Variation of the Intergenic Spacer (IGS) Region of Ribosomal DNA among Fusarium oxysporum formae speciales

Journal of Microbiology

Volumn 39, Issue 4, 2001, Pages 265-272

  Kim, Hyun Jung ^a   Choi, Yong Keel ^b   Min, Byung Re ^a  

^a Sangmyung University   (South Korea)

^b Hanyang University   (South Korea)

Author keywords

Formae speciales; Fusarium oxysporum; Intergenic spacer (igs); PCR RFLP

Indexed keywords

EID: 0347078366     PISSN: 12258873     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (25)

1. Alves-Santos, F.M., E.P. Benito, A.P. Eslava, and J.M. Diazminguez. 1999. Genetic diversity of Fusarium oxysporum strains from common bean fields in Spain. Appl. Environ. Microbiol. 3335-3340.
2. Appel, D.J. and T.R. Gordon. 1995. Intraspecific variation within populations of Fusarium oxysporum based on RFLP analysis of the intergenic spacer region of the rDNA. Experimen. Mycol. 19, 120-128.
3. Appel, D.J. and T.R. Gordon. 1996. Relationships among pathogenic and nonpathogenic isolates of Fusarium oxysporum based on the partial sequence of the intergenic spacer region of the ribosomal DNA. MPMI. 9, 125-138.
4. Banik, M.T., Volk, T.J., and Bursall, H.H. Jr. 1996. Armillaria species of the Olympic peninsula of Washington state, including conformation of North American Biological species. XI. Mycologia 88, 492-496.
5. Capesins, I. 1997. Analysis of the ribosomal RNA gene repeat from the moss Funaria hygrometrica. Plant Mol. Biol. 33, 559-564.
6. Carter, J.P., H.N. Rezanoor, A.E. Desjardins, and P. Nicolson. 2000. Variation in Fusarium gramineaum isolates from Nepal associated with their host of origin. Plant Pathol. 49, 452-460.
7. Edel, V, Steinbeg C., N. Gautheron, and C. Alabouvette. 1997. Populations of nonpathogenic Fusarium oxysporum associated with roots of four plant species compared to soilborne populations. Ecology and Population Biology 87, 693-697.
8. Guidot A., Lumini E., Debaud J.C., and R. Marmeisse. 1999. The nuclear ribosomal DNA intergenic spaces as a target sequence to study intraspecific diversity of the ectomycorrhizal basidiomycete Hebeloma cylindrosporum directly on Pinus roof systems. Appl. Environ. Microbiol. 65, 903-909.
9. Harrington, T.C. and Wingfield, B.D. 1995. A PCR-based identification method for species of Armillaria. Mycologia 87, 280-288.
10. Hills, D.M. and Dixon, M.T. 1991. Ribosomal DNA: molecular evolution and phylogenetic inference. Q. Rev. Biol. 66, 411-453.
11. Kim, D.H., R.D. Martyn, and C.W. Magill. 1993. Mitochon- drial DNA (mtDNA)-Relatedness among formae speciales of Fusarium oxysporun in the Cucubitaceae. Phytopathology 83, 91-97.
12. Kistler, H.C. and E.A. Momol. 1990. Molecular genetics of plant pathogenic Fusarium oxysporum. p. 49-54. In R. C. Ploetz (ed.), Fusarium wilt of Banana, American Phytopathological Society, St. Paul. Minnesota.
13. Kistler, H.C., E.A. Momol, and U. Benny. 1991. Repetitive genomic sequences for determining relatedness among strains of Fuisarium oxysporum. Phytopathology 81, 331-336.
14. Kistler, H.C. 1997. Genetic diversity in the plant-pathogenic fungus Fusarium oxysporum. Phytopathology 87, 474-479.
15. Kistler, H.C. 2001. Evolution of host specificity in Fusarium oxysporum. p. 70-82. In B.A. Summerell, J.F. Leslie, D. Backhouse, W.L. Bryden, and L.W. Burgess (eds.), Fusarium-P.E. Nelson Memorial Symposium, The American Phytopathological Society. St. Paul. Minnesota.
16. Lee, Young-Mi, Y.K. Choi, and B.R. Min. 2000. PCR-RFLP and sequence analysis of the rDNA ITS region in the Fusarium spp. J. Microbiol. 38, 66-73.
17. Min, B.R., K.A. Kim, and Y.K. Choi. 1998. Electrophoretic karyotypes of Fusarium oxysporum formae speciales. J. Microbiol. 36, 14-19.
18. Morina F.I., S.C. Jong, and J.L. Haffman. 1993. PCR amplification of the 3′ external transcribed and intergenic spacers of the ribosomal DNA repeat unit in three species of Sacchromyces. FEMS Microbiol. Letters 108, 259-264.
19. Namiki, F., T. Shiomi, T. Kayamura, and T. Tsuge. 1994. Characterization of the formae speciales of Fusarium oxysporum causing wilts of Cucurbits by DNA fingerprinting with nuclear repetitive DNA sequences. Appl. Environ. Microbiol. 60, 2684-2691.
20. Reed, K.M., J.D. Hackett, and R.B. Phillips. 2000. Comparative analysis of intra-individual and inter-species DNA sequence variation in Salmonid ribosomal DNA cistron. Gene 249, 115-125.
21. Snyder, W.C. and H.N. Hansen. 1940. The species concept in Fusarium. Ann. J. Bot. 27, 64-67.
22. Selosse, M.A., G. Costa, C.D. Battista, EL. Tacon, and F. Marfin. 1996. Meiotic segregation and recombination of the intergenic spacer of the ribosomal DNA in the ectomycorrhizal basidiomycete Laccaria bicolor. Curr. Genet. 30, 332-337.
23. Terashima, K., Kawashima Y., J.Y. Cha, and K. Miura. 1998. Identification of Armillaria species from Hokkaido by analysis of the intergenic spacer (IGS) region of ribosomal DNA using PCR-RFLP. Mycoscience 39, 179-183.
24. Volk, T.J., Burdsall, H.H. Jr., and Banik, M. T. 1996. Armillaria nabsnona, a new species from western North America. Mycologia 88, 484-491.
25. White, T.J., T.D. Brans, S. Lee, and J. Taylor. 1990. Amplification and direct sequencing of fungal ribosomal genes from phylogenetics. p315-322. In Innis M.A., Gelfraud, D.H., Sninsky, J.J., and White, T.J. (eds.) PCR protocols. Academic Press. Sandiego, California.