Quantitative expression analysis of the cellular specificity of HECT-domain ubiquitin E3 ligases

Physiological Genomics

Volumn 2001, Issue 4, 2001, Pages 147-153

  Scarafia, Liliana E ^a   Winter, Andreas ^a   Swinney, David C ^a  

^a ROCHE BIOSCIENCE   (United States)

Author keywords

Expression profiling; HECT; Messenger RNA quantitation; TaqMan polymerase chain reaction; Ubiquitin E3 ligase

Indexed keywords

LIGASE; MESSENGER RNA; RNA; UBIQUITIN PROTEIN LIGASE;

AMINO ACID SEQUENCE; ARTICLE; CELL CULTURE; CELL LINE; COMPARATIVE STUDY; GENE EXPRESSION REGULATION; GENETICS; HUMAN; LEUKEMIA CELL LINE; METABOLISM; MOLECULAR GENETICS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; CELL LINE; GENE EXPRESSION REGULATION, ENZYMOLOGIC; HUMANS; JURKAT CELLS; LIGASES; MOLECULAR SEQUENCE DATA; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA; RNA, MESSENGER; SEQUENCE HOMOLOGY, AMINO ACID; TUMOR CELLS, CULTURED; UBIQUITIN-PROTEIN LIGASES;

EID: 0346449617     PISSN: 15312267     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (19)

1. Altschul SF, Gish W, Miller W, Myers EW, and Lipman DJ. Basic local alignment search tool. J Mol Biol 215:403-410, 1990.
2. Haas AL and Siepmann TL. Pathways of ubiquitin conjugation. FASEB J 11: 1257-1268, 1997.
3. Harvey KF and Kumar S. Nedd4-like proteins: an emerging family of ubiquitin-protein ligases implicated in diverse cellular functions. Trends Cell Biol 9: 166-169, 1999.
4. Heid CA, Stevens J, Livak KJ, and Williams PM. Real time quantitative PCR. Genome Res 6: 986-994, 1996.
5. Hicke L. Gettin' down with ubiquitin: turning off cell-surface receptors, transporters and channels. Trends Cell Biol 9: 107-112, 1999.
6. Holland PM, Abramson RD, Watson R, and Gelfand DH. Detection of specific polymerase chain reaction product by utilizing the 5′-3′ exonuclease activity of Thermus aquaticus DNA polymerase. Proc Natl Acad Sci USA 88: 7276-7280, 1991.
7. Kornitzer D and Ciechanover A. Modes of regulation of ubiquitin-mediated protein degradation. J Cell Physiol 182: 1-11, 2000.
8. Lehman AL, Nakatsu Y, Ching A, Bronson RT, Oakey RJ, Keiper-Hrynko N, Finger JN, Furham-Pierre D, Horton DB, Newton JM, Lyno MF, and Brilliant MH. A very large protein with diverse functional motifs is deficient in rjs (runty, jerky, sterile) mice. Proc Natl Acad Sci USA 95: 9436-9441, 1998.
9. Mitsui K, Nakanishi M, Ohtsuka S, Norwood TH, Okabayashi K, Miyamoto C, Tanaka D, Yoshimura A, and Ohtsubo M. A novel human gene encoding HECT domain and RCC1-like repeats interacts with cyclins and is potentially regulated by tumor suppressor proteins. Biochem Biophys Res Commun 266: 115-122, 1999.
10. Moynihan TP, Ardley HC, Leek JP, Thompson J, Brindle NS, Markham AF, and Robinson PA. Characterization of a human ubiquitin-conjugating enzyme gene UBE2L3. Mamm Genome 7: 520-525, 1996.
11. Moynihan TP, Cole CG, Dunham I, O'Neil L, Markham AF, and Robinson PA. Fine-mapping, genomic organization and transcript analysis of the human ubiquitin-conjugating enzyme gene UBE2L3. Genomics 51: 124-127, 1998.
12. Pirozzi G, McConnell SJ, Uveges AJ, Carter JM, Sparks AB, Kay BK, and Fowlkes DM. Identification of novel human WW domain-containing proteins by cloning of ligand targets. J Biol Chem 272: 14611-14616, 1997.
13. Rosa JL, Casaroli-Marano RP, Buckler AJ, Vilaro S, and Barbacid M. p619, a giant protein related to the chromosome condensation regulator RCC1, stimulates guanine nucleotide exchange in ARF1 and Rab proteins. EMBO J 15: 4262-4273, 1996.
14. Schwarz SE, Rosa JL, and Scheffner M. Characterization of human hect domain family members and their interaction with UBCH5 and UBCH7. J Biol Chem 273: 12148-12154, 1998.
15. + channel deleted in Liddle's syndrome. EMBO J 15: 2371-2380, 1996.
16. Velculescu VE, Madden SL, Zhang L, Lash AE, Yu J, Rago C, Lal A, Wang CJ, Beaudry GA, Ciriello KM, Cook BP, Dufault MR, Ferguson AT, Gao Y, He T, Hermeking H, Hiraldo SK, Hwang PM, Lopez MA, Luderer HF, Mathews B, Petroziello JM, Poliak K, Zawel L, Zhang W, Zhang X, Zhou W, Haluska FG, Jen J, Sukumar S, Landes GM, Riggins GJ, Vogelstein B, and Kinzler KW. Analysis of human transcriptomes. Nat Genet 23: 387-388, 1999.
17. Warrington JA, Nair A, Mahadevappa M, and Tsyganskaya M. Comparison of human adult and fetal expression and identification of 535 housekeeping/maintenance genes. Physiol Genomics 2: 143-147, 2000.
18. Yokouchi M, Kondo T, Houghton A, Bartkiewicz M, Home WC, Zhang H, Yoshimura A, and Baron R. Ligand-induced ubiquitination of the epidermal growth factor receptor involves the interaction of the c-Cbl RING finger and UbchH7. J Biol Chem 274: 31707-31712, 1999.
19. Zhu H, Kavsak P, Abdollah S, Wrana JL, and Thomsen GH. A SMAD ubiquitin ligase targets the BMP pathway and affects embryonic pattern formation. Nature 400: 687-692, 1999.