Introducing the stochastic simulation of chemical reactions: Using the Gillespie algorithm and MATLAB

Chemical Engineering Education

Volumn 37, Issue 1 SPEC. ISS., 2003, Pages 14-19

  Martínez Urreaga, Joaquín ^a   Mira, José ^a   González Fernández, Camino ^a  

^a UNIVERSIDAD POLITÉCNICA DE MADRID   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

CONDITIONAL PROBABILITY; GILLESPIE ALGORITHMS; STOCHASTIC SIMULATION; STOCHASTIC TRAJECTORIES;

ALGORITHMS; COMPUTER SIMULATION; COMPUTER SOFTWARE; COPOLYMERIZATION; MATHEMATICAL MODELS; MONOMERS; MONTE CARLO METHODS; PROBABILITY; RANDOM PROCESSES; RUNGE KUTTA METHODS;

CHEMICAL REACTIONS;

EID: 0347214808     PISSN: 00092479     EISSN: None     Source Type: Trade Journal    
DOI: None     Document Type: Article

References (10)

1. Schieber, J.D., "Applied Stochastic for Engineering," Chem. Eng. Ed., 27(4), 170 (1993)
2. Scappin, M., and P. Canu, "Analysis of Reaction Mechanisms through Stochastic Simulation," Chem. Eng. Sci., 56, 5157 (2001)
3. De Levie, R., "Stochastics: The Basis of Chemical Dynamics," J. Chem. Ed., 77(6), 771 (2000)
4. McAdams, H.H., and A. Arkin, "It's a Noisy Business! Genetic Regulation at the Nanomolar Scale," Trends in Genetics, 15(2), 65 (1999)
5. Gillespie. D., Markov Processes: An Introduction for Physical Scientists, Academic Press, Inc., New York, NY (1984)
6. Fahidy, T.Z., "Solving Chemical Kinetics Problems by the Markov Chain Approach," Chem. Eng. Ed., 27(1), 42 (1993)
7. Steinfeld, J.I., J.S. Francisco, and W.L. Hase, Chemical Kinetics and Dynamics, Prentice Hall, Englewood Cliffs, NJ (1989)
8. CKS home page: 〈http://www.almaden.ibm.com/st/msim/〉 (Available Sept. 2002)
9. Download StochSim: 〈ftp://ftp.cds.caltech.edu/pub/dbray〉 (Available Sept. 2002)
10. StochSim homepage: 〈http://www.zoo.cam.ac.uk/comp-cell/StochSim. html〉 (Available Sept. 2002)