Determination of the stability of complexes between DNA and the thiazole orange derivatives TO6 and TOTO by surface-enhanced resonance Raman spectroscopy

Biospectroscopy

Volumn 3, Issue 3, 1997, Pages 207-213

  Nissum, M ^a   Jacobsen, J P ^a   Nielsen, O Faurskov ^b   Jensen, P Waage ^a  

^a UNIVERSITY OF SOUTHERN DENMARK   (Denmark)

^b UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

DNA; Intercalation; Surface enhanced resonance Raman spectroscopy; Thiazole orange derivatives; TO6; TOTO

Indexed keywords

EID: 0346369432     PISSN: 10754261     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1520-6343(1997)3:3<207::AID-BSPY4>3.0.CO;2-2     Document Type: Article

References (21)

1. H. S. Rye, S. Yue, D. E. Wemmer, M. A. Quesada, R. P. Haugland, R. A. Mathies, and A. N. Glazer, "Stable fluorescent complexes of double-stranded DNA with bis-intercalating asymmetric cyanine dyes: properties and applications," Nucleic Acids Res., 20, 2803-2812 (1992).
2. S. C. Benson, P. Singh, and A. N. Glazer, "Heterodimeric DNA-binding dyes designed for energy transfer: synthesis and spectroscopic properties," Nucleic Acids Res., 21, 5727-5735 (1993).
3. S. C. Benson, R. A. Mathies, and A. N. Glazer, "Heterodimeric DNA-binding dyes designed for energy transfer: stability and applications of the DNA complexes," Nucleic Acids Res., 21, 5720-5726 (1993).
4. H. S. Rye, S. Yue, M. A. Quesada, R. P. Haugland, R. A. Mathies, and A. N. Glazer, "Picogram detection of stable dye-DNA intercalation complexes with two-color laser-excited confocal fluorescence gel scanner," Methods Enzymol., 217, 414-431 (1992).
5. H. S. Rye, J. M. Dabora, M. A. Quesada, R. A. Mathies, and A. N. Glazer, "Fluorometric assay using dimeric dyes for double- and single-stranded DNA and RNA with picogram sensitivity," Anal. Biochem., 208, 144-150 (1993).
6. G. Smulevich and A. Feis, "Surface-enhanced resonance Raman spectra of Adriamycin, 11-deoxycarminomycin, their model chromophores, and their complexes with DNA," J. Phys. Chem., 90, 6388-6392 (1986).
7. J. Aubard, M. A. Schwaller, J. Pantigny, J. P. Marsault, and G. Lévi, "Surface-enhanced Raman spectroscopy of ellipticine, 2-N-methylellipticinium and their complexes with DNA," J. Raman Spectrosc., 23, 373-377 (1992).
8. I. Nabiev, I. Chourpa, and M. Manfait, "Comparative studies of antitumor DNA intercalating agents, aclacinomycin and saintopin, by means of surface-enhanced Raman scattering spectroscopy," J. Phys. Chem., 98, 1344-1350 (1994).
9. I. Nabiev, I. Chourpa, J.-F. Riou, C. H. Nguyen, F. Lavelle, and M. Manfait, "Molecular interactions of DNA-topoisomerase I and II inhibitor with DNA and topoisomerases and in ternary complexes: binding modes and biological effects for intoplicine derivatives," Biochemistry, 33, 9013-9023 (1994).
10. F. Zimmermann, B. Hossenfelder, J.-C. Panitz, and A. Wokaun, "SERRS study of acridine orange and its binding to DNA strands," J. Phys. Chem., 98, 12796-12804 (1994).
11. I. Nabiev, A. Baranov, I. Chourpa, A. Beljebbar, G. D. Sockalingum, and M. Manfait, "Does adsorption on the surface of a silver colloid perturb drug/ DNA interactions? Comparative SERS, FT-SERS, and resonance Raman study of mitoxantrone and its derivatives," J. Phys. Chem., 99, 1608-1613 (1995).
12. I. Chourpa and M. Manfait, "Specific molecular interactions of acridine drugs in complexes with topoisomerase II and DNA. SERS and resonance Raman study of m-AMSA in comparison with o-AMSA," J. Roman Spectrosc., 26, 813-819 (1995).
13. S. Sánchez-Cortés, P. Miskovsky, D. Jancura, and A. Bertoluzza, "Specific interactions of antiretroviraly active drug hypericin with DNA as studied by surface-enhanced resonance Raman spectroscopy," J. Phys. Chem., 100, 1938-1944 (1996).
14. J. P. Jacobsen, J. B. Pedersen, L. F. Hansen, and D. E. Wemmer, "Site selective bis-intercalation of a homodimeric thiazole orange dye in DNA oligonucleotides," Nucleic Acids Res., 23, 753-760 (1995).
15. L. F. Hansen, L. K. Jensen, and J. P. Jacobsen, "Bis-intercalation of a homodimeric thiazole orange dye in DNA in symmetrical pyrimidine-pyrimidine-purine-purine oligonucleotides," Nucleic Acids Res., 24, 859-867 (1996).
16. T. Brown and D. J. S. Brown, "Modern machine-aided methods of synthesis" in Oligonucleotides and Analogues. A Practical Approach, ed. by F. Eckstein, Oxford University Press, Oxford, 1991, pp. 1-23.
17. G. Smulevich and T. G. Spiro, "Surface-enhanced Raman spectroscopic evidence that adsorption on silver particles can denature heme proteins," J. Phys. Chem., 89, 5168-5173 (1985).
18. J. A. Creighton, C. G. Blatchford, and M. G. Albrecht, "Plasma resonance enhancement of Raman scattering by pyridine adsorbed on silver or gold sol particles of size comparable to the excitation wavelength," J. Chem. Soc., Faraday Trans. 2, 75, 790-798 (1979).
19. P. C. Lee and D. Meisel, "Adsorption and surface-enhanced Raman of dyes on silver and gold sols," J. Phys. Chem., 86, 3391-3395 (1982).
20. M. Nissum, O. F. Nielsen, F. Jensen, and P. W. Jensen, "Surface-enhanced Raman spectroscopic investigations of thiazole orange derivatives using visible and near-infrared excitation," J. Raman Spectrosc., 26, 1009-1017 (1995).
21. H. P. Spielmann, D. E. Wemmer, and J. P. Jacobsen, "The solution structure of a DNA complex with the fluorescent bis-intercalator TOTO determined by NMR spectroscopy," Biochemistry, 34, 8542-8553 (1995).