Phylogenetic relationship of the genus Gilbertella and related genera within the order mucorales based on 5.8 S ribosomal DNA sequences

Acta Biologica Hungarica

Volumn 54, Issue 3-4, 2003, Pages 393-402

  Papp, T ^a   Ács, Klára ^a   Nyilasi, Ildikó ^a   Nagy, Erzsébet ^a   Vagvolgyi Cs ^a  

^a UNIVERSITY OF SZEGED   (Hungary)

Author keywords

Choanephoraceae; Gilbertella; Gilbertellaceae; Mucoraceae; Phylogeny; rDNA

Indexed keywords

RIBOSOMAL SPACER DNA;

ARTICLE; CLASSIFICATION; DNA SEQUENCE; GENETICS; MUCORALES; PHYLOGENY; SEQUENCE HOMOLOGY;

DNA, RIBOSOMAL SPACER; MUCORALES; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID;

AMYLOMYCES ROUXII; BLAKESLEA TRISPORA; CHOANEPHORA; CHOANEPHORA INFUNDIBULIFERA; CHOANEPHORACEAE; FUNGI; GILBERTELLA; GILBERTELLA PERSICARIA; GILBERTELLACEAE; MUCOR; MUCOR CIRCINELLOIDES; MUCOR PIRIFORMIS; MUCORACEAE; MUCORALES; MYXOGASTRIA; PERSICARIA; POITRASIA CIRCINANS; RHIZOMUCOR; RHIZOMUCOR MIEHEI; RHIZOMUCOR PUSILLUS;

EID: 0346936155     PISSN: 02365383     EISSN: None     Source Type: Journal    
DOI: 10.1556/ABiol.54.2003.3-4.17     Document Type: Article

References (29)

1. Arx, von, J. A. (1982) On Mucoraceae s. str. and other families of the Mucorales. Sydowia 35, 10-26.
2. Benny, G. L. (1991) Gilbertellaceae, a new family of the Mucorales (Zygomycetes). Mycologia 83, 150-157.
3. Bruns, T. D., White, T. J., Taylor, J. W. (1991) Fungal molecular systematics. Annu. Rev. Ecol. System. 22, 525-564.
4. Eddy, E. D. (1925) A storage rot of peaches caused by a new species of Choanephora. Phytopathology 15, 607-610.
5. Felsenstein, J. (1993) PHYLIP. Phylogeny Inference Package. University of Washington, Seattle.
6. Ginting, C., Zehr, E. I., Westcott, S. W. (1996) Inoculum sources and characterisation of isolates of Gilbertella persicaria from peach fruit in South Carolina. Plant Dis. 80, 1129-1134.
7. Hawksworth, D. L., Sutton, B. C., Ainsworth, G. C. (1983) Ainsworth & Bisby's dictionary of the fungi. 7th Ed. Commonwealth Mycological Institute, Kew. 445.
8. Hesseltine, C. W. (1960) Gilbertella gen. nov. (Mucorales). Bull. Torrey Bot. Club. 87, 21-30.
9. Hseu, R.-S., Wang, H. H., Wang, H. F., Moncalvo, J. M. (1996) Differentiation and grouping of isolates of the Ganoderma lucidum complex by random amplified DNA-PCR compared with grouping on the basis of internal transcribed spacer sequences. Appl. Environ. Microbiol. 62, 1354-1363.
10. Johnson, J. (1999) Phylogenetic relationships within Lepiota sensu lato based on morphological and molecular data. Mycologia 91, 443-458.
11. Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitute through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120.
12. Kirk, P. M. (1984) A monograph of the Choanephoraceae. Mycol. Pap. 152, 1-61.
13. Leach, J., Finkelstein, D. B., Rambosek, J. A. (1986) Rapid miniprep of DNA from filamentous fungi. Fungal Genet. Newstett. 33, 32-33.
14. Liu, G. Y, Tzean, S. S. (1997) Phylogeny of the genus Arthrobotrys and allied nematode-trapping fungi based on rDNA sequences. Mycologia 89, 876-884.
15. Mitchell, T. G., White, T. J., Taylor, J. W. (1992) Comparison of 5.8S ribosomal DNA sequences among the basidiomycetous yeast genera Cystofilobasidium, Filobasidium and Filobasidiella. J. Med. Vet. Mycol. 30, 207-218.
16. O'Donnell, K. L., Ellis, J. J., Hesseltine, C. W., Hooper, G. R. (1977) Zygosporogenesis in Gilbertella persicaria. Can. J. Bot. 55, 662-675.
17. O'Donnell, K. L., Lutzoni, F. M., Ward, T. J. Benny, G. L. (2001) Evolutionary relationships among mucoralean fungi (Zygomycota): Evidence for family polyphyly on a large scale. Mycologia 93, 286-296.
18. Papp, T., Vágvölgyi, Cs., Kerényi, Z., Nagy, Á., Michailides, T. J. (1997) DNA amplification polymorphisms of the postharvest pathogen Mucor piriformis. Ant. van Leeuwenhoek 72, 167-173.
19. Saitou, N., Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenic trees. Mol. Biol. Evol. 4, 406-425.
20. Salazar, O., Schneider, J. H. M., Julián, M. C., Keijer, J., Rubio, V. (1999) Phylogenetic subgrouping of Rhizoctonia solani AG 2 isolates based on ribosomal ITS sequences. Mycologia 91, 459-467.
21. Schipper, M. A. A. (1975) On Mucor mucedo, Mucor flavus and related species. Stud. Mycol. 10, 1-33.
22. Schipper, M. A. A. (1978) On the genera Rhizomucor and Parasitella. Stud. Mycol. 17, 53-71.
23. Swofford, G. L., Olsen, G. J. (1990) Phylogenic reconstruction. In: Hillis, D. M. and Moritz, C. (eds) Molecular Systematics. Sinauer, Sunderland, Mass., USA, 411-501.
24. Thompson, J. D., Higgins, D. G., Gibson, T. J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucl. Acid Res. 22, 4673-4680.
25. Vágvölgyi, Cs., Vastag, M., Ács, K., Papp, T. (1999) Rhizomucor tauricus: a questionable species of the genus. Mycol. Res. 103, 1318-1322.
26. Vastag, M., Papp, T., Kasza, Zs., Vágvölgyi, Cs. (1998) Differentiation of Rhizomucor species by carbon source utilization and isoenzyme analysis. J. Clin. Microbiol. 36, 2153-2156.
27. Voigt, K., Cigelnik, E., O'Donnell, K. (1999) Phylogeny and PCR identification of clinically important Zygomycetes based on nuclear ribosomal-DNA sequence data. J. Clin. Microbiol. 37(12), 3957-3964.
28. Voigt, K., Wöstemeyer, J. (2001) Phylogeny and origin of 82 zygomycetes from all 54 genera of the Mucorales and Mortierellales based on combined analysis of actin and translation elongation factor EF-1α genes. Gene 270, 113-120.
29. White, T. J., Bruns, T., Lee, S., Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal genes for phylogenetics. In: Innis, M. A., Gelfand, D. H., Sninsky, J. J. and White, T. J. (eds) PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego, California, USA, 315-322.