Genomic organization of a novel root alliinase gene, ALL1, in onion

Gene

Volumn 325, Issue 1-2, 2004, Pages 17-24

  Do, Geum Sook ^a,b   Suzuki, Go ^a   Mukai, Yasuhiko ^a  

^a OSAKA KYOIKU UNIVERSITY   (Japan)

^b Yeungnam University   (South Korea)

Author keywords

Allium cepa; Bacterial artificial chromosome (BAC); G+C content; Root specific expression

Indexed keywords

ALLIIN LYASE;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; DNA GEL BLOT ANALYSIS; GENE EXPRESSION; GENE ISOLATION; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; ONION; PHYLOGENETIC TREE CONSTRUCTION METHOD; PLANT GENETICS; PLANT ROOT; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

ALLIUM; ALLIUM CEPA; BACTERIA (MICROORGANISMS); LILIOPSIDA;

EID: 0346789057     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2003.09.033     Document Type: Article

References (26)

1. Arumuganathan K., Earle E.D. Nuclear DNA content of some important plant species. Plant. Mol. Biol. Report. 9:1991;208-218.
2. Clark, S.A., 1993. Molecular cloning of a cDNA encoding alliinase from onion (Allium cepa L.). PhD dissertation. University of Canterbury, Christchurch, New Zealand.
3. Gilpin B.J., Leung D.W., Lancaster J.E. Nucleotide sequence of a nuclear clone of alliinase (accession no. L48614 ) from onion (PGR 95-125) Plant Physiol. 110:1995;336.
4. Ishiguro S., Nakamura K. The nuclear factor SP8BF binds to the 5′ upstream regions of three different genes coding for major proteins of sweet potato. Plant Mol. Biol. 18:1992;97-108.
5. Ishiguro S., Nakamura K. Characterization of a cDNA encoding a novel DNA-binding protein, SPF1, that recognizes SP8 sequences in the 5′ upstream regions of genes coding for sporamin and beta-amylase from sweet potato. Mol. Gen. Genet. 244:1994;563-571.
6. Lancaster J.E., Shaw M.L., Pither-Joyce M.D., McCallum J.A., McManus M.T. A novel alliinase from onion roots. Biochemical characterization and cDNA cloning. Plant Physiol. 122:2000;1269-1279.
7. Landshutter J., Lohmuller E.M., Knobloch K. Purification and characterization of a C-S-Lyase from ramson, the wild garlic Allium ursinum. Planta Med. 60:1994;343-347.
8. Lohmuller E.M., Landshuter J., Knobloch K. On the isolation and characterization of a C-S-Lyase preparation from leek Allium porrum. Planta Med. 60:1994;337-342.
9. Manabe T., Hasumi A., Sugiyama M., Yamazaki M., Saito K. Allinase (S-alk(en)yl-L-cysteine sulfoxide lyase) from Allium tuberosum (Chinese chive), purification, localization, cDNA cloning and heterologous functional expression. Eur. J. Biochem. 257:1998;21-30.
10. Nock L.P., Mazelis M. The C-S-lyases of higher plants: direct comparison of the physical properties of homogeneous alliin lyase of garlic (Allium sativum) and onion (Allium cepa). Plant Physiol. 85:1987;1079-1083.
11. Panstruga R., Buschges R., Piffanelli P., Schulze-Lefert P. A contiguous 60 kb genomic stretch from barley reveals molecular evidence for gene islands in a monocot genome. Nucleic Acids Res. 26:1998;1056-1062.
12. Rogers S.O., Bendich A.J. Extraction of milligram amounts of DNA from fresh, herbarium and mummified plant tissues. Plant Mol. Biol. 5:1988;69-76.
13. SanMiguel P., Tikhonov A., Jin Y.K., Motchoulskaia N., Zakharov D., Melake Berhan A., Springer P.S., Edwards K.J., Lee M., Avramova Z., Bennetzen J.L. Nested retrotransposons in the intergenic regions of the maize genome. Science. 274:1996;765-768.
14. m. Funct. Integr. Genomics. 2:2002;70-80.
15. Sasaki T.et al. The genome sequence and structure of rice chromosome 1. Nature. 420:2002;312-316.
16. 9 haplotype of Brassica campestris (syn. rapa). Genetics. 153:1999;391-400.
17. Suzuki G., Ura A., Saito N., Do G.S., Seo B.B., Yamamoto M., Mukai Y. BAC FISH analysis in Allium cepa. Genes & Genet. Syst. 76:2001;251-255.
18. Suzuki G., Do G.S., Mukai Y. Efficient storage and screening system for onion BAC clones. Breed. Sci. 52:2002;157-159.
19. Suzuki G., Moriyama M., Fujioka K., Yamamoto M., Subrahmanyam N.C., Li Z., Appels R., Morell M., Mukai Y., Rahman S. The starch branching enzyme I locus from Aegilops tauschii, the donor of the D genome to wheat. Funct. Integr. Genomics. 3:2003;69-75.
20. The Arabidopsis Genome Initiative Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature. 408:2000;796-815.
21. Tikhonov A.P., SanMiguel P.J., Nakajima Y., Gorenstein N.M., Bennetzen J.L., Avramova Z. Colinearity and its exceptions in orthologous adh regions of maize and sorghum. Proc. Natl. Acad. Sci. U. S. A. 96:1999;7409-7414.
22. Turnbull K.-M., Turner M., Mukai Y., Yamamoto M., Morell M.K., Appels R., Rahman S. The organization of genes tightly linked to the Ha locus in Aegilops tauschii, the D-genome donor to wheat. Genome. 46:2003;330-338.
23. van Damme E.J.M., Smeets K., Torrekens S., Van Leuven F., Peumans W.J. Isolation and characterization of alliinase cDNA clones from garlic (Allium sativum L.) and related species. Eur. J. Biochem. 209:1992;751-757.
24. van Leeuwen H., Monfort A., Zhang H.-B., Puigdomenech P. Identification and characterization of a melon genomic region containing a resistance gene cluster from a constructed BAC library. Microcolinearity between Cucumis melo and Arabidopsis thaliana. Plant Mol. Biol. 51:2003;703-718.
25. Yamamoto M., Mukai Y. High-resolution mapping in wheat and rye by FISH on extended DNA fibers. Proc. 9th Int. Wheat Genet. Symp. Saskatoon. 1:1998;12-16.
26. Yang Z.-N., Ye X.-R., Molina J., Roose M.L., Mirkov T.E. Sequence analysis of a 282-kilobase region surrounding the citrus tristeza virus resistance gene (Ctv) locus in Poncirus trifoliata L. RAF. Plant Physiol. 131:2003;482-492.