Nonelectrophoretic method for high-throughput HLA-DRB1 group genotyping

BioTechniques

Volumn 36, Issue 1, 2004, Pages 148-151

  Hampe, Jochen ^a   Valentonyte, Ruta ^a   Manaster, Carl ^a   Teuber, Markus ^a   Jenisch, Stefan ^a   Entz, Patrizia ^b   Nagy, Marion ^c   Schreiber, Stefan ^a  

^a UNIVERSITY OF KIEL   (Germany)

^b MAX DELBRÜCK CENTER FOR MOLECULAR MEDICINE   (Germany)

^c CHARITÉ UNIVERSITÄTSMEDIZIN BERLIN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

HLA DR ANTIGEN;

ALLELE; ARTICLE; COMPUTER PROGRAM; FLUORESCENCE; GENE AMPLIFICATION; GENOTYPE; HUMAN; POLYMERASE CHAIN REACTION;

EID: 0346655247     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/04361dd01     Document Type: Article

References (14)

1. Becker, K.G., R.M. Simon, J.E. Bailey-Wilson, B. Freidlin, W.E. Biddison, H.F. McFarland, and J.M. Trent. 1998. Clustering of non-major histocompatibility complex susceptibility candidate loci in human autoimmune diseases. Proc. Natl. Acad. Sci. USA 95:9979-9984.
2. Hampe, J., S.H. Shaw, R. Saiz, N. Leysens, A. Lantermann, S. Mascheretti, N.J. Lynch, A.J.S. MacPherson, et al. 1999. Linkage of inflammatory bowel disease to human chromosome 6p. Am. J. Hum. Genet. 65:1647-1655.
3. Bodmer, J.G., S.G.E. Marsh, E. Albert, W.F. Bodmer, B. Dupont, H.A. Erlich, B. Mach, W.R. Mayr, et al. 1991. Nomenclature for factors of the HLA system. Tissue Antigens 39:1-13.
4. Marsh, S.G.E., E.D. Albert, W.F. Bodmer, R.E. Bontrop, B. Dupont, H.A. Erlich, D.E. Geraghty, J.A. Hansen, et al. 2002. Nomenclature for factors of the HLA system. Eur. J. Immunogenet. 29:463-515.
5. Consolandi, C., E. Busti, C. Pera, L. Delfino, G.B. Ferrara, R. Bordoni, B. Castiglioni, L. Rossi Bernardi, et al. 2003. Detection of HLA polymorphisms by ligase detection reaction and a universal array format: a pilot study for low resolution genotyping. Hum. Immunol. 64:168-178.
6. Feolo, M., T.C. Fuller, M. Taylor, J.J. Zone, and S.L. Neuhausen. 2001. A strategy for high throughput HLA-DQ typing. J. Immunol. Methods 258:65-71.
7. Slateva, K., H.A. Elsner, M. Albis-Camps, and R. Blasczyk. 2001. HLA-DRB fluorotyping by dark quenching and automated analysis. Tissue Antigens 58:250-254.
8. Moran, P., D.A. Dightman, and L.K. Park. 1998. Nonelectrophoretic genotyping using allele-specific PCR and a dsDNA-specific dye. BioTechniques 24:206-212.
9. Hampe, J., A. Wollstein, T. Lu, H.J. Frevel, M. Will, C. Manaster, and S. Schreiber. 2001. An integrated system for high throughput TaqMan based SNP genotyping. Bioinformatics 17:654-655.
10. Matise, T.C., R. Sachidanandam, A.G. Clark, L. Kruglyak, E. Wijsman, J. Kakol, S. Buyske, B. Chui, et al. 2003. A 3.9-centimorgan-resolution human single-nucleotide polymorphism linkage map and screening set. Am. J. Hum. Genet. 73:271-284.
11. Nurmi, J., M. Kiviniemi, M. Kujanpaa, M. Sjoroos, J. Ilonen, and T. Lovgren. 2001. High-throughput genetic analysis using time-resolved fluorometry and closed-tube detection. Anal. Biochem. 299:211-217.
12. Kimura, A. and T. Sasazuki. 1991. Eleventh International Histocompatibility Workshop Reference Protocol for the HLA DNA-Typing Technique, p. 397-419. Oxford University Press, Oxford.
13. Wu, J., B.B. Griffith, S. Bassinger, C. Moehlenkamp, S.G. Brodie, Y. Wu, G.G. Gribble, G.M. Troup, and T.M. Williams. 1996. Strategies for unambiguous detection of allelic heterozygosity via direct DNA sequencing of PCR products: application to the HLA DRB1 locus. Mol. Diagn. 1:89-98.
14. Wu, J. and T.M. Williams. 2002. DRB1/3/5 locus sequence based allele identification. In M.G.J. Tilanus, J.A. Hansen, and C. Hurley (Eds.), IHWG Technical Manual Genomic Analysis of the Human MHC - DNA-Based Typing for HLA Alleles and Linked Polymorphisms. International Histocompatibility Working Group, Seattle.