WILMA - Automated annotation of protein sequences

Bioinformatics

Volumn 20, Issue 1, 2004, Pages 127-128

  Prlić, Andreas ^a   Domingues, Francisco S ^b   Lackner, Peter ^a   Sippl, Manfred J ^a  

^a UNIVERSITY OF SALZBURG   (Austria)

^b MAX PLANCK INSTITUTE FOR INFORMATICS   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEOME;

ACCESS TO INFORMATION; AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; AUTOMATION; BIOINFORMATICS; CAENORHABDITIS ELEGANS; COMPUTER INTERFACE; COMPUTER PROGRAM; GENE SEQUENCE; INTERNET; NONHUMAN; ONTOGENY; PRIORITY JOURNAL; PROTEIN FUNCTION;

AMINO ACID SEQUENCE; DATABASE MANAGEMENT SYSTEMS; DATABASES, PROTEIN; DOCUMENTATION; GENE EXPRESSION PROFILING; INFORMATION STORAGE AND RETRIEVAL; MOLECULAR SEQUENCE DATA; PROTEINS; SEQUENCE ANALYSIS, PROTEIN; SOFTWARE; SYSTEMS INTEGRATION; USER-COMPUTER INTERFACE;

ARABIDOPSIS; ARABIDOPSIS THALIANA; CAENORHABDITIS; CAENORHABDITIS ELEGANS; HOMO; HOMO SAPIENS; MUS; MUS MUSCULUS; MUSCULUS;

EID: 0346463218     PISSN: 13674803     EISSN: None     Source Type: Journal    
DOI: 10.1093/bioinformatics/btg380     Document Type: Article

References (17)

1. Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
2. Apweiler,R., Attwood,T.K., Bairoch,A., Bateman,A., Birney,E., Biswas,M., Bucher,P., Cerutti,L., Corpet,F., Croning,M.D. et al. (2001) Nucleic Acids Res., 29, 37-40.
3. Ashburner,M., Ball,C.A., Blake,J.A., Botstein,D., Butler,H., Cherry,J.M., Davis,A.P., Dohnski,K., Dwight,S.S. and Eppig, J.T. (2000) Gene Ontology: tool for the unification of biology. The Gene Ontology consortium. Nat. Genet., 25, 25-29.
4. Attwood,T.K., Croning,M.D., Flower,D.R., Lewis,A.P., Mabey,J.E., Scordis,P., Selley,J.N. and Wright,W. (2000) PRINTS-S: the database formerly known as PRINTS. Nucleic Acids Res., 28, 225-227.
5. Bairoch,A. and Apweiler,R. (2001) The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 2000. Nucleic Acids Res., 28, 45-48.
6. Bateman,A., Birney,E., Durbin,R., Eddy,S.R., Howe,K.L. and Sonnhammer,E.L. (2000) The Pfam protein families database. Nucleic Acids Res., 28, 263-266.
7. Boeckmann,B., Bairoch,A., Apweiler,R., Blatter,M.C., Estreicher,A., Gasteiger,E., Martin,M.J., Michoud,K., O'Donovan,C., Phan,I. et al. (2003) The SWISS-PROT protein knowledge base and its supplement TrEMBL in 2003. Nucleic Acids Res., 31, 365-370.
8. Frishman,D., Albermann,K., Hani,J., Heumann,K., Metanomski,A., Zollner,A. and Mewes,H.W. (2001) Functional and structural genomics using PEDANT. Bioinformatics, 17, 44-57.
9. Gene Ontology (2002).
10. GOA (2003).
11. Henikoff,J.G., Greene,E.A., Pietrokovski,S. and Henikoff,S. (2000) Increased coverage of protein families with the blocks database servers. Nucleic Acids Res., 28, 228-230.
12. Hofmann,K., Bucher,P., Falquet,L. and Bairoch,A. (1999) The PROSITE database, its status in 1999. Nucleic Acids Res., 27, 215-219.
13. Hubbard,T., Barker,D., Birney,E., Cameron, G., Chen, Y., Clark, L., Cox, T., Cuff, J., Curwen, V., Down, T. et al. (2002) The Ensembl genome database project. Nucleic Acids Res., 30, 38-41.
14. IPI (2002).
15. Proteome AnalysisBI (2002).
16. Schultz,J., Copley,R.R., Doerks,T., Ponting,C.P. and Bork,P. (2000) SMART: a web-based tool for the study of genetically mobile domains. Nucleic Acids Res., 28, 231-234.
17. WORMPEP (2002).