A two-stage information-theoretic approach to modeling landscape-level attributes and maximum recruitment of chinook salmon in the columbia river basin

Natural Resource Modeling

Volumn 15, Issue 2, 2002, Pages 227-257

  Thompson, William L ^a,b   Lee, Danny C ^a,c  

^a ROCKY MOUNTAIN RESEARCH STATION   (United States)

^b UNIVERSITY OF ARKANSAS   (United States)

^c PACIFIC SOUTHWEST RESEARCH STATION   (United States)

Author keywords

Akaike's information criterion; Chinook salmon; Model averaging; Oncorhynchus tshawytscha; Ricker model; Stock recruitment

Indexed keywords

EID: 0347283800     PISSN: 08908575     EISSN: 19397445     Source Type: Journal    
DOI: 10.1111/j.1939-7445.2002.tb00087.x     Document Type: Article

References (52)

1. H. Akaike [1973], Information Theory and an Extension of the Maximum Likelihood Principle, in Second Internat. Sympos. on Information Theory (B.N. Petrov and F. Csaki, eds.), Akademiai Kiado, Budapest, Hungary.
2. C.W. Andrus, B.A. Long and H.A. Froehlich [1988], Woody Debris and Its Contribution to Pool Formation in a Coastal Stream 50 Years after Logging, Canad. J. Fisheries Aquat. Sci. 54, 2080–2086.
3. R.C.P. Beamesderfer, H.A. Schaller, M.P. Zimmerman, C.E. Petrosky, O.P. Lang-ness and L. LaVoy [1998], Spawner-Recruit Data for Spring and Summer Chinook Salmon Populations in Idaho, Oregon, and Washington, in Plan for Analyzing and Testing Hypotheses (PAT H): Retrospective and Prospective Analyses of Spring/Summer Chinook (D.R. Marmorek and C.N. Peters, eds.), ESSA Technologies, Ltd., Vancouver. Available at: http:www.efw.bpa.govPATHreports1997retrotoc.htm.
4. R.E. Bilby, B.R. Fransen, P.A. Bisson and J.K. Walter [1998], Response of Juvenile Coho Salmon (Oncorhynchus kisutch) and Steelhead (Oncorhynchus mykiss) to the Addition of Salmon Carcasses to Two Streams in Southwestern Washington, Canad. J. Fisheries Aquat. Sci. 55, 1909–1918.
5. P.A. Bisson, T.P. Quinn, G.H. Reeves and S.V. Gregory [1992], Best Management Practices, Cumulative Effects, and Long-Term Trends in Fish Abundance in Pacific Northwest River Systems, in Watershed Management: Balancing Sustainability (R.J. Naiman, ed.), Springer-Verlag, New York.
6. G.E.P. Box and G.M. Jenkins [1970], Time Series Forecasting: Forecasting and Control, Holden-Day, London.
7. S.T. Buckland, K.P. Burnham and N.H. Augustine [1997], Model Selection: An Integral Part of Inference, Biometrics 53, 603–618.
8. K.P. Burnham and D.R. Anderson [1998], Model Selection and Inference: A Practical Information-Theoretic Approach, Springer-Verlag, New York.
9. C.J. Cederholm, M.D. Kunze, T. Murota and A. Sibatani [1999], Pacific Salmon Carcasses: Essential Contributions of Nutrients and Energy for Aquatic and Terrestrial Ecosystems, Fisheries 24 (10), 6–15.
10. C.J. Cederholm, R.E. Bilby, P.A. Bisson, T.W. Bumstead, B.R. Fransen, W.J. Scarlett and J.W. Ward [1997], Response of Juvenile Coho Salmon and Steelhead to Placement of Large Woody Debris in a Coastal Washington Stream, No. Amer. J. Fisheries Manage. 17, 947–963.
11. D.W. Chapman [1988], Critical Review of Variables Used to Define Effects of Fines in Redds of Large Salmonids, Trans. Amer. Fisheries Soc. 117, 1–21.
12. P.J. Connolly and J.D. Hall [1999], Biomass of Coastal Cutthroat Trout in Unlogged and Previously Clear-Cut Basins in the Coastal Range of Oregon, Trans. Amer. Fisheries Soc. 128, 890–899.
13. T.M. Cover and J.A. Thomas [1991], Elements of Information Theory, John Wiley, New York.
14. C. Daly, R.P. Neilson and D.L. Phillips [1994], A Statistical-Topographic Model for Mapping Climatological Precipitation over Mountainous Terrain, J. Appl. Meteorol. 33, 140–158.
15. R. Deriso, D.R. Marmorek and I. Parnell [1996], Retrospective Analysis of Passage Mortality of Spring Chinook of the Columbia River, in Plan for Analyzing and Testing Hypotheses (PATH): Final Report on Retrospective Analyses for Fiscal Year 1996 (D.R. Marmorek and C.N. Peters, eds.), ESSA Technologies, Ltd., Vancouver. Available at: http:www.efw.bpa.govPATHreports ISRP1999CD/PATH%20Reports/ FY96 Retro Report/Chapter 5/.
16. A.W.F. Edwards [1992], Likelihood, Johns Hopkins Univ. Press, Baltimore.
17. J.M. Emlen [1995], Population Viability of the Snake River Chinook Salmon (Oncorhynchus tshawytscha), Canad. J. Fisheries Aquat. Sci. 52, 1442–1448.
18. C.A. Frissell [1993], Topology of Extinction and Endangerment of Native Fishes in the Pacific Northwest and California (USA), Conserv. Biol. 7, 342–354.
19. F.R. Hauer, G.C. Poole, J.T. Gangemi and C.V. Baxter [1999], Large Woody Debris in Bull Trout (Salvelinus confluentus) Spawning Streams of Logged and Wilderness Watersheds in Northwest Montana, Canad. J. Fisheries Aquat. Sci. 56, 915–924.
20. J. Heggenes and R. Borgstrom [1991], Effect of Habitat Types on Survival, Spatial Distribution and Production of an Allopatric Cohort of Atlantic Salmon, Salmo salar L., under Conditions of Low Competition, J. Fish. Bio. 38, 267–280.
21. D.W. Hosmer and S. Lemeshow [1989], Applied Logistic Regression, J. Wiley, New York.
22. R.L. Hunt [1969], Effects of Habitat Alteration on the Production, Standing Crops, and Yield of Brook Trout in Lawrence Creek, Wisconsin, in H.R. MacMillan Lectures in Fisheries (T.G. Northcote, ed.), Vancouver University, Vancouver.
23. C. Huntington, W. Nehlsen and J. Bowers [1996], A Survey of Healthy Native Stocks of Anadromous Salmonids in the Pacific Northwest and California, Fisheries 21 (3), 6–14.
24. C.M. Hurvich and C. Tsai [1989], Regression and Time Series Model Selection in Small Samples, Biometrika 76, 297–307.
25. J.V. Krutilla [1967], The Columbia River Treaty: The Economics of an International River Basin Development, Johns Hopkins Univ. Press, Baltimore.
26. S. Kullback [1997], Information Theory and Statistics (reprinted), Dover Publications, New York.
27. S. Kullback and R.A. Leibler [1951], On Information and Sufficiency, Ann. Math. Stat. 22, 79–86.
28. J.-D. Lebreton, K.P. Burnham, J. Clobert and D.R. Anderson [1992], Modeling Survival and Testing Biological Hypotheses using Marked Animals: A Unified Approach with Case Studies, Ecol. Mono. 62, 67–118.
29. D.C. Lee, J.R. Sedell, B.E. Rieman, R.F. Thurow, J.E. Williams, D. Burns, J. Clayton, L. Decker, R. Gresswell, R. House, P. Howell, K.M. Lee, K. Macdonald, J. McIntyre, S. McKinney, T. Noel, J.E. O'Connor, C.K. Overton, D. Perkinson, K. Tu and P. Van Eimeren [1997], Broadscale Assessment of Aquatic Species and Habitats, in An Assessment of Ecosystem Components in the Interior Columbia Basin and Portions of the Klamath and Great Basins, Volume III (T.M. Quigley and S.J. Arbelbide, tech. eds.), USDA Forest Service, Gen. Tech. Rep. PNW-GTR-405, Portland, Oregon.
30. T.E. Lisle [1986], Effects of Woody Debris on Anadromous Salmonid Habitat, Prince of Wales Island, Southeast Alaska, No. Amer. J. Fisheries Manage. 6, 538–550.
31. D.S. Lloyd, J.P. Koenings and J.D. LaPerriere [1987], Effects of Turbidity in Fresh Waters of Alaska, No. Amer. J. Fisheries Manage. 7, 18–33.
32. R.S. Lunetta, B.L. Cosentino, D.R. Montgomery, E.M. Beamer and T.J. Beechie [1997], GIS-Based Evaluation of Salmon Habitat in the Pacific Northwest, Pho-togramm. Eng. Remote Sensing 63, 1219–1229.
33. M.L. Murphy and K.V. Koski [1989], Input and Depletion of Woody Debris in Alaska Streams and Implications for Streamside Management, No. Amer. J. Fisheries Manage. 9, 427–436.
34. M.L. Murphy, J. Heifetz, S.W. Johnson, K.V. Koski and J.F. Thedinga [1986], Effects of Clear-Cut Logging With and Without Buffer Strips on Juvenile Salmonids in Alaskan Streams, Canad. J. Fisheries Aquat. Sci. 43, 1521–1533.
35. T.J. Myers and S. Swanson [1995], Impact of Deferred Rotation Grazing on Stream Characteristics in Central Nevada: A Case Study, No. Amer. J. Fisheries Manage. 15, 428–439.
36. W. Nehlsen, J.E. Williams and J.A. Lichatowich [1991], Pacific Salmon at the Crossroads: Stocks at Risk from California, Oregon, Washington, and Idaho, Fisheries 16 (2), 4–21.
37. J. Neter, W. Wasserman and M.H. Kutner [1985], Applied Linear Statistical Models, 2nd Ed., Irwin, Homewood, Illinois.
38. Northwest Power Planning Council [1986], Compilation of Information on Salmon and Steelhead Losses in the Columbia River Basin, Northwest Power Planning Council, Portland, Oregon.
39. W.S. Platts, R.J. Torquemada, M.L. McHenry and C.K. Graham [1989], Changes in Salmon Spawning and Rearing Habitat from Increased Delivery of Fine Sediment to the South Fork Salmon River, Idaho, Trans. Amer. Fisheries Soc. 118, 274–283.
40. S.C. Ralph, G.C. Poole, L.L. Conquest and R.J. Naiman [1994], Stream Channel Morphology and Woody Debris in Logged and Unlogged Basins of Western Washington, Canad. J. Fisheries Aquat. Sci. 51, 37–51.
41. S. Ratner, R. Lande and B.B. Roper [1997], Population Viability Analysis of Spring Chinook Salmon in the South Umpqua River, Oregon, Conserv. Bio. 11, 879–889.
42. W.E. Ricker [1975], Computation and Interpretation of Biological Statistics of Fish Populations, Bull. Fish. Board Canada No. 191, Ottawa.
43. R.M. Royall [1997], Statistical Evidence: A Likelihood Paradigm, Chapman and Hall, New York.
44. SAS Institute Incorporated [1990], SAS Procedures Guide, SAS Institute, Inc., Cary, North Carolina.
45. SAS Institute Incorporated [1996], SAS/STAT Software: Changes and Enhancements, through Version 6.11, SAS Institute, Inc., Cary, North Carolina.
46. D.L. Scarnecchia and E.P. Bergersen [1987], Trout Production and Standing Crop in Colorado's Small Streams, as Related to Environmental Features, No. Amer. J. Fisheries Manage. 7, 315–330.
47. H.A. Schaller, C.E. Petrosky and O.P. Langness [1999], Contrasting Patterns of Productivity and Survival Rates for Stream-Type Chinook Salmon (Oncorhynchus tshawytscha) Populations of the Snake and Columbia Rivers, Canad. J. Fisheries Aquat. Sci. 56, 1031–1045.
48. I.J. Schlosser [1991], Stream Fish Ecology: A Landscape Perspective, Biosci. 41, 704–712.
49. P. Starr and R. Hilborn [1988], Reconstruction of Harvest Rates and Stock Contribution in Gauntlet Salmon Fisheries: Application to British Columbia and Washington Sockeye (Oncorhynchus nerka), Canad. J. Fisheries Aquat. Sci. 45, 2216–2229.
50. C.J. Walters [1986], Adaptive Management of Renewable Resources, McMillan, New York.
51. J.E. Williams, J.E. Johnson, D.A. Hendrickson, S. Contreras-Balderas, J.D. Williams, M. Navarro-Mendoza, D.E. McAllister and J.E. Deacon [1989], Fishes of North America Endangered, Threatened, or of Special Concern, Fisheries 14, 2–20.
52. M.S. Wipfli, J. Hudson and J. Caouette [1998], Influence of Salmon Carcasses on Stream Productivity: Response of Biofilm and Benthic Macroinvertebrates in Southeastern Alaska, U.S.A, Canad. J. Fisheries Aquat. Sci. 55, 1503–1511.