-
1
-
-
0031371067
-
Multiple sources of character information and the phylogeny of Hawaiian drosophilids
-
Baker, R.H., DeSalle, R., 1997. Multiple sources of character information and the phylogeny of Hawaiian drosophilids. Syst. Biol. 46, 654-673.
-
(1997)
Syst. Biol.
, vol.46
, pp. 654-673
-
-
Baker, R.H.1
DeSalle, R.2
-
2
-
-
0002844544
-
Combining trees as a way of combining datasets for phylogenetic inference, and the desirability of combining gene trees
-
Baum, B.R., 1992. Combining trees as a way of combining datasets for phylogenetic inference, and the desirability of combining gene trees. Taxon 41, 3-10.
-
(1992)
Taxon
, vol.41
, pp. 3-10
-
-
Baum, B.R.1
-
3
-
-
0031963154
-
Distribution of chromosomal length variation in natural isolates of Escherichia coli
-
Bergthorsson, U., Ochman, H., 1998. Distribution of chromosomal length variation in natural isolates of Escherichia coli. Mol. Biol. Evol. 15, 6-16.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 6-16
-
-
Bergthorsson, U.1
Ochman, H.2
-
4
-
-
0037414340
-
Polymorphism of gene encoding SOS polymerases in natural populations of Escherichia coli
-
Bjedov, I., Lecointre, G., Tenaillon, O., Vaury, C., Radman, M., Taddei, F., Denamur, E., Matic, I., 2003. Polymorphism of gene encoding SOS polymerases in natural populations of Escherichia coli. DNA Repair 2, 417-426.
-
(2003)
DNA Repair
, vol.2
, pp. 417-426
-
-
Bjedov, I.1
Lecointre, G.2
Tenaillon, O.3
Vaury, C.4
Radman, M.5
Taddei, F.6
Denamur, E.7
Matic, I.8
-
5
-
-
0031885976
-
Chromosomal regions specific to pathogenic isolates of Escherichia coli have a phylogenetically clustered distribution
-
Boyd, E.F., Hartl, D.L., 1998. Chromosomal regions specific to pathogenic isolates of Escherichia coli have a phylogenetically clustered distribution. J. Bacteriol. 180, 1159-1165.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 1159-1165
-
-
Boyd, E.F.1
Hartl, D.L.2
-
6
-
-
0036375811
-
Detection of recombination among Salmonella enterica strains using the incongruence length difference test
-
Brown, E.W., Kotewicz, M.L., Cebula, T.A., 2002. Detection of recombination among Salmonella enterica strains using the incongruence length difference test. Mol. Phylogenet. Evol. 24, 102-120.
-
(2002)
Mol. Phylogenet. Evol.
, vol.24
, pp. 102-120
-
-
Brown, E.W.1
Kotewicz, M.L.2
Cebula, T.A.3
-
7
-
-
0033775633
-
Rapid and simple determination of the Escherichia coli phylogenetic groups
-
Clermont, O., Bonacorsi, S., Bingen, E., 2000. Rapid and simple determination of the Escherichia coli phylogenetic groups. Appl. Environ. Microbiol. 66, 4555-4558.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 4555-4558
-
-
Clermont, O.1
Bonacorsi, S.2
Bingen, E.3
-
8
-
-
0035208697
-
Automated ribotyping provides rapid phylogenetic subgroup affiliation on clinical extraintestinal pathogenic Escherichia coli strains
-
Clermont, O., Cordevant, C., Bonacorsi, S., Marecat, A., Lange, M., Bingen, E., 2001. Automated ribotyping provides rapid phylogenetic subgroup affiliation on clinical extraintestinal pathogenic Escherichia coli strains. J. Clin. Microbiol. 39, 4549-4553.
-
(2001)
J. Clin. Microbiol.
, vol.39
, pp. 4549-4553
-
-
Clermont, O.1
Cordevant, C.2
Bonacorsi, S.3
Marecat, A.4
Lange, M.5
Bingen, E.6
-
9
-
-
0036221248
-
When does the incongruent length difference test fail?
-
Darlu, P., Lecointre, G., 2002. When does the incongruent length difference test fail? Mol. Biol. Evol. 19, 432-437.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 432-437
-
-
Darlu, P.1
Lecointre, G.2
-
10
-
-
0034512402
-
Noise and incongruence: Interpreting results of the incongruence length difference test
-
Dolphin, K., Belshaw, R., Orme, C.D.L., Quicke, D.L.J., 2000. Noise and incongruence: interpreting results of the incongruence length difference test. Mol. Phylogenet. Evol. 17, 401-406.
-
(2000)
Mol. Phylogenet. Evol.
, vol.17
, pp. 401-406
-
-
Dolphin, K.1
Belshaw, R.2
Orme, C.D.L.3
Quicke, D.L.J.4
-
11
-
-
0034703744
-
Evolutionary implications of the frequent horizontal transfer of mistmatch repair genes
-
Denamur, E., Lecointre, G., Darlu, P., Tenaillon. O., Acquaviva, C., Sayada, C., Sunjevaric, I., Rothstein, R., Elion, J., Taddei, F., Radman, M., Matic, I., 2000. Evolutionary implications of the frequent horizontal transfer of mistmatch repair genes. Cell 103, 711-721.
-
(2000)
Cell
, vol.103
, pp. 711-721
-
-
Denamur, E.1
Lecointre, G.2
Darlu, P.3
Tenaillon, O.4
Acquaviva, C.5
Sayada, C.6
Sunjevaric, I.7
Rothstein, R.8
Elion, J.9
Taddei, F.10
Radman, M.11
Matic, I.12
-
12
-
-
0025788069
-
Recombination in Escherichia coli and the definition of biological species
-
Dykhuizen, D.E., Green, L., 1991. Recombination in Escherichia coli and the definition of biological species. J. Bacteriol. 173, 7257-7268.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 7257-7268
-
-
Dykhuizen, D.E.1
Green, L.2
-
13
-
-
85030924385
-
The evolutionary history of Shigella and enteroinvasive Escherichia coli revised
-
in press
-
Escobar-Páramo, P., Giudicelli, C., Parsot, C., Denamur, E., in press. The evolutionary history of Shigella and enteroinvasive Escherichia coli revised. J. Mol. Evol.
-
J. Mol. Evol.
-
-
Escobar-Páramo, P.1
Giudicelli, C.2
Parsot, C.3
Denamur, E.4
-
14
-
-
84989432221
-
Testing significance of incongruence
-
Farris, J.S., Kallersjo, M., Kluge, A.G., Bult, C., 1995. Testing significance of incongruence. Cladistics 10, 315-319.
-
(1995)
Cladistics
, vol.10
, pp. 315-319
-
-
Farris, J.S.1
Kallersjo, M.2
Kluge, A.G.3
Bult, C.4
-
15
-
-
84959798530
-
Cases in which parsimony or compatibility methods will be positively misleading
-
Felsenstein, J., 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27, 401-410.
-
(1978)
Syst. Zool.
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
16
-
-
0028030110
-
Detecting selective sweeps in naturally occurring Escherichia coli
-
Guttman, D.S., Dykhuizen, D.E., 1994. Detecting selective sweeps in naturally occurring Escherichia coli. Genetics 138, 993-1003.
-
(1994)
Genetics
, vol.138
, pp. 993-1003
-
-
Guttman, D.S.1
Dykhuizen, D.E.2
-
17
-
-
0346743491
-
Dating the human-ape spliting by a molecular clock of mitochondrial DNA
-
Hasegawa, M., Kishino, H., Yano, T., 1985. Dating the human-ape spliting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 29, 170-179.
-
(1985)
J. Mol. Evol.
, vol.29
, pp. 170-179
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
18
-
-
0025096192
-
Phylogenetic distribution of branched RNA-linked multicopy single-stranded DNA among natural isolates of Escherichia coli
-
Herzer, P.J., Inouye, S., Inouye, M., Whittman, T.S., 1990. Phylogenetic distribution of branched RNA-linked multicopy single-stranded DNA among natural isolates of Escherichia coli. J. Bacteriol. 172, 6175-6181.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 6175-6181
-
-
Herzer, P.J.1
Inouye, S.2
Inouye, M.3
Whittman, T.S.4
-
19
-
-
0026605537
-
CLUSTALV: Improved software for multiple sequence alignment
-
Higgins, D.G., Bleasby, A.J., Fuchs, R., 1992. CLUSTALV: improved software for multiple sequence alignment. CABIOS 8, 189-191.
-
(1992)
CABIOS
, vol.8
, pp. 189-191
-
-
Higgins, D.G.1
Bleasby, A.J.2
Fuchs, R.3
-
20
-
-
0025777130
-
Molecular and evolutionary relationships among enteric bacteria
-
Lawrence, J.G., Ochman, H., Hartl, D.L., 1991. Molecular and evolutionary relationships among enteric bacteria. J. Gen. Microbiol. 137, 1911-1921.
-
(1991)
J. Gen. Microbiol.
, vol.137
, pp. 1911-1921
-
-
Lawrence, J.G.1
Ochman, H.2
Hartl, D.L.3
-
21
-
-
0031741481
-
Escherichia coli molecular phylogeny using the incongruence length difference test
-
Lecointre, G., Rachdi, L., Darlu, P., Denamur, E., 1998. Escherichia coli molecular phylogeny using the incongruence length difference test. Mol. Biol. Evol. 15, 1685-1695.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1685-1695
-
-
Lecointre, G.1
Rachdi, L.2
Darlu, P.3
Denamur, E.4
-
22
-
-
0035065311
-
Uninformative characters and apparent conflict between molecules and morphology
-
Lee, M.S.Y., 2001. Uninformative characters and apparent conflict between molecules and morphology. Mol. Biol. Evol. 18, 676-680.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 676-680
-
-
Lee, M.S.Y.1
-
23
-
-
0027287389
-
How clonal are bacteria?
-
Maynard Smith, J., Smith, N.H., O'Rourke, M., Spratt, B.G., 1993. How clonal are bacteria? Proc. Natl. Acad. Sci. USA 90, 4384-4388.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 4384-4388
-
-
Maynard Smith, J.1
Smith, N.H.2
O'Rourke, M.3
Spratt, B.G.4
-
24
-
-
0035546222
-
Lateral and oblique gene transfer
-
Ochman, H., 2001. Lateral and oblique gene transfer. Curr. Opin. Gen. Dev. 11, 616-619.
-
(2001)
Curr. Opin. Gen. Dev.
, vol.11
, pp. 616-619
-
-
Ochman, H.1
-
25
-
-
0021367325
-
Standard reference strains of Escherichia coli from natural populations
-
Ochman, H., Selander. R.K., 1984. Standard reference strains of Escherichia coli from natural populations. J. Bacteriol. 157, 690-692.
-
(1984)
J. Bacteriol.
, vol.157
, pp. 690-692
-
-
Ochman, H.1
Selander, R.K.2
-
26
-
-
0032965099
-
The link between phylogeny and virulence in Escherichia coli extraintestinal infection
-
Picard, B., Sevali-Garcia, J., Gouriou, S., Duriez, P., Brahimi, N., Bingen, E., Elion, J., Denamur, E., 1999. The link between phylogeny and virulence in Escherichia coli extraintestinal infection. Infect. Immun. 67, 546-553.
-
(1999)
Infect. Immun.
, vol.67
, pp. 546-553
-
-
Picard, B.1
Sevali-Garcia, J.2
Gouriou, S.3
Duriez, P.4
Brahimi, N.5
Bingen, E.6
Elion, J.7
Denamur, E.8
-
27
-
-
0034641731
-
Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characters
-
Pupo, G.M., Lan, R., Reeves, P.R., 2000. Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characters. Proc. Natl. Acad. Sci. USA 97, 10567-10572.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 10567-10572
-
-
Pupo, G.M.1
Lan, R.2
Reeves, P.R.3
-
28
-
-
0026822436
-
Phylogenetic inference based on matrix representation of trees
-
Ragan, M.A., 1992. Phylogenetic inference based on matrix representation of trees. Mol. Phylogenet. Evol. 1, 53-58.
-
(1992)
Mol. Phylogenet. Evol.
, vol.1
, pp. 53-58
-
-
Ragan, M.A.1
-
29
-
-
0034774688
-
Sources of incongruence among mammalian mitochondrial sequences: COII, COIII, and ND6 genes are main contributors
-
Schevchuk, N.A., Allard, M.W., 2001. Sources of incongruence among mammalian mitochondrial sequences: COII, COIII, and ND6 genes are main contributors. Mol. Phylogenet. Evol. 21, 43-54.
-
(2001)
Mol. Phylogenet. Evol.
, vol.21
, pp. 43-54
-
-
Schevchuk, N.A.1
Allard, M.W.2
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