Intron-less processed Pcdhα genes in the central nervous system

Biochemical and Biophysical Research Communications

Volumn 313, Issue 3, 2004, Pages 775-783

  Sugino, Hidehiko ^a,b   Miyazaki, Mitsuhiro ^a,b   Yagi, Takeshi ^a,b,c  

^a OSAKA UNIVERSITY   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^c NATIONAL INSTITUTE FOR PHYSIOLOGICAL SCIENCES   (Japan)

Author keywords

28S ribosome; Intron less; LINE1; Pcdh ; Retrotransposition

Indexed keywords

CADHERIN; COMPLEMENTARY DNA; DNA FRAGMENT; MESSENGER RNA; NUCLEOTIDE; PRIMER DNA; SUCROSE; DNA;

ANIMAL TISSUE; ARTICLE; BRAIN; CENTRAL NERVOUS SYSTEM; DNA LIBRARY; EXON; GENE; GENE AMPLIFICATION; GENE DUPLICATION; GENE ISOLATION; GENE LIBRARY; GENE LOCUS; GENE SEQUENCE; INTEGRATION; INTRON; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROMOTER REGION; REVERSE TRANSCRIPTION; ANIMAL; BINDING SITE; BIOLOGICAL MODEL; C57BL MOUSE; GENETICS; MALE; METABOLISM; MOLECULAR CLONING; TISSUE DISTRIBUTION; TRANSPOSON;

ANIMALS; BINDING SITES; BRAIN; CADHERINS; CENTRAL NERVOUS SYSTEM; CLONING, MOLECULAR; DNA; DNA TRANSPOSABLE ELEMENTS; DNA, COMPLEMENTARY; EXONS; GENE LIBRARY; INTRONS; MALE; MICE; MICE, INBRED C57BL; MODELS, GENETIC; POLYMERASE CHAIN REACTION; PROMOTER REGIONS (GENETICS); RNA, MESSENGER; TISSUE DISTRIBUTION;

EID: 0347063989     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbrc.2003.11.170     Document Type: Article

References (23)

1. Kohmura N., Senzaki K., Hamada S., Kai N., Yasuda R., Watanabe M., Ishii H., Yasuda M., Mishina M., Yagi T. Diversity revealed by a novel family of cadherins expressed in neurons at a synaptic complex. Neuron. 20:1998;1137-1151.
2. Sugino H., Hamada S., Yasuda R., Tuji A., Matsuda Y., Fujita M., Yagi T. Genomic organization of the family of CNR cadherin genes in mice and humans. Genomics. 63:2000;75-87.
3. Wu Q., Maniatis T. A striking organization of a large family of human neural cadherin-like cell adhesion genes. Cell. 97:1999;779-790.
4. Wu Q., Zhang T., Cheng J.F., Kim Y., Grimwood J., Schmutz J., Dickson M., Noonan J.P., Zhang M.Q., Myers R.M., Maniatis T. Comparative DNA sequence analysis of mouse and human protocadherin gene clusters. Genome Res. 11:2001;389-404.
5. Yagi T., Takeichi M. Cadherin superfamily genes: functions, genomic organization, and neurologic diversity. Genes Dev. 15:2000;1169-1180.
6. Tonegawa S. Somatic generation of antibody diversity. Nature. 302:1983;575-581.
7. Dawid I.B., Rebbert M.L. Nucleotide sequences at the boundaries between gene and insertion regions in the rDNA of Drosophila melanogaster. Nucleic Acids Res. 9:1981;5011-5020.
8. Rae P.M., Kohorn B.D., Wade R.P. The 10. kb Drosophila virilis 28S rDNA intervening sequence is flanked by a direct repeat of 14 base pairs of coding sequence Nucleic Acids Res. 8:1980;3491-3504.
9. Voliva C.F., Jahn C.L., Comer M.B., Hutchison C.A., Edgell M.H. The L1Md long interspersed repeat family in the mouse: almost all examples are truncated at one end. Nucleic Acids Res. 11:1983;8847-8859.
10. Tasic B., Nabholz C.E., Baldwin K.K., Kim Y., Rueckert E.H., Ribich S.A., Cramer P., Wu Q., Axel R., Maniatis T. Promoter choice determines splice site selection in protocadherin alpha and gamma pre-mRNA splicing. Mol. Cell. 10:2002;21-33.
11. Maas S., Melcher T., Herb A., Seeburg P.H., Keller W., Krause S., Higuchi M., O'Connell M.A. Structural requirements for RNA editing in glutamate receptor pre-mRNAs by recombinant double-stranded RNA adenosine deaminase. J. Biol. Chem. 271:1996;12221-12226.
12. Melcher T., Maas S., Herb A., Sprengel R., Seeburg P.H., Higuchi M. A mammalian RNA editing enzyme. Nature. 379:1996;460-464.
13. Melcher T., Maas S., Herb A., Sprengel R., Higuchi M., Seeburg P.H. RED2, a brain-specific member of the RNA-specific adenosine deaminase family. J. Biol. Chem. 271:1996;31795-31798.
14. Esnault C., Maestre J., Heidmann T. Human LINE retrotransposons generate processed pseudogenes. Nat. Genet. 24:2000;363-367.
15. Wei W., Gilbert N., Ooi S.L., Lawler J.F., Ostertag E.M., Kazazian H.H., Boeke J.D., Moran J.V. Human L1 retrotransposition: cis preference versus transcomplementation. Mol. Cell. Biol. 21:2001;1429-1439.
16. Hohjoh H., Singer M.F. Sequence-specific single-strand RNA binding protein encoded by the human LINE-1 retrotransposon. EMBO J. 16:1997;6034-6043.
17. Miyatani S., Shimamura K., Hatta M., Nagafuchi A., Nose A., Matsunaga M., Hatta K., Takeichi M. Neural cadherin: role in selective cell-cell adhesion. Science. 245:1989;631-635.
18. Yoshida-Noro C., Suzuki N., Takeichi M. Molecular nature of the calcium-dependent cell-cell adhesion system in mouse teratocarcinoma and embryonic cells studied with a monoclonal antibody. Dev. Biol. 101:1984;19-27.
19. ′ sequence Cell. 111:2002;433-444.
20. Kurumizaka H., Ikawa S., Nakada M., Enomoto R., Kagawa W., Kinebuchi T., Yamazoe M., Yokoyama S., Shibata T. Homologous pairing and ring and filament structure formation activities of the human Xrcc2/Rad51D complex. J. Biol. Chem. 277:2002;14315-14320.
21. Kurumizaka H., Ikawa S., Nakada M., Eda K., Kagawa W., Takata M., Takeda S., Yokoyama S., Shibata T. Homologous-pairing activity of the human DNA-repair proteins Xrcc3.Rad51C. Proc. Natl. Acad. Sci. USA. 98:2001;5538-5543.
22. Deans B., Griffin C.S., Maconochie M., Thacker J. Xrcc2 is required for genetic stability, embryonic neurogenesis and viability in mice. EMBO J. 19:2000;6675-6685.
23. Hirayama T., Sugino H., Yagi T. Somatic mutations of synaptic cadherin (CNR family) transcripts in the nervous system. Genes Cells. 6:2001;151-164.