A visual DNA chip for simultaneous detection of hepatitis B virus, hepatitis C virus and human immunodeficiency virus type-1

Biosensors and Bioelectronics

Volumn 19, Issue 7, 2004, Pages 685-692

  Wen, Ji Kai ^a   Zhang, Xian En ^a   Cheng, Zhi ^a   Liu, Hong ^a   Zhou, Ya Feng ^a   Zhang, Zhi Ping ^a   Yang, Ji Hong ^b   Deng, Jiao Yu ^a  

^a INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^b Wuhan Centres Dis Prev and Contr ^*  (China)

Author keywords

Alkaline phosphatase; Biotin and avidin system; DNA chip; Hepatitis B virus (HBV); Hepatitis C virus (HCV); Human immunodeficiency virus type 1 (HIV 1); Multiplex nested array anchored primer PCR

Indexed keywords

ARRAYS; BLOOD; DNA; ENZYMES; IMMUNOLOGY; RNA; VIRUSES;

ENZYME SUBSTRATES;

BIOSENSORS;

5 BROMO 4 CHLORO 3 INDOYLPHOSPHATE; 5 [N (N BIOTINYLAMINOCAPROYL) EPSILON 3 AMINOALLYL] 2 DEOXYURIDINE 5 TRIPHOSPHATE; ALKALINE PHOSPHATASE; AVIDIN; BIOTIN; DEOXYURIDINE TRIPHOSPHATE DERIVATIVE; DNA FRAGMENT; INDICATOR; NITROBLUE TETRAZOLIUM; PHOSPHATE; UNCLASSIFIED DRUG; VIRUS DNA;

ARTICLE; BLOOD SAMPLING; DNA MICROARRAY; ENZYME SUBSTRATE; HEPATITIS B; HEPATITIS B VIRUS; HEPATITIS C; HEPATITIS C VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1; NONHUMAN; POLYMERASE CHAIN REACTION; PRECIPITATION; REVERSE TRANSCRIPTION; VIRUS DETECTION; VIRUS GENOME;

HEPATITIS B VIRUS; HEPATITIS C VIRUS; HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1; RNA VIRUSES;

EID: 0346725087     PISSN: 09565663     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0956-5663(03)00264-1     Document Type: Article

References (18)

1. Adessi C., Matton G., Ayala G., Turcatti G., Mermod J.J., Mayer P., Kawashima E. Solid phase DNA amplification: characterisation of primer attachment and amplification mechanisms. Nucleic Acids Res. 28(20):2000;e87.
2. Albert J., Fenyo E.M. Simple, sensitive, and specific detection of human immunodeficiency virus type 1 in clinical specimens by polymerase chain reaction with nested primers. J. Clin. Microbiol. 28(7):1990;1560-1564.
3. Brownie J., Shawcross S., Theaker J., Whitcombe D., Ferrie R., Newton C., Little S. The elimination of primer-dimer accumulation in PCR. Nucleic Acids Res. 25(16):1997;3235-3241.
4. Chamberlain J.S., Gibbs R.A., Ranier J.E., Nguyen P.N., Caskey C.T. Deletion screening of the Duchenne muscular dystrophy locus via multiplex DNA amplification. Nucleic Acids Res. 16(23):1988;11141-11156.
5. Coutlee F., Yang B.Z., Bobo L., Mayur K., Yolken R., Viscidi R. Enzyme immunoassay for detection of hybrids between PCR-amplified HIV-1 DNA and a RNA probe: PCR-EIA. AIDS Res. Hum. Retroviruses. 6(6):1990;775-784.
6. Defoort J.P., Martin M., Casano B., Prato S., Camilla C., Fert V. Simultaneous detection of multiplex-amplified human immunodeficiency virus type 1 RNA, hepatitis C virus RNA, and hepatitis B virus DNA using a flow cytometer microsphere-based hybridization assay. J. Clin. Microbiol. 38(3):2000;1066-1071.
7. Huber M., Losert D., Hiller R., Harwanegg C., Mueller M.W., Schmidt W.M. Detection of single base alterations in genomic DNA by solid phase polymerase chain reaction on oligonucleotide microarrays. Anal. Biochem. 299(1):2001;24-30.
8. Fang, K.T., Wang, Y., 1993. Number-Theoretic Methods in Statistics. Chapman & Hall, London.
9. Meng Q., Wong C., Rangachari A., Tamatsukuri S., Sasaki M., Fiss E., Cheng L., Ramankutty T., Clarke D., Yawata H., Sakakura Y., Hirose T., Impraim C. Automated multiplex assay system for simultaneous detection of hepatitis B virus DNA, hepatitis C virus RNA, and human immunodeficiency virus type 1 RNA. J. Clin. Microbiol. 39(8):2001;2937-2945.
10. Mirkin C.A., Letsinger R.L., Mucic R.C., Storhoff J.J. A DNA-based method for rationally assembling nanoparticles into macroscopic materials. Nature. 382(6592):1996;607-609.
11. Park S.J., Taton T.A., Mirkin C.A. Array-based electrical detection of DNA with nanoparticle probes. Science. 22;295(5559):2002;1503-1506.
12. Polz M.F., Cavanaugh C.M. Bias in template-to-product ratios in multitemplate PCR. Appl. Environ. Microbiol. 64(10):1998;3724-3730.
13. Rehman F.N., Audeh M., Abrams E.S., Hammond P.W., Kenney M., Boles T.C. Immobilization of acrylamide-modified oligonucleotides by co-polymerization. Nucleic Acids Res. 27(2):1999;649-655.
14. Rogers Y.H., Jiang-Baucom P., Huang Z.J., Bogdanov V., Anderson S., Boyce-Jacino M.T. Immobilization of oligonucleotides onto a glass support via disulfide bonds: a method for preparation of DNA microarrays. Anal. Biochem. 266(1):1999;23-30.
15. Schmunis G.A., Zicker F., Pinheiro F., Brandling-Bennett D. Risk for transfusion-transmitted infectious diseases in Central and South America. Emerg. Infect. Dis. 4(1):1998;5-11.
16. Tao S.C., Zhang X.E., Liu H., Li T.X., Zhang Z.P., Hu Q.X., Liang B.F. Multiplex PCR for simultaneous detection of human carcinoma-related viruses. Anal. Lett. 35(7):2002;1149-1162.
17. Westin L., Xu X., Miller C., Wang L., Edman C.F., Nerenberg M. Anchored multiplex amplification on a microelectronic chip array. Nat. Biotechnol. 18(2):2000;199-204.
18. Westin L., Miller C., Vollmer D., Canter D., Radtkey R., Nerenberg M., O'Connell J.P. Antimicrobial resistance and bacterial identification utilizing a microelectronic chip array. J. Clin. Microbiol. 39(3):2001;1097-1104.