Structural studies of Proteus mirabilis catalase in its ground state, oxidized state and in complex with formic acid

Acta Crystallographica - Section D Biological Crystallography

Volumn 59, Issue 12, 2003, Pages 2163-2168

  Andreoletti, Pierre ^a   Pernoud, Anaïs ^b   Sainz, Germaine ^c   Gouet, Patrice ^b   Jouve, Hélène Marie ^d  

^a Avidis SA   (France)

^b INSTITUT DE BIOLOGIE ET CHIMIE DES PROTÉINES   (France)

^c EUROPEAN SYNCHROTRON RADIATION FACILITY   (France)

^d INSTITUT DE BIOLOGIE STRUCTURALE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; CATALASE; ENZYME INHIBITOR; FORMIC ACID; FORMIC ACID DERIVATIVE; HEME; WATER;

ARTICLE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; COMPARATIVE STUDY; DRUG ANTAGONISM; ELECTRICITY; ENZYMOLOGY; OXIDATION REDUCTION REACTION; PROTEUS MIRABILIS; X RAY CRYSTALLOGRAPHY;

AMINO ACIDS; BINDING SITES; CATALASE; CRYSTALLOGRAPHY, X-RAY; ELECTROSTATICS; ENZYME INHIBITORS; FORMIC ACIDS; HEME; MODELS, MOLECULAR; OXIDATION-REDUCTION; PROTEUS MIRABILIS; WATER;

MIRABILIS; PROTEUS MIRABILIS;

EID: 0347062344     PISSN: 09074449     EISSN: None     Source Type: Journal    
DOI: 10.1107/S0907444903019620     Document Type: Article

References (37)

1. Aalten, D. M. F. van, Bywater, R., Findlay, J. B. C., Hendlich, M., Hooft, R. W. W. & Vriend, G. (1996). J. Comput. Aided Mol. Des. 10, 255-262.
2. Andreoletti, P., Gambarelli, S., Sainz, G., Stojanoff, V., White, C., Desfonds, G., Gagnon, J., Gaillard, J. & Jouve, H. M. (2001). Biochemistry, 40, 13734-13743.
3. Andreoletti, P., Sainz, G., Jaquinod, M., Gagnon, J. & Jouve, H. M. (2003). Proteins, 50, 261-271.
4. Bravo, J., Fita, I., Gouet, P., Jouve, H. M., Melik-Adamyan, W. & Murshudov, G. N. (1997). Oxidative Stress and the Molecular Biology of Antioxidant Defences, edited by J. G. Scandalios, pp. 407-445. Cold Spring Harbor, USA: Cold Spring Harbor Laboratory Press.
5. Bravo, J., Mate, M. J., Schneider, T., Switala, J., Wilson, K., Loewen, P. C. & Fita, I. (1999). Proteins, 34, 155-166.
6. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T. & Warren, G. L. (1998). Acta Cryst. D54, 905-921.
7. Chance, B. (1950). Biochem. J. 46, 387-402.
8. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
9. Dunford, H. B. (1999). Heme Peroxidases. New York: John Wiley & Sons.
10. Esnouf, R. M. (1997). J. Mol. Graph. 15, 132-134.
11. Fita, I. & Rossmann, M. G. (1985). J. Mol. Biol. 185, 21-37.
12. Gouet, P., Jouve, H. M. & Dideberg, O. (1995). J. Mol. Biol. 249, 933-954.
13. Gouet, P., Jouve, H. M., Williams, P. A., Andersson, I., Andreoletti, P., Nussaume, L. & Hajdu, J. (1996). Nature Struct. Biol. 3, 951-956.
14. Hershberg, R. D. & Chance, B. (1975). Biochemistry, 14, 3885-3891.
15. Hewson, W. J. & Hager, L. P. (1979). The Porphyrins, edited by D. Dolphin, Vol. 7, pp. 295-332. New York: Academic Press.
16. Ivancich, A., Jouve, H. M., Sartor, B. & Gaillard, J. (1997). Biochemistry, 36, 9356-9364.
17. Jones, P. (2001). J. Biol. Chem. 276, 13791-13796.
18. Jouve, H. M., Andreoletti, P., Gouet, P., Hajdu, J. & Gagnon, J. (1997). Biochimie, 79, 667-671.
19. Jouve, H. M., Beaumont, E, Léger, I., Foray, J. & Pelmont J. (1989). Biochem. Cell Biol. 67, 271-277.
20. Jouve, H. M., Gaillard, J. & Pelmont, J. (1984). Can. J. Biochem. Cell Biol. 62, 935-944.
21. Jouve, H. M., Gouet, P., Boudjada, N., Buisson, G., Kahn, R. & Duee, E. (1991). J. Mol. Biol. 221, 1075-1077.
22. Maj, M., Loewen, P. & Nicholls, P. (1998). Biochim. Biophys. Acta, 1384, 209-222.
23. Mate, M. J., Zamocky, M., Nykyri, L. M., Herzog, C., Alzari, P. M., Betzel, C., Koller, F. & Fita, I. (1999). J. Mol. Biol. 286, 135-149.
24. Melik-Adamyan, W., Bravo, J., Carpena, X., Switala, J., Mate, M. J., Fita, I. & Loewen, P. C. (2001). Proteins, 44, 270-281.
25. Millar, F., Wrigglesworth, J. M. & Nicholls, P. (1981). Eur. J. Biochem. 117, 13-17.
26. Murshudov, G. N., Melik-Adamyan, W. R., Grebenko, A. I., Barynin, V. V., Vagin, A. A., Vainshtein, B. K., Dauter, Z. & Wilson, K. S. (1992). FEBS Lett. 312, 127-131.
27. Nicholls, P. (1961). Biochem. J. 81, 365-374.
28. Nicholls, P., Fita, I. & Loewen, P. C. (2001). Adv. Inorg. Biochem. 51, 51-106.
29. Nicholls, P. & Schonbaum, G. R. (1963). The Enzymes, edited by P D. Boyer, H. Lardy & K. Myrback, Vol. 8, pp. 147-225. New York: Academic Press.
30. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
31. Poulos, T. L. (2000). The Porphyrin Handbook, edited by K. M. Kadish, K. M. Smith & R. Guilard, Vol. 4, pp. 189-218. New York: Academic Press.
32. Putnam, C. D., Arvai, A. S., Bourne, Y. & Tainer, J. A. (2000). J. Mol. Biol. 296, 295-309.
33. Roussel, A. & Cambillau, C. (1989). Silicon Graphics Geometry Partners Directory, pp. 77-79. Mountain View, CA, USA: Silicon Graphics.
34. Schonbaum, G. R. & Chance, B. (1976). The Enzymes, edited by P D. Boyer, Vol. 13, pp. 363-408. New York: Academic Press.
35. Switala, J. & Loewen, P. C. (2002). Arch. Biochem. Biophys. 401, 145-154.
36. Vuk-Pavlovic, S. & Williams-Smith, D. L. (1977). Biochemistry, 16, 5465-5470.
37. Williams-Smith, D. L. & Morrison, P. J. (1975). Biochim. Biophys. Acta, 405, 253-261.