An archaeal endoribonuclease catalyzes cis- and transnonspliceosomal splicing in mouse cells

Nature Biotechnology

Volumn 21, Issue 12, 2003, Pages 1499-1504

  Deidda, Giancarlo ^a   Rossi, Nicoletta ^a   Tocchini Valentini, Glauco P ^a  

^a CNR   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

CATALYSIS; CELLS; ENZYMES; RNA; SUBSTRATES;

SPLICING;

BIOTECHNOLOGY;

LIGASE; RIBONUCLEASE; TRANSFER RNA;

ANIMAL CELL; ARCHAEBACTERIUM; ARTICLE; CHIMERA; CONTROLLED STUDY; DNA FLANKING REGION; ENZYME MECHANISM; GENE STRUCTURE; GENE TARGETING; GENETIC TRANSFECTION; INTRON; METHANOCOCCUS JANNASCHII; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; REPORTER GENE; RNA CLEAVAGE; RNA SPLICING;

3T3 CELLS; ANIMALS; ENDORIBONUCLEASES; GENE TARGETING; GENE THERAPY; GENE TRANSFER TECHNIQUES; HUMANS; METHANOCOCCUS; MICE; MUTATION; RECOMBINATION, GENETIC; RNA, MESSENGER; TRANS-SPLICING;

ANIMALIA; ARCHAEA; METHANOCALDOCOCCUS JANNASCHII; METHANOCOCCUS;

EID: 0347292811     PISSN: 10870156     EISSN: None     Source Type: Journal    
DOI: 10.1038/nbt908     Document Type: Article

References (27)

1. Abelson, J., Trotta, C.R. & Li, H. tRNA splicing. J. Biol. Chem. 273, 12685-12688 (1998).
2. Moore, M.J. et al. The RNA World (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, USA, 1993).
3. Maniatis, T. & Tasic, B. Alternative pre-mRNA splicing and proteome expansion in metazoans. Nature 418, 236-243 (2002).
4. Dahlberg, J.E., Lund, E. & Goodwin, E.B. Nuclear translation: what is the evidence? RNA 9, 1-8 (2003).
5. Gonzalez, T.N., Sidrauski, C., Dorfler, S. & Walter, P. Mechanism of non-spliceosomal mRNA splicing in the unfolded protein response pathway. EMBO J. 18, 3119-3132 (1999).
6. Sidrauski, C., Cox, J.S. & Walter, P. tRNA ligase is required for regulated mRNA splicing in the unfolded protein response. Cell 87, 405-413 (1996).
7. Thompson, L.D. & Daniels, C.J. Recognition of exon-intron boundaries by the Halobacterium volcanii tRNA intron endonuclease. J. Biol. Chem. 265, 18104-18111 (1990).
8. Lykke-Andersen, J. & Garrett, R.A. Structural characteristics of the stable RNA introns of archaeal hyperthermophiles and their splicing junctions. J. Mol. Biol. 243, 846-855 (1994).
9. Diener, J.L. & Moore, P.B. Solution structure of a substrate for the archaeal pre-tRNA splicing endonucleases: the bulge-helix-bulge motif. Mol. Cell. 1, 883-894 (1998).
10. Li, H., Trotta, C.R. & Abelson, J. Crystal structure and evolution of a transfer RNA splicing enzyme. Science 280, 279-284 (1998).
11. Kozak, M. An analysis of 5′-noncoding sequences from 699 vertebrate messenger RNAs. Nucleic Acids Res. 15, 8125-8148 (1987).
12. Kozak, M. Downstream secondary structure facilitates recognition of initiator codons by eukaryotic ribosomes. Proc. Natl. Acad. Sci. USA 87, 8301-8305 (1990).
13. Filipowicz, W., Konarska, M., Gross, H.J. & Shatkin, A.J. RNA 3′-terminal phosphate cyclase activity and RNA ligation in HeLa cell extract. Nucleic Acids Res. 11, 1405-1418 (1983).
14. Perkins, K.K., Furneaux, H. & Hurwitz, J. Isolation and characterization of an RNA ligase from HeLa cells. Proc. Natl. Acad. Sci. USA 82, 684-688 (1985).
15. Phizicky, E.M., Schwartz, R.C. & Abelson, J. Saccharomyces cerevisiae tRNA ligase. Purification of the protein and isolation of the structural gene. J. Biol. Chem. 261, 2978-2986 (1986).
16. Cox, J.S. & Walter, P. A novel mechanism for regulating activity of a transcription factor that controls the unfolded protein response. Cell 87, 391-404 (1996).
17. MacGregor, G.R. & Caskey, C.T. Construction of plasmids that express E. coli β-galactosidase in mammalian cells. Nucleic Acids Res. 17, 2365 (1989).
18. Puttaraju, M., Jamison, S.F., Mansfield, S.G., Garcia-Blanco, M.A. & Mitchell, L.G. Spliceosome-mediated RNA trans-splicing as a tool for gene therapy. Nat. Biotechnol. 17, 246-252 (1999).
19. Thomas, K.R. & Capecchi, M.R. Site-directed mutagenesis by gene targeting in mouse embryo-derived stem cells. Cell 51, 503-512 (1987).
20. Medico, E., Gambarotta G., Gentile, A., Comoglio, P.M. & Soriano, P. A gene trap vector system for identifying transcriptionally responsive genes. Nat. Biotechnol. 19, 579-582 (2001).
21. Baron, U. & Bujard, H. Tet repressor-based system for regulated gene expression in eukaryotic cells: principles and advances. Methods Enzymol. 327, 401-421 (2000).
22. Spencer, D.M. et al. Functional analysis of Fas signaling in vivo using synthetic inducers of dimerization. Curr. Biol. 6, 839-847 (1996).
23. Gu, H., Zou, Y.R. & Rajewsky, K. Independent control of immunoglobulin switch recombination at individual switch regions evidenced through Cre-loxP-mediated gene targeting. Cell 73, 1155-1164 (1993).
24. Gu, H., Marth, J.D., Orban, P.C., Mossmann, H. & Rajewsky, K. Deletion of a DNA polymerase β gene segment in T cells using cell type-specific gene targeting. Science 265, 103-106 (1994).
25. Lagos-Quintana, M. et al. Identification of tissue-specific microRNAs from mouse. Curr. Biol. 12, 735-739 (2002).
26. Wutz, A., Rasmussen, T.P. & Jaenisch, R. Chromosomal silencing and localization are mediated by different domains of Xist RNA. Nat. Genet. 30, 167-174 (2002).
27. Sleutels, F., Zwart, R. & Barlow, D.P. The non-coding Air RNA is required for silencing autosomal imprinted genes. Nature 415, 810-813 (2002).