cis-Acting Sequences that Contribute to the Synthesis of Relaxed-Circular DNA of Human Hepatitis B Virus

Journal of Virology

Volumn 78, Issue 2, 2004, Pages 642-649

  Liu, Ning ^a   Ji, Lin ^a,b   Maguire, Megan L ^a   Loeb, Daniel D ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b University of Wisconsin Madison   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

3' R PREGENOMIC RNA; 5' R PREGENOMIC RNA; CIRCULAR DNA; CIS ACTING ELEMENT; RNA DR1; RNA DR2; RNA EPSILON; RNA PRECURSOR; UNCLASSIFIED DRUG; VIRUS DNA;

ARTICLE; BINDING SITE; CHIMERA; CIS ACTING SEQUENCE; CONTROLLED STUDY; DNA SEQUENCE; DNA SYNTHESIS; DNA TEMPLATE; DONOR SITE; GENE DELETION; GENE SWITCHING; GENETIC VARIABILITY; HEPADNAVIRIDAE; HEPATITIS B VIRUS; HEPATITIS VIRUS; HUMAN; HUMAN CELL; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REVERSE TRANSCRIPTION; SOUTHERN BLOTTING; VIRUS GENOME;

DNA REPLICATION; DNA, CIRCULAR; DNA, VIRAL; ENHANCER ELEMENTS (GENETICS); GENOME, VIRAL; HEPATITIS B VIRUS; HUMANS; SEQUENCE DELETION; TEMPLATES, GENETIC; TUMOR CELLS, CULTURED;

EID: 0346057881     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.78.2.642-649.2004     Document Type: Article

References (36)

1. Bartenschlager, R., M. Junker-Niepmann, and H. Schaller. 1990. The P gene product of hepatitis B virus is required as a structural component for genomic RNA encapsidation. J. Virol. 64:5324-5332.
2. Bartenschlager, R., and H. Schaller. 1992. Hepadnaviral assembly is initiated by polymerase binding to the encapsidation signal in the viral RNA genome. EMBO J. 11:3413-3420.
3. Beasley, R. P., L. Y. Hwang, C. C. Lin, and C. S. Chien. 1981. Hepatocellular carcinoma and hepatitis B virus. A prospective study of 22,707 men in Taiwan. Lancet ii:1129-1133.
4. Ganem, D., and R. Schneider. 2001. Hepadnaviridae: the viruses and their replication, p. 2923-2969. In D. Knipe, P. Howley, D. Griffin, R. Lamb, M. Martin, B. Roizman, and S. Strauss (ed.), Fields virology, 4th ed. Lippincott Williams & Wilkins, Philadelphia, Pa.
5. Girones, R., P. J. Cote, W. E. Hornbuckle, B. C. Tennant, J. L. Gerin, R. H. Purcell, and R. H. Miller. 1989. Complete nucleotide sequence of a molecular clone of woodchuck hepatitis virus that is infectious in the natural host. Proc. Natl. Acad. Sci. USA 86:1846-1849.
6. Havert, M. B., L. Ji, and D. D. Loeb. 2002. Analysis of duck hepatitis B virus reverse transcription indicates a common mechanism for the two template switches during plus-strand DNA synthesis. J. Virol. 76:2763-2769.
7. Havert, M. B., and D. D. Loeb. 1997. cis-Acting sequences in addition to donor and acceptor sites are required for template switching during synthesis of plus-strand DNA for duck hepatitis B virus. J. Virol. 71:5336-5344.
8. Hirsch, R. C., J. E. Lavine, L. J. Chang, H. E. Varmus, and D. Ganem. 1990. Polymerase gene products of hepatitis B viruses are required for genomic RNA packaging as well as for reverse transcription. Nature 344:552-555.
9. Junker-Niepmann, M., R. Bartenschlager, and H. Schaller. 1990. A short cis-acting sequence is required for hepatitis B virus pregenome encapsidation and sufficient for packaging of foreign RNA. EMBO J. 9:3389-3396.
10. Kane, M. A. 1998. Status of hepatitis B immunization programmes in 1998. Vaccine 16(Suppl.):S104-S108.
11. Lien, J.-M., C. E. Aldrich, and W. S. Mason. 1986. Evidence that a capped oligoribonucleotide is the primer for duck hepatitis B virus plus-strand DNA synthesis. J. Virol. 57:229-236.
12. Lien, J.-M., D. J. Petcu, C. E. Aldrich, and W. S. Mason. 1987. Initiation and termination of duck hepatitis B virus DNA synthesis during virus maturation. J. Virol. 61:3832-3840.
13. Liu, N., K. M. Ostrow, and D. D. Loeb. 2002. Identification and characterization of a novel replicative intermediate of heron hepatitis B virus. Virology 295:348-359.
14. Liu, N., R. Tian, and D. D. Loeb. 2003. Base pairing among three cis-acting sequences contributes to template switching during hepadnavirus reverse transcription. Proc. Natl. Acad. Sci. USA 100:1984-1989.
15. Loeb, D. D., K. J. Gulya, and R. Tian. 1997. Sequence identity of the terminal redundancies on the minus-strand DNA template is necessary but not sufficient for the template switch during hepadnavirus plus-strand DNA synthesis. J. Virol. 71:152-160.
16. Loeb, D. D., and R. Tian. 2001. Mutations that increase in situ priming also decrease circularization for duck hepatitis B virus. J. Virol. 75:6492-6497.
17. Loeb, D. D., R. Tian, and K. J. Gulya. 1996. Mutations within DR2 independently reduce the amount of both minus- and plus-strand DNA synthesized during duck hepatitis B virus replication. J. Virol. 70:8684-8690.
18. Loeb, D. D., R. Tian, K. J. Gulya, and A. E. Qualey. 1998. Changing the site of initiation of plus-strand DNA synthesis inhibits the subsequent template switch during replication of a hepadnavirus. J. Virol. 72:6565-6573.
19. Mueller-Hill, K., and D. D. Loeb. 2002. cis-Acting sequences 5E, M, and 3E interact to contribute to primer translocation and circularization during reverse transcription of avian hepadnavirus DNA. J. Virol. 76:4260-4266.
20. Nassal, M. 1992. The arginine-rich domain of the hepatitis B virus core protein is required for pregenome encapsidation and productive viral positive-strand DNA synthesis but not for virus assembly. J. Virol. 66:4107-4116.
21. Nassal, M., and A. Rieger. 1996. A bulged region of the hepatitis B virus RNA encapsidation signal contains the replication origin for discontinuous first-strand DNA synthesis. J. Virol. 70:2764-2773.
22. Perri, S., and D. Ganem. 1997. Effects of mutations within and adjacent to the terminal repeats of hepatitis B virus pregenomic RNA on viral DNA synthesis. J. Virol. 71:8448-8455.
23. Perri, S., and D. Ganem. 1996. A host factor that binds near the termini of hepatitis B virus pregenomic RNA. J. Virol. 70:6803-6809.
24. Pollack, J. R., and D. Ganem. 1994. Site-specific RNA binding by a hepatitis B virus reverse transcriptase initiates two distinct reactions: RNA packaging and DNA synthesis. J. Virol. 68:5579-5587.
25. Radziwill, G., W. Tucker, and H. Schaller. 1990. Mutational analysis of the hepatitis B virus P gene product: domain structure and RNase H activity. J. Virol. 64:613-620.
26. Seeger, C., D. Ganem, and H. Varmus. 1986. Biochemical and genetic evidence for the hepatitis B virus replication strategy. Science 232:477-484.
27. Seeger, C., and W. S. Mason. 2000. Hepatitis B virus biology. Microbiol. Mol. Biol. Rev. 64:51-68.
28. Staprans, S., D. D. Loeb, and D. Ganem. 1991. Mutations affecting hepadnavirus plus-strand DNA synthesis dissociate primer cleavage from translocation and reveal the origin of linear viral DNA. J. Virol. 65:1255-1262.
29. Summers, J., and W. S. Mason. 1982. Replication of the genome of a hepatitis B-like virus by reverse transcription of an RNA intermediate. Cell 29:403-415.
30. Summers, J., J. Smolec, and R. Snyder. 1978. A virus similar to human hepatitis B virus associated with hepatitis and hepatoma in woodchucks. Proc. Natl. Acad. Sci. USA 75:4533-4537.
31. Tang, H., and A. McLachlan. 2002. A pregenomic RNA sequence adjacent to DR1 and complementary to epsilon influences hepatitis B virus replication efficiency. Virology 303:199-210.
32. Tavis, J. E., and D. Ganem. 1995. RNA sequences controlling the initiation and transfer of duck hepatitis B virus minus-strand DNA. J. Virol. 69:4283-4291.
33. Tavis, J. E., S. Perri, and D. Ganem. 1994. Hepadnavirus reverse transcription initiates within the stem-loop of the RNA packaging signal and employs a novel strand transfer. J. Virol. 68:3536-3543.
34. Wang, G.-H., and C. Seeger. 1993. Novel mechanism for reverse transcription in hepatitis B viruses. J. Virol. 67:6507-6512.
35. Wang, G. H., and C. Seeger. 1992. The reverse transcriptase of hepatitis B virus acts as a protein primer for viral DNA synthesis. Cell 71:663-670.
36. Will, H., W. Reiser, T. Weimer, E. Pfaff, M. Büscher, R. Sprengel, R. Cattaneo, and H. Schaller. 1987. Replication strategy of human hepatitis B virus. J. Virol. 61:904-911.