Full-malaria 2004: An enlarged database for comparative studies of full-length cDNAs of malaria parasites, Plasmodium species

Nucleic Acids Research

Volumn 32, Issue DATABASE ISS., 2004, Pages

  Watanabe, Junichi ^a   Suzuki, Yutaka ^a   Sasaki, Masahide ^a   Sugano, Sumio ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; COMPLEMENTARY DNA;

ARTICLE; COMPARATIVE STUDY; DNA SEQUENCE; EXPRESSED SEQUENCE TAG; FULL MALARIA; GENBANK; GENE FUNCTION; GENE IDENTIFICATION; GENE LIBRARY; GENE MAPPING; GENE NUMBER; GENE STRUCTURE; GENETIC ANALYSIS; GENETIC DATABASE; MALARIA; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMODIUM; PLASMODIUM FALCIPARUM; PLASMODIUM YOELII; PREDICTION; PRIORITY JOURNAL; PROMOTER REGION; SEQUENCE ALIGNMENT; TRANSCRIPTION INITIATION SITE;

ANIMALS; BASE SEQUENCE; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; DNA, COMPLEMENTARY; EXPRESSED SEQUENCE TAGS; GENES, PROTOZOAN; GENOMICS; HUMANS; INTERNET; MALARIA; MICE; MOLECULAR SEQUENCE DATA; PLASMODIUM; PLASMODIUM FALCIPARUM;

MURINAE; PLASMODIUM FALCIPARUM; PLASMODIUM YOELII; PLASMODIUM YOELII YOELII; PROTOZOA;

EID: 0347125226     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (13)

1. Gardner,M.J., Hall,N., Fung,E., White,O., Berriman,M., Hyman,R.W., Carlton,J.M., Pain,A., Nelson,K.E., Bowman,S. et al. (2002) Genome sequence of the human malaria parasite Plasmodium falciparum. Nature, 419, 498-511.
2. Florens,L., Washburn,M.P., Raine,J.D., Anthony,R.M., Grainger,M., Haynes,J.D., Moch,J.K., Muster,N., Sacci,J.B., Tabb,D.L. et al. (2002) A proteomic view of the Plasmodium falciparum life cycle. Nature, 419, 520-526.
3. Hall,N., Pain,A., Berriman,M., Churcher,C., Harris,B., Harris,D., Mungall,K., Bowman,S., Atkin,R., Baker,S. et al. (2002) Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Nature, 419, 527-531.
4. Gardner,M.J., Shallom,S.J., Carlton,J.M., Salzberg,S.L., Nene,V., Shoaibi,A., Ciecko,A., Lynn,J., Rizzo,M., Weaver,B. et al. (2002) Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14. Nature, 419, 531-534.
5. Hyman,R.W., Fung,E., Conway,A., Kurdi,O., Mao,J., Miranda,M., Nakao,B., Rowley,D., Tamaki,T., Wang,F. et al. (2002) Sequence of of Plasmodium falciparum chromosome 12. Nature, 419, 534-537.
6. Lasonder,E., Ishihama,Y., Andersen,J.S., Vermunt,A.M., Pain,A., Sauerwein,R.W., Eling,W.M., Hall,N., Waters,A.P., Stunnenberg,H.G. et al. (2002) Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry. Nature, 419, 537-542.
7. Le Roch,K.G., Zhou,Y., Blair,P.L., Grainger,M., Moch,J.-K., Haynes,J.D., De la Vega,P., Holder,A.A., Batalov,S., Carucci,D.J. et al. (2003) Discovery of gene function by expression profiling of the malaria parasite life cycle. Science, 301, 1503-1508.
8. Watanabe,J., Sasaki,M., Suzuki,Y. and Sugano,S. (2001) FULL-malaria: a database for a full-length enriched cDNA library from human malaria parasites, Plasmodium falciparum. Nucleic Acids Res., 29, 70-71.
9. Suzuki,Y. and Sugano,S. (2003) Construction of a full-length enriched and a 5′-end enriched cDNA library using the oligo-capping method. Methods Mol. Biol., 221, 73-91.
10. Florea,L., Hartzell,G., Zhang,Z., Rubin,G.M. and Miller,W. (1998) A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res., 8, 967-974.
11. Kent,W.J. (2002) BLAT - the BLAST-like alignment tool. Genome Res., 12, 656-664.
12. Carlton,J.M., Angiuoli,S.V., Suh,B.B., Kooij,T.W., Pertea,M., Silva,J.C., Ermolaeva,M.D., Allen,J.E., Selengut,J.D., Koo,H.L. et al. (2002) Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature, 419, 512-519.
13. Huang,X., Miller,W., Schwartz,S. and Hardison,R.C. (1992) Parallelization of a local similarity algorithm. Comput. Appl. Biosci., 8, 155-165