumalai, D. 2002. Exploring protein aggregation and self-propagation using lattice models: Phase diagram and kinetics. Protein Sci. 11: 1036-1049.
-
(2002)
Protein Sci.
, vol.11
, pp. 1036-1049
-
-
Dima, R.I.1
Thirumalai, D.2
-
13
-
-
0032443390
-
Discrete molecular dynamics studies of the folding of a protein-like model
-
Dokholyan, N.V., Buldyrev, S.V., Stanley, H.E., and Shakhnovich, E.I. 1998. Discrete molecular dynamics studies of the folding of a protein-like model. Fold. Des. 3: 577-587.
-
(1998)
Fold. Des.
, vol.3
, pp. 577-587
-
-
Dokholyan, N.V.1
Buldyrev, S.V.2
Stanley, H.E.3
Shakhnovich, E.I.4
-
14
-
-
0034628914
-
Identifying the protein folding nucleus using molecular dynamics
-
-. 2000. Identifying the protein folding nucleus using molecular dynamics. J. Mol. Biol. 296: 1183-1188.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 1183-1188
-
-
-
15
-
-
0025276708
-
Sickle cell hemoglobin polymerization
-
Eaton, W.A. and Hofrichter, J. 1990. Sickle cell hemoglobin polymerization. Adv. Protein Chem. 40: 63-279.
-
(1990)
Adv. Protein Chem.
, vol.40
, pp. 63-279
-
-
Eaton, W.A.1
Hofrichter, J.2
-
16
-
-
0030024717
-
In vitro growth of Alzheimer's disease β-amyloid plaques displays first-order kinetics
-
Esler, W.P., Stimsom E.R., Ghilardi, J.R., Vinters, H.V., Lee, J.P., Mantyh, P.W., and Maggio, J.E. 1996. In vitro growth of Alzheimer's disease β-amyloid plaques displays first-order kinetics. Biochemistry 35: 749-757.
-
(1996)
Biochemistry
, vol.35
, pp. 749-757
-
-
Esler, W.P.1
Stimsom, E.R.2
Ghilardi, J.R.3
Vinters, H.V.4
Lee, J.P.5
Mantyh, P.W.6
Maggio, J.E.7
-
17
-
-
0033863220
-
Activation barriers to structural transition determine deposition rates of Alzheimer's disease Aβ amyloid
-
Esler, W.P., Felix, A.M., Stimson, E.R., Lachenmann, M.J., Ghilardi, J.R., Lu, Y., Vinters, H.V., Mantyh, P.W., Lee, J.P., and Maggio, J.E. 2000. Activation barriers to structural transition determine deposition rates of Alzheimer's disease Aβ amyloid. J. Struct. Biol. 130: 174-183.
-
(2000)
J. Struct. Biol.
, vol.130
, pp. 174-183
-
-
Esler, W.P.1
Felix, A.M.2
Stimson, E.R.3
Lachenmann, M.J.4
Ghilardi, J.R.5
Lu, Y.6
Vinters, H.V.7
Mantyh, P.W.8
Lee, J.P.9
Maggio, J.E.10
-
18
-
-
33646987405
-
Optimized Monte Carlo data analysis
-
Ferrenberg, A.M. and Swendsen, R.H. 1989. Optimized Monte Carlo data analysis. Phys. Rev. Lett. 63: 1195-1197.
-
(1989)
Phys. Rev. Lett.
, vol.63
, pp. 1195-1197
-
-
Ferrenberg, A.M.1
Swendsen, R.H.2
-
19
-
-
0031932169
-
Protein aggregation: Folding aggregates, inclusion bodies and amyloid
-
Fink, A.L. 1998. Protein aggregation: Folding aggregates, inclusion bodies and amyloid. Fold. Des. 3: R9-R23.
-
(1998)
Fold. Des.
, vol.3
-
-
Fink, A.L.1
-
20
-
-
0025729748
-
Morphology and antibody recognition of synthetic β-amyloid peptides
-
Fraser, P.E., Duffy, L.K., O'Malley, M.B., Nguyen, J.T., Inouye, H., and Kirschner, D.A. 1991a. Morphology and antibody recognition of synthetic β-amyloid peptides. J. Neurosci. Res. 28: 474-485.
-
(1991)
J. Neurosci. Res.
, vol.28
, pp. 474-485
-
-
Fraser, P.E.1
Duffy, L.K.2
O'Malley, M.B.3
Nguyen, J.T.4
Inouye, H.5
Kirschner, D.A.6
-
21
-
-
0025838381
-
pH-dependent structural transitions of Alzheimer amyloid peptides
-
Fraser, P.E., Nguyen, J.T., Surewicz, W.K., and Kirschner, D.A. 1991b. pH-dependent structural transitions of Alzheimer amyloid peptides. Biophys. J. 60: 1190-1201.
-
(1991)
Biophys. J.
, vol.60
, pp. 1190-1201
-
-
Fraser, P.E.1
Nguyen, J.T.2
Surewicz, W.K.3
Kirschner, D.A.4
-
22
-
-
0029939217
-
Light chain cardiomyopathy: Structural analysis of the light chain tissue deposits
-
Gallo, G., Goni, F., Boctor, F., Vidal, R., Kumar, A., Stevens, F.J., Frangione, B., and Ghiso, J. 1996. Light chain cardiomyopathy: Structural analysis of the light chain tissue deposits. Am. J. Pathol. 148: 1397-1406.
-
(1996)
Am. J. Pathol.
, vol.148
, pp. 1397-1406
-
-
Gallo, G.1
Goni, F.2
Boctor, F.3
Vidal, R.4
Kumar, A.5
Stevens, F.J.6
Frangione, B.7
Ghiso, J.8
-
23
-
-
0000355428
-
Respective roles of short range and long range interactions in protein folding
-
Go, N. and Taketomi, H. 1978. Respective roles of short range and long range interactions in protein folding. Proc. Natl. Acad. Sci. 75: 559-563.
-
(1978)
Proc. Natl. Acad. Sci.
, vol.75
, pp. 559-563
-
-
Go, N.1
Taketomi, H.2
-
24
-
-
0018475814
-
Studies on protein folding, unfolding and fluctuations by computer simulation, IV: Hydrophobic interactions
-
-. 1979. Studies on protein folding, unfolding and fluctuations by computer simulation, IV: Hydrophobic interactions. Int. J. Protein Res. 13: 447-461.
-
(1979)
Int. J. Protein Res.
, vol.13
, pp. 447-461
-
-
-
25
-
-
13144259646
-
Amyloid fibril formation by an SH3 domain
-
Guijarro, J.I., Sunde, M., Jones, J.A., Campbell, I.D., and Dobson, C.M. 1998. Amyloid fibril formation by an SH3 domain. Proc. Natl. Acad. Sci. 95: 4224-4228.
-
(1998)
Proc. Natl. Acad. Sci.
, vol.95
, pp. 4224-4228
-
-
Guijarro, J.I.1
Sunde, M.2
Jones, J.A.3
Campbell, I.D.4
Dobson, C.M.5
-
26
-
-
0002689652
-
Thermodynamics of protein folding: A statistical mechanical study of a small all-β protein
-
Guo, Z. and Brooks III, C.L. 1997. Thermodynamics of protein folding: A statistical mechanical study of a small all-β protein. Biopolymers 42: 745-757.
-
(1997)
Biopolymers
, vol.42
, pp. 745-757
-
-
Guo, Z.1
Brooks III, C.L.2
-
27
-
-
0029010695
-
Kinetics of protein folding: Nucleation mechanism, time scales, and pathways
-
Guo, Z., and Thirumalai, D. 1995. Kinetics of protein folding: Nucleation mechanism, time scales, and pathways. Biopolymers 36: 83-102.
-
(1995)
Biopolymers
, vol.36
, pp. 83-102
-
-
Guo, Z.1
Thirumalai, D.2
-
28
-
-
0030601851
-
Kinetics and thermodynamics of folding of a de novo designed four-helix bundle protein
-
-. 1996. Kinetics and thermodynamics of folding of a de novo designed four-helix bundle protein. J. Mol. Biol. 263: 323-343.
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 323-343
-
-
-
29
-
-
0031555024
-
Effect of solvent conditions upon refolding pathways and intermediates for a simple lattice protein
-
Gupta, P. and Hall, C.K. 1997. Effect of solvent conditions upon refolding pathways and intermediates for a simple lattice protein. Biopolymers 42: 399-409.
-
(1997)
Biopolymers
, vol.42
, pp. 399-409
-
-
Gupta, P.1
Hall, C.K.2
-
30
-
-
0031696773
-
Effect of denaturant and protein concentrations upon protein refolding and aggregation: A simple lattice model
-
-. 1998. Effect of denaturant and protein concentrations upon protein refolding and aggregation: A simple lattice model. Protein Sci. 7: 2642-2652.
-
(1998)
Protein Sci.
, vol.7
, pp. 2642-2652
-
-
-
31
-
-
0033150721
-
Computer simulation of the competition between folding and aggregation
-
Gupta, P., Hall, C.K., and Voegler, A. 1999. Computer simulation of the competition between folding and aggregation. Fluid Phase Equilib. 158: 87-93.
-
(1999)
Fluid Phase Equilib.
, vol.158
, pp. 87-93
-
-
Gupta, P.1
Hall, C.K.2
Voegler, A.3
-
32
-
-
0030614627
-
Observation of metastableAβ amyloid protofibrils by atomic force microscopy
-
Harper, J.D., Wong, S.S., Lieber, C.M., and Lansbury Jr., P.T. 1997. Observation of metastableAβ amyloid protofibrils by atomic force microscopy. Chem. Biol. 4: 119-125.
-
(1997)
Chem. Biol.
, vol.4
, pp. 119-125
-
-
Harper, J.D.1
Wong, S.S.2
Lieber, C.M.3
Lansbury Jr., P.T.4
-
33
-
-
0033582587
-
Thermodynamics of model prions and its implications for the problem of prion protein folding
-
Harrison, P.M., Chan, H.S., Prusiner, S.B., and Cohen, F.E. 1999. Thermodynamics of model prions and its implications for the problem of prion protein folding. J. Mol. Biol. 286: 593-606.
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 593-606
-
-
Harrison, P.M.1
Chan, H.S.2
Prusiner, S.B.3
Cohen, F.E.4
-
34
-
-
0035079856
-
Conformational propagation with prion-like characteristics in a simple model of protein folding
-
-. 2001. Conformational propagation with prion-like characteristics in a simple model of protein folding. Protein Sci. 10: 819-835.
-
(2001)
Protein Sci.
, vol.10
, pp. 819-835
-
-
-
35
-
-
0036156804
-
Folding thermodynamics of model four-strand antiparallel β-sheet proteins
-
Jang, H., Hall, C.K., and Zhou, Y. 2002a. Folding thermodynamics of model four-strand antiparallel β-sheet proteins. Biophys. J. 82: 646-659.
-
(2002)
Biophys. J.
, vol.82
, pp. 646-659
-
-
Jang, H.1
Hall, C.K.2
Zhou, Y.3
-
36
-
-
0035997013
-
Protein folding pathways and kinetics: Molecular dynamics simulations β-strand motifs
-
-. 2002b. Protein folding pathways and kinetics: Molecular dynamics simulations β-strand motifs. Biophys. J. 83: 819-835.
-
(2002)
Biophys. J.
, vol.83
, pp. 819-835
-
-
-
37
-
-
0346652459
-
Assembly and kinetic folding pathways of a tetrameric-sheet complex: Molecular dynamics simulations on simplified off-lattice protein models
-
in press
-
-. 2003. Assembly and kinetic folding pathways of a tetrameric-sheet complex: Molecular dynamics simulations on simplified off-lattice protein models. Biophys. J. (in press).
-
(2003)
Biophys. J.
-
-
-
38
-
-
0036304480
-
Towards a consistent modeling of protein thermodynamic and kinetic cooperativity: How applicable is the transition state picture to folding and unfolding?
-
Kaya, H. and Chan, H.S. 2002. Towards a consistent modeling of protein thermodynamic and kinetic cooperativity: How applicable is the transition state picture to folding and unfolding? J. Mol. Biol. 315: 899-909.
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 899-909
-
-
Kaya, H.1
Chan, H.S.2
-
39
-
-
0037459035
-
Solvation effects and driving forces for protein thermodynamic and kinetic cooperativity: How adequate is native-centric topological modeling?
-
-. 2003. Solvation effects and driving forces for protein thermodynamic and kinetic cooperativity: How adequate is native-centric topological modeling? J. Mol. Biol. 326: 911-931.
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 911-931
-
-
-
40
-
-
0029981197
-
Alternative conformations of amyloidogenic proteins govern their behavior
-
Kelly, J.W. 1996. Alternative conformations of amyloidogenic proteins govern their behavior. Curr. Opin. Struct. Biol. 6: 11-17.
-
(1996)
Curr. Opin. Struct. Biol.
, vol.6
, pp. 11-17
-
-
Kelly, J.W.1
-
41
-
-
0035957228
-
Partially folded intermediates as critical precursors of light chain amyloid fibrils and amorphous aggregates
-
Khurana, R., Gillespie, J.R., Talapatra, A., Minert, L.J., Ionescu-Zanetti, C., Millett, I., and Fink, A.L. 2001. Partially folded intermediates as critical precursors of light chain amyloid fibrils and amorphous aggregates. Biochemistry 40: 3525-3535.
-
(2001)
Biochemistry
, vol.40
, pp. 3525-3535
-
-
Khurana, R.1
Gillespie, J.R.2
Talapatra, A.3
Minert, L.J.4
Ionescu-Zanetti, C.5
Millett, I.6
Fink, A.L.7
-
42
-
-
0036708168
-
Paradigm shifts in Alzheimer's disease and other neurodegenerative disorders: The emerging role of oligomeric assemblies
-
Kirkitadze, M.D., Bitan, G., and Teplow, D.B. 2002. Paradigm shifts in Alzheimer's disease and other neurodegenerative disorders: The emerging role of oligomeric assemblies. J. Neurosci. Res. 69: 567-577.
-
(2002)
J. Neurosci. Res.
, vol.69
, pp. 567-577
-
-
Kirkitadze, M.D.1
Bitan, G.2
Teplow, D.B.3
-
43
-
-
0000671822
-
Computer design of idealized Β-motifs
-
Kolinski, A., Galazka, W., and Skolnick, J. 1995. Computer design of idealized Β-motifs. J. Chem. Phys. 103: 10286-10297.
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 10286-10297
-
-
Kolinski, A.1
Galazka, W.2
Skolnick, J.3
-
44
-
-
0032764074
-
Dynamics and themxodynamics of Β-hairpin assembly: Insights from various simulation techniques
-
Kolinski, A., Ilkowski, B., and Skolnick, J. 1999. Dynamics and themxodynamics of Β-hairpin assembly: Insights from various simulation techniques. Biophys. J. 77: 2942-2952.
-
(1999)
Biophys. J.
, vol.77
, pp. 2942-2952
-
-
Kolinski, A.1
Ilkowski, B.2
Skolnick, J.3
-
45
-
-
0033616587
-
In situ atomic force microscopy study of Alzheimer's β-amyloid peptide on different substrates: New insights into mechanism of β-sheet formation
-
Kowalewski, T. and Holtzman, D.M. 1999. In situ atomic force microscopy study of Alzheimer's β-amyloid peptide on different substrates: New insights into mechanism of β-sheet formation. Proc. Natl. Acad. Sci. 96: 3688-3693.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 3688-3693
-
-
Kowalewski, T.1
Holtzman, D.M.2
-
46
-
-
0024750637
-
A lattice statistical mechanics model of the conformational and sequence spaces of protein
-
Lau, K.F. and Dill, K.A. 1989. A lattice statistical mechanics model of the conformational and sequence spaces of protein. Macromolecules 22: 3986-3997.
-
(1989)
Macromolecules
, vol.22
, pp. 3986-3997
-
-
Lau, K.F.1
Dill, K.A.2
-
47
-
-
0031465967
-
"New view" of protein folding reconciled with the old through multiple unfolding simulations
-
Lazaridis, T. and Karplus, M. 1997. "New view" of protein folding reconciled with the old through multiple unfolding simulations. Science 278: 1928-1931.
-
(1997)
Science
, vol.278
, pp. 1928-1931
-
-
Lazaridis, T.1
Karplus, M.2
-
48
-
-
0032539573
-
Amyloid fibrils may be assembled from β-helical protofibrils
-
Lazo, N.D. and Cowning, D.T. 1998. Amyloid fibrils may be assembled from β-helical protofibrils. Biochemistry 37: 1731-1735.
-
(1998)
Biochemistry
, vol.37
, pp. 1731-1735
-
-
Lazo, N.D.1
Cowning, D.T.2
-
49
-
-
0000936038
-
The calculation of molecular vibration frequencies
-
Lindemann, F.A. 1910. The calculation of molecular vibration frequencies. Physik. Z. 11: 609-612.
-
(1910)
Physik. Z.
, vol.11
, pp. 609-612
-
-
Lindemann, F.A.1
-
50
-
-
0038679626
-
Melting, freezing and colloidal suspensions
-
Löwën, H. 1994. Melting, freezing and colloidal suspensions. Phys. Rep. 237: 249-324.
-
(1994)
Phys. Rep.
, vol.237
, pp. 249-324
-
-
Löwën, H.1
-
51
-
-
0033855775
-
Review: Model peptides and the physicochemical approach to β-amyloids
-
Lynn, D.G. and Meredith, S.C. 2000. Review: Model peptides and the physicochemical approach to β-amyloids. J. Struct. Biol. 130: 153-173.
-
(2000)
J. Struct. Biol.
, vol.130
, pp. 153-173
-
-
Lynn, D.G.1
Meredith, S.C.2
-
53
-
-
0013496963
-
Folding kinetics of proteins and copolymers
-
Miller, R., Danko, C.A., Fasolka, M.J., Balazs, A.C., Chan, H.S., and Dill, K.A. 1992. Folding kinetics of proteins and copolymers. J. Chem. Phys. 96: 768-780.
-
(1992)
J. Chem. Phys.
, vol.96
, pp. 768-780
-
-
Miller, R.1
Danko, C.A.2
Fasolka, M.J.3
Balazs, A.C.4
Chan, H.S.5
Dill, K.A.6
-
54
-
-
0031158574
-
Transgenic analysis of prion diseases
-
Moore, R.C., and Melton, D.W. 1997. Transgenic analysis of prion diseases. Mol. Hum. Reprod. 3: 529-544.
-
(1997)
Mol. Hum. Reprod.
, vol.3
, pp. 529-544
-
-
Moore, R.C.1
Melton, D.W.2
-
55
-
-
0032568599
-
Folding funnels and frustration in off-lattice minimalist protein landscapes
-
Nymeyer, H., García, A.E., and Onuchic, J.N. 1998. Folding funnels and frustration in off-lattice minimalist protein landscapes. Proc. Natl. Acad. Sci. 95: 5921-5928.
-
(1998)
Proc. Natl. Acad. Sci.
, vol.95
, pp. 5921-5928
-
-
Nymeyer, H.1
García, A.E.2
Onuchic, J.N.3
-
56
-
-
13144249171
-
Conformational stability and thermodynamics of folding of ribonucleases Sa, Sa2 and Sa3
-
Pace, C.N., Hebert, E.J., Shaw, K.L., Schell, D., Both, V., Krajcikova, D., Sevcik, J., Wilson, K.S., Dauter, Z., Hartley, R.W., et al. 1998. Conformational stability and thermodynamics of folding of ribonucleases Sa, Sa2 and Sa3. J. Mol. Biol. 279: 271-286.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 271-286
-
-
Pace, C.N.1
Hebert, E.J.2
Shaw, K.L.3
Schell, D.4
Both, V.5
Krajcikova, D.6
Sevcik, J.7
Wilson, K.S.8
Dauter, Z.9
Hartley, R.W.10
-
57
-
-
0034875603
-
A mathematical model of the kinetics of β-amyloid fibril growth from the denatured state
-
Pallitto, M.M. and Murphy, R.M. 2001. A mathematical model of the kinetics of β-amyloid fibril growth from the denatured state. Biophys. J. 81: 1805-1822.
-
(2001)
Biophys. J.
, vol.81
, pp. 1805-1822
-
-
Pallitto, M.M.1
Murphy, R.M.2
-
58
-
-
0032539684
-
Is the molten globule a third phase of proteins?
-
Pande, V.S. and Rokhsar, D.S. 1998. Is the molten globule a third phase of proteins? Proc. Natl. Acad. Sci. 95: 1490-1494.
-
(1998)
Proc. Natl. Acad. Sci.
, vol.95
, pp. 1490-1494
-
-
Pande, V.S.1
Rokhsar, D.S.2
-
59
-
-
0032502839
-
Contact order, transition state placement and the refolding rates of single domain proteins
-
Plaxco, K.W., Simons, K.T., and Baker, D. 1998. Contact order, transition state placement and the refolding rates of single domain proteins. J. Mol. Biol. 277: 985-994.
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 985-994
-
-
Plaxco, K.W.1
Simons, K.T.2
Baker, D.3
-
60
-
-
0029124248
-
Molten globule and protein folding
-
Ptitsyn, O.B. 1995. Molten globule and protein folding. Adv. Protein Chem. 47: 83-230.
-
(1995)
Adv. Protein Chem.
, vol.47
, pp. 83-230
-
-
Ptitsyn, O.B.1
-
61
-
-
0032725562
-
The tetrameric protein transthyretin dissociates to a non-native monomer in solution: A novel model for amyloidogenesis
-
Quintas, A., Saraiva, M.J.M., and Brito, R.M.M. 1999. The tetrameric protein transthyretin dissociates to a non-native monomer in solution: A novel model for amyloidogenesis. J. Biol. Chem. 274: 32943-32949.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 32943-32949
-
-
Quintas, A.1
Saraiva, M.J.M.2
Brito, R.M.M.3
-
62
-
-
36149044755
-
Molecular dynamics simulation of polymer chains with excluded volume
-
Rapaport, D.C. 1978. Molecular dynamics simulation of polymer chains with excluded volume. J. Phys. A Math. Gen. 11: L213-L216.
-
(1978)
J. Phys. A Math. Gen.
, vol.11
-
-
Rapaport, D.C.1
-
63
-
-
0028270634
-
Kinetics of protein folding: A lattice model study of the requirements for folding to the native state
-
Sali, A., Shakhnovich, E.I., and Karplus, M. 1994. Kinetics of protein folding: A lattice model study of the requirements for folding to the native state. J. Mol. Biol. 235: 1614-1636.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1614-1636
-
-
Sali, A.1
Shakhnovich, E.I.2
Karplus, M.3
-
64
-
-
0028123071
-
Alzheimer's disease: A central role for amyloid
-
Selkoe, D.J. 1991. Alzheimer's disease: A central role for amyloid. J. Neuropath. Exp. Neurol. 53: 438-447.
-
(1991)
J. Neuropath. Exp. Neurol.
, vol.53
, pp. 438-447
-
-
Selkoe, D.J.1
-
65
-
-
0034718157
-
Alzheimer's amyloid fibrils: Structure and assembly
-
Serpell, L.C. 2000. Alzheimer's amyloid fibrils: Structure and assembly. Biochim. Biophy. Acta 1502: 16-30.
-
(2000)
Biochim. Biophy. Acta
, vol.1502
, pp. 16-30
-
-
Serpell, L.C.1
-
66
-
-
0034321011
-
Energetic frustration and the nature of the transition state in protein folding
-
Shea, J.-E., Onuchic, J.N., and Brooks III, C.L. 2000. Energetic frustration and the nature of the transition state in protein folding. J. Chem. Phys. 113: 7663-7671.
-
(2000)
J. Chem. Phys.
, vol.113
, pp. 7663-7671
-
-
Shea, J.-E.1
Onuchic, J.N.2
Brooks III, C.L.3
-
67
-
-
0032878322
-
Formation of short-lived protein aggregates directly from coil in two-state folding
-
Silow, M., Tan, Y.J., Fersht, A.R., and Oliveberg, M. 1999. Formation of short-lived protein aggregates directly from coil in two-state folding. Biochemistry 38: 13006-13012.
-
(1999)
Biochemistry
, vol.38
, pp. 13006-13012
-
-
Silow, M.1
Tan, Y.J.2
Fersht, A.R.3
Oliveberg, M.4
-
68
-
-
0028265912
-
Secondary structure of amyloid β peptide correlates with neurotoxic activity in vitro
-
Simmons, L.K., May, P.C., Tomoselli, K.J., Rydel, R.E., Fuson, K.S., Brigham, B.F., Wright, S., Lieberburg, I., Becker, G.W., Brems, D.N., et al. 1994. Secondary structure of amyloid β peptide correlates with neurotoxic activity in vitro. Mol. Pharmacol. 45: 373-379.
-
(1994)
Mol. Pharmacol.
, vol.45
, pp. 373-379
-
-
Simmons, L.K.1
May, P.C.2
Tomoselli, K.J.3
Rydel, R.E.4
Fuson, K.S.5
Brigham, B.F.6
Wright, S.7
Lieberburg, I.8
Becker, G.W.9
Brems, D.N.10
-
69
-
-
0025784650
-
Dynamic Monte Carlo simulations of a new lattice model of globular protein folding, structure and dynamics
-
Skolnick, J. and Kolinski, A. 1991. Dynamic Monte Carlo simulations of a new lattice model of globular protein folding, structure and dynamics. J. Mol. Biol. 221: 499-531.
-
(1991)
J. Mol. Biol.
, vol.221
, pp. 499-531
-
-
Skolnick, J.1
Kolinski, A.2
-
70
-
-
0000449653
-
Molecular dynamic study of entangled hard-chain fluids
-
Smith, S.W., Hall, C.K., and Freeman, B.D. 1996. Molecular dynamic study of entangled hard-chain fluids. J. Chem. Phys. 104: 5616-5637.
-
(1996)
J. Chem. Phys.
, vol.104
, pp. 5616-5637
-
-
Smith, S.W.1
Hall, C.K.2
Freeman, B.D.3
-
71
-
-
0028168336
-
Amyloid-β aggregation: Selective inhibition of aggregation in mixtures of amyloid with different chain lengths
-
Snyder, S.W., Ladror, U.S., Wade, W.S., Wang, G.T., Barrett, L.W., Matayoshi, E.D., Huffaker, H.J., Krafft, G.A., and Holzman, T.F. 1994. Amyloid-β aggregation: Selective inhibition of aggregation in mixtures of amyloid with different chain lengths. Biophys. J. 67: 1216-1228.
-
(1994)
Biophys. J.
, vol.67
, pp. 1216-1228
-
-
Snyder, S.W.1
Ladror, U.S.2
Wade, W.S.3
Wang, G.T.4
Barrett, L.W.5
Matayoshi, E.D.6
Huffaker, H.J.7
Krafft, G.A.8
Holzman, T.F.9
-
72
-
-
11344259128
-
A topographic view of super-cooled liquids and glass formation
-
Stillinger, F.H. 1995. A topographic view of super-cooled liquids and glass formation. Science 267: 1935-1939.
-
(1995)
Science
, vol.267
, pp. 1935-1939
-
-
Stillinger, F.H.1
-
73
-
-
0031592945
-
Common core structure of amyloid fibrils by synchrotron X-ray diffraction
-
Sunde, M., Serpell, L.C., Bartlam, M., Fraser, P.E., Pepys, M.B., and Blake, C.C.F. 1997. Common core structure of amyloid fibrils by synchrotron X-ray diffraction. J. Mol. Biol. 273: 729-739.
-
(1997)
J. Mol. Biol.
, vol.273
, pp. 729-739
-
-
Sunde, M.1
Serpell, L.C.2
Bartlam, M.3
Fraser, P.E.4
Pepys, M.B.5
Blake, C.C.F.6
-
74
-
-
0016696599
-
Studies on protein folding, unfolding and fluctuations by computer simulation: The effect of specific amino acid sequence represented by specific inter-unit interactions
-
Taketomi, H., Ueda, Y., and Go, N. 1975. Studies on protein folding, unfolding and fluctuations by computer simulation: The effect of specific amino acid sequence represented by specific inter-unit interactions. Int. J. Pept. Protein Res. 7: 445-459.
-
(1975)
Int. J. Pept. Protein Res.
, vol.7
, pp. 445-459
-
-
Taketomi, H.1
Ueda, Y.2
Go, N.3
-
75
-
-
0017842051
-
Studies on protein folding, unfolding and fluctuations by computer simulation, II: A three-dimensional lattice model of lysozyme
-
Ueda, Y., Taketomi, H., and Go, N. 1978. Studies on protein folding, unfolding and fluctuations by computer simulation, II: A three-dimensional lattice model of lysozyme. Biopolymers 17: 1531-1548.
-
(1978)
Biopolymers
, vol.17
, pp. 1531-1548
-
-
Ueda, Y.1
Taketomi, H.2
Go, N.3
-
76
-
-
0033855845
-
The Alzheimer's peptide Aβ adopts a collapsed coil structure in water
-
Zhang, S., Iwata, K., Lachenmann, M.J., Peng, J.W., Li, S., Stimson, E.R., Lu, Y., Felix, A.M., Maggio, J.E., and Lee, J.P. 2000. The Alzheimer's peptide Aβ adopts a collapsed coil structure in water. J. Struct. Biol. 130: 130-141.
-
(2000)
J. Struct. Biol.
, vol.130
, pp. 130-141
-
-
Zhang, S.1
Iwata, K.2
Lachenmann, M.J.3
Peng, J.W.4
Li, S.5
Stimson, E.R.6
Lu, Y.7
Felix, A.M.8
Maggio, J.E.9
Lee, J.P.10
-
77
-
-
0031475159
-
Folding thermodynamics of a model three-helix bundle protein
-
Zhou, Y. and Karplus, M. 1997a. Folding thermodynamics of a model three-helix bundle protein. Proc. Natl. Acad. Sci. 94: 14429-14432.
-
(1997)
Proc. Natl. Acad. Sci.
, vol.94
, pp. 14429-14432
-
-
Zhou, Y.1
Karplus, M.2
-
78
-
-
0033598375
-
Interpreting the folding kinetics of helical proteins
-
-. 1997b. Interpreting the folding kinetics of helical proteins, Nature 401: 400-403.
-
(1997)
Nature
, vol.401
, pp. 400-403
-
-
-
79
-
-
0033527768
-
Folding of a model three-helix bundle protein: A thermodynamic and kinetic analysis
-
-. 1999. Folding of a model three-helix bundle protein: A thermodynamic and kinetic analysis. J. Mol. Biol. 293: 917-951.
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 917-951
-
-
-
80
-
-
0001351693
-
First-order disorder-to-order transition in an isolated homopolymer model
-
Zhou, Y., Hall, C.K., and Karplus, M. 1996. First-order disorder-to-order transition in an isolated homopolymer model. Phys. Rev. Lett. 77: 2822-2825.
-
(1996)
Phys. Rev. Lett.
, vol.77
, pp. 2822-2825
-
-
Zhou, Y.1
Hall, C.K.2
Karplus, M.3
-
81
-
-
0001015060
-
Equilibrium thermodynamics of homopolymers and clusters: Molecular dynamics and Monte Carlo simulations of systems with square-well interactions
-
Zhou, Y., Karplus, M., Wichert, J.M., and Hall, C.K. 1997. Equilibrium thermodynamics of homopolymers and clusters: Molecular dynamics and Monte Carlo simulations of systems with square-well interactions. J. Chem. Phys. 107: 10691-10708.
-
(1997)
J. Chem. Phys.
, vol.107
, pp. 10691-10708
-
-
Zhou, Y.1
Karplus, M.2
Wichert, J.M.3
Hall, C.K.4
-
82
-
-
0033613906
-
Native proteins are surface-molten solids: Application of the Lindemann criterion for the solid versus liquid state
-
Zhou, Y., Vitkup, D., and Karplus, M. 1999. Native proteins are surface-molten solids: Application of the Lindemann criterion for the solid versus liquid state. J. Mol. Biol. 285: 1371-1375.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 1371-1375
-
-
Zhou, Y.1
Vitkup, D.2
Karplus, M.3
|