FLAGdb++: A database for the functional analysis of the Arabidopsis genome

Nucleic Acids Research

Volumn 32, Issue DATABASE ISS., 2004, Pages

  Samson, Franck ^a   Brunaud, Véronique ^a   Duchêne, Sylvain ^a   De Oliveira, Yannick ^a   Caboche, Michel ^a   Lecharny, Alain ^a   Aubourg, Sébastien ^a  

^a UNIVERSITÉ D EVRY VAL D ESSONNE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARTICLE; CHROMOSOME STRUCTURE; FLAGDB; GENE FUNCTION; GENE LOCATION; GENE LOCUS; GENE PROBE; GENE SEQUENCE; GENETIC DATABASE; INFORMATION PROCESSING; INTERNET; NONHUMAN; PLANT GENETICS; PREDICTION; PRIORITY JOURNAL;

ARABIDOPSIS; CHROMOSOMES, PLANT; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; GENOME, PLANT; GENOMICS; INFORMATION STORAGE AND RETRIEVAL; INTERNET; USER-COMPUTER INTERFACE;

ARABIDOPSIS; EMBRYOPHYTA;

EID: 0346494839     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (17)

1. Rhee,S.Y., Beavis,W., Berardini,T.Z., Chen,G., Dixon,D., Doyle,A., Garcia-Hernandez,M., Huala,E., Lander,G., Montoya,M. et al. (2003) The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Res., 31, 224-228.
2. Stein,L.D., Mungall,C., Shu,S., Caudy,M., Mangone,M., Day,A., Nickerson,E., Stajich,J.E., Harris,T.W., Arva,A. et al. (2002) The generic genome browser: a building block for a model organism system database. Genome Res., 12, 1599-1610.
3. Berriman,M. and Rutherford,K. (2003) Viewing and annotating sequence data with Artemis. Brief. Bioinform., 4, 124-132.
4. Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 408, 796-815.
5. Biaudet,V., Samson,F. and Bessières,P. (1998) MICADO: an on-line integrative database for microbial genomes. Microb. Comp. Genomics, 3, 71.
6. Samson,F., Brunaud,V., Balzergue,S., Dubreucq,B., Lepiniec,L., Pelletier,G., Caboche,M. and Lecharny,A. (2002) FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants. Nucleic Acids Res., 30, 94-97.
7. Thareau,V., Déhais,P., Serizet,C., Hilson,P., Rouzé,P. and Aubourg,S. (2003) Automatic design of gene-specific sequence tags for genome-wide functional studies. Bioinformatics, in press.
8. Bateman,A., Birney,E., Cerruti,L., Durbin,R., Etwiller,L., Eddy,S.R., Griffiths-Jones,S., Howe,K.L., Marshall,M. and Sonnhammer,E.L. (2002) The Pfam protein families database. Nucleic Acids Res., 30, 276-280.
9. Nakai,K. and Horton,P. (1999) PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem. Sci., 2, 34-36.
10. Westbrook,J., Feng,Z., Chen,L., Yang,H. and Berman,H.M. (2003) The Protein Data Bank and structural genomics. Nucleic Acids Res., 31, 1489-1491.
11. Schwacke,R., Schneider,A., van der Graaff,E., Fischer,K., Catoni,E., Desimone,M., Frommer,W.B., Flugge,U.I. and Kunze,R. (2003) ARAMEMNON, a novel database for Arabidopsis integral membrane proteins. Plant Physiol., 131, 16-26.
12. Kyrpides,N.C. and Ouzounis,C.A. (1999) Whole-genome sequence annotation: 'Going wrong with confidence'. Mol. Microbiol., 32, 886-887.
13. Crowe,M.L., Serizet,C., Thareau,V., Aubourg,S., Rouzé,P., Hilson,P., Beynon,J., Weisbeek,P., van Hummelen,P., Reymond,P. et al. (2003) CATMA: a complete Arabidopsis GST database. Nucleic Acids Res., 31, 156-158.
14. Raes,J., Vandepoele,K., Simillion,C., Saeys,Y. and Van de Peer,Y. (2003) Investigating ancient duplication events in the Arabidopsis genome. J. Struct. Funct. Genomics, 3, 117-129.
15. Li,Y., Rosso,M.G., Strizhov,N., Viehoever,P. and Weisshaar,B. (2003) GABI-Kat SimpleSearch: a flanking sequence tag (FST) database for the identification of T-DNA insertion mutants in Arabidopsis thaliana. Bioinformatics, 19, 1441-1442.
16. Balzergue,S., Dubreucq,B., Chauvin,S., Le-Clainche,I., Le Boulaire,F., de Rose,R., Samson,F., Biaudet,V., Lecharny,A., Cruaud,C. et al. (2001) Improved PCR-walking for large-scale isolation of plant T-DNA borders. Biotechniques, 30, 496-504.
17. Brunaud,V., Balzergue,S., Dubreucq,B., Aubourg,S., Samson,F., Chauvin,S., Bechtold,N., Cruaud,C., DeRose,R., Pelletier,G. et al. (2002) T-DNA integration into the Arabidopsis genome depends on sequences of pre-insertion sites. EMBO Rep., 3, 1152-1157.