메뉴 건너뛰기




Volumn 317, Issue 1, 2003, Pages 50-64

The conserved structures of the 5′ nontranslated region of Citrus tristeza virus are involved in replication and virion assembly

Author keywords

5 Nontranslated region; Closterovirus; CTV

Indexed keywords

5' UNTRANSLATED REGION; AMINO ACID SEQUENCE; ARTICLE; CITRUS TRISTEZAVIRUS; CLOSTEROVIRUS; CONTROLLED STUDY; ELECTRON MICROSCOPY; GENE MUTATION; GENE SEQUENCE; GENETIC TRANSFECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROGENY; PROTEIN SECONDARY STRUCTURE; PROTOPLAST; REPLICON; RNA STRUCTURE; RNA SYNTHESIS; STRUCTURE ANALYSIS; VIRION; VIRUS ASSEMBLY; VIRUS NUCLEOCAPSID; VIRUS REPLICATION; WILD TYPE;

EID: 0345735919     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virol.2003.08.018     Document Type: Article
Times cited : (26)

References (53)
  • 1
    • 0018094389 scopus 로고
    • The initiation of papaya mosaic virus assembly
    • Abouhaidar M., Bancroft J.B. The initiation of papaya mosaic virus assembly. Virology. 90:1978;54-59.
    • (1978) Virology , vol.90 , pp. 54-59
    • Abouhaidar, M.1    Bancroft, J.B.2
  • 3
    • 0037126619 scopus 로고    scopus 로고
    • Cell-to-cell movement and assembly of a plant closterovirus: Roles for the capsid proteins and Hsp70 homolog
    • Alzhanova D.V., Napuli A.J., Creamer R., Dolja V.V. Cell-to-cell movement and assembly of a plant closterovirus roles for the capsid proteins and Hsp70 homolog . EMBO J. 17:2001;6997-7007.
    • (2001) EMBO J. , vol.17 , pp. 6997-7007
    • Alzhanova, D.V.1    Napuli, A.J.2    Creamer, R.3    Dolja, V.V.4
  • 4
    • 0025049209 scopus 로고
    • A functional ribonucleoprotein complex forms around the 5′ end of poliovirus RNA
    • Andino A.H., Rieckhof G.E., Baltimore D. A functional ribonucleoprotein complex forms around the 5′ end of poliovirus RNA. Cell. 63:1990;369-380.
    • (1990) Cell , vol.63 , pp. 369-380
    • Andino, A.H.1    Rieckhof, G.E.2    Baltimore, D.3
  • 5
    • 0034745326 scopus 로고    scopus 로고
    • Polymorphism of the 5′ terminal region of citrus tristeza virus (CTV) RNA: Incidence of three sequence types in isolates of different origin and pathogenicity
    • Ayllón M.A., López C., Navas-Castillo J., Garnsey S.M., Guerri J., Flores R., Moreno P. Polymorphism of the 5′ terminal region of citrus tristeza virus (CTV) RNA incidence of three sequence types in isolates of different origin and pathogenicity . Arch. Virol. 146:2001;27-40.
    • (2001) Arch. Virol. , vol.146 , pp. 27-40
    • Ayllón, M.A.1    López, C.2    Navas-Castillo, J.3    Garnsey, S.M.4    Guerri, J.5    Flores, R.6    Moreno, P.7
  • 6
    • 0035868852 scopus 로고    scopus 로고
    • 5′ clover-leaf in poliovirus RNA is a cis-acting replication element required for negative-strand synthesis
    • Barton D.J., O'Donnell B.J., Flanegan J.B. 5′ clover-leaf in poliovirus RNA is a cis-acting replication element required for negative-strand synthesis. EMBO J. 15:2001;1439-1448.
    • (2001) EMBO J. , vol.15 , pp. 1439-1448
    • Barton, D.J.1    O'Donnell, B.J.2    Flanegan, J.B.3
  • 8
    • 0037791708 scopus 로고    scopus 로고
    • The 5′-proximal hairpin of turnip yellow mosaic virus RNA: Its role in translation and encapsidation
    • Bink H.H.J., Schirawski J., Haenni A.-L., Pleij C.W.A. The 5′-proximal hairpin of turnip yellow mosaic virus RNA its role in translation and encapsidation . J. Virol. 77:2003;7452-7458.
    • (2003) J. Virol. , vol.77 , pp. 7452-7458
    • Bink, H.H.J.1    Schirawski, J.2    Haenni, A.-L.3    Pleij, C.W.A.4
  • 9
    • 0030332528 scopus 로고    scopus 로고
    • Comparison of the replication of the positive-stranded RNA viruses of plants and animals
    • Buck K.W. Comparison of the replication of the positive-stranded RNA viruses of plants and animals. Adv. Virus Res. 47:1996;159-251.
    • (1996) Adv. Virus Res. , vol.47 , pp. 159-251
    • Buck, K.W.1
  • 10
    • 0037303672 scopus 로고    scopus 로고
    • Fine mapping of a cis-acting sequence element in yellow fever virus RNA that is required for RNA replication and cyclization
    • Corver J., Lenches E., Smith K., Robison R.A., Sando T., Strauss E.G., Strauss J.H. Fine mapping of a cis-acting sequence element in yellow fever virus RNA that is required for RNA replication and cyclization. J. Virol. 77:2003;2265-2270.
    • (2003) J. Virol. , vol.77 , pp. 2265-2270
    • Corver, J.1    Lenches, E.2    Smith, K.3    Robison, R.A.4    Sando, T.5    Strauss, E.G.6    Strauss, J.H.7
  • 11
    • 0032695133 scopus 로고    scopus 로고
    • Functions of the 3′-untranslated regions of positive strand RNA viral genomes
    • Dreher T.W. Functions of the 3′-untranslated regions of positive strand RNA viral genomes. Annu. Rev. Phytopathol. 37:1999;151-174.
    • (1999) Annu. Rev. Phytopathol. , vol.37 , pp. 151-174
    • Dreher, T.W.1
  • 12
    • 0029583229 scopus 로고
    • Interaction of host proteins with the plus-strand promoter of brome mosaic virus RNA-2
    • Duggal R., Hall T.C. Interaction of host proteins with the plus-strand promoter of brome mosaic virus RNA-2. Virology. 214:1995;638-641.
    • (1995) Virology , vol.214 , pp. 638-641
    • Duggal, R.1    Hall, T.C.2
  • 13
    • 0027966461 scopus 로고
    • Cis-acting sequences in the replication of plant viruses with plus-sense RNA genomes
    • Duggal R., Lahser F.C., Hall T.C. Cis-acting sequences in the replication of plant viruses with plus-sense RNA genomes. Annu. Rev. Phytopathol. 32:1994;287-309.
    • (1994) Annu. Rev. Phytopathol. , vol.32 , pp. 287-309
    • Duggal, R.1    Lahser, F.C.2    Hall, T.C.3
  • 15
    • 0027251504 scopus 로고
    • The secondary structure of the 5′-noncoding region of beet necrotic yellow vein virus RNA 3: Evidence for a role in viral RNA replication
    • Gilmer D., Allmang C., Ehresmann C., Guilley H., Richards K., Jonard G., Ehresmann B. The secondary structure of the 5′-noncoding region of beet necrotic yellow vein virus RNA 3 evidence for a role in viral RNA replication . Nucleic Acids Res. 21:1993;1389-1395.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 1389-1395
    • Gilmer, D.1    Allmang, C.2    Ehresmann, C.3    Guilley, H.4    Richards, K.5    Jonard, G.6    Ehresmann, B.7
  • 16
    • 0031468352 scopus 로고    scopus 로고
    • RNA promoters located on (-)-strands of a subviral RNA associated with turnip crinkle virus
    • Guan H., Song C., Simon A.E. RNA promoters located on (-)-strands of a subviral RNA associated with turnip crinkle virus. RNA. 3:1997;1401-1412.
    • (1997) RNA , vol.3 , pp. 1401-1412
    • Guan, H.1    Song, C.2    Simon, A.E.3
  • 17
    • 0030748943 scopus 로고    scopus 로고
    • A functional role for the conserved protonatable hairpins in the 5′ untranslated region of turnip yellow mosaic virus RNA
    • Hellendoorn K., Verlaan P.W.G., Pleij C.W.A. A functional role for the conserved protonatable hairpins in the 5′ untranslated region of turnip yellow mosaic virus RNA. J. Virol. 71:1997;8774-8779.
    • (1997) J. Virol. , vol.71 , pp. 8774-8779
    • Hellendoorn, K.1    Verlaan, P.W.G.2    Pleij, C.W.A.3
  • 18
    • 0033919960 scopus 로고    scopus 로고
    • Poliovirus requires precise 5′ end for efficient positive-strand RNA synthesis
    • Herold J., Andino R. Poliovirus requires precise 5′ end for efficient positive-strand RNA synthesis. J. Virol. 74:2000;6394-6400.
    • (2000) J. Virol. , vol.74 , pp. 6394-6400
    • Herold, J.1    Andino, R.2
  • 20
    • 0024520745 scopus 로고
    • Site-directed mutagenesis by overlap extension using polymerase chain reaction
    • Ho S.N., Hunt H.D., Horton R.M., Puller J.K., Pease L.R. Site-directed mutagenesis by overlap extension using polymerase chain reaction. Gene. 77:1989;51-59.
    • (1989) Gene , vol.77 , pp. 51-59
    • Ho, S.N.1    Hunt, H.D.2    Horton, R.M.3    Puller, J.K.4    Pease, L.R.5
  • 22
    • 0030001119 scopus 로고    scopus 로고
    • The 5′ nontranslated region of poato virus x RNA affects both genomic and subgenomic RNA synthesis
    • Kim K.-H., Hemenway C.L. The 5′ nontranslated region of poato virus x RNA affects both genomic and subgenomic RNA synthesis. J. Virol. 70:1996;5533-5540.
    • (1996) J. Virol. , vol.70 , pp. 5533-5540
    • Kim, K.-H.1    Hemenway, C.L.2
  • 23
    • 0036400236 scopus 로고    scopus 로고
    • Cellular protein binds to sequences near the 5′ terminus of potato virus X RNA that are important for replication
    • Kim K.-H., Kwon S.-J., Hemenway C.L. Cellular protein binds to sequences near the 5′ terminus of potato virus X RNA that are important for replication. Virology. 301:2002;305-312.
    • (2002) Virology , vol.301 , pp. 305-312
    • Kim, K.-H.1    Kwon, S.-J.2    Hemenway, C.L.3
  • 25
    • 0023500243 scopus 로고
    • Evidence implicating a tRNA heritage for the promoters of (+) strand RNA synthesis in brome mosaic virus and related viruses
    • Marsh L.E., Hall T.C. Evidence implicating a tRNA heritage for the promoters of (+) strand RNA synthesis in brome mosaic virus and related viruses. Cold Spring Harbor Symp. Quant. Biol. 52:1987;331-341.
    • (1987) Cold Spring Harbor Symp. Quant. Biol. , vol.52 , pp. 331-341
    • Marsh, L.E.1    Hall, T.C.2
  • 26
    • 0029839351 scopus 로고    scopus 로고
    • Unusual sequence relationships between two isolates of citrus tristeza virus
    • Mawassi M., Mietkiewska E., Goffman R., Yang G., Bar-Joseph M. Unusual sequence relationships between two isolates of citrus tristeza virus. J. Gen. Virol. 77:1996;2359-2364.
    • (1996) J. Gen. Virol. , vol.77 , pp. 2359-2364
    • Mawassi, M.1    Mietkiewska, E.2    Goffman, R.3    Yang, G.4    Bar-Joseph, M.5
  • 27
    • 0031058477 scopus 로고    scopus 로고
    • Position dependence of functional hairpins important for human immunodeficiency virus type 1 RNA encapsidation in vivo
    • McBride S.M., Panganiban A.T. Position dependence of functional hairpins important for human immunodeficiency virus type 1 RNA encapsidation in vivo. J. Virol. 71:1997;2050-2058.
    • (1997) J. Virol. , vol.71 , pp. 2050-2058
    • McBride, S.M.1    Panganiban, A.T.2
  • 28
    • 0033179152 scopus 로고    scopus 로고
    • Restoration of a stem-loop structure required for potato virus X RNA accumulation indicates selection for a mismatch and a GNRA tetraloop
    • Miller E.D., Kim K.-H., Hemenway C.L. Restoration of a stem-loop structure required for potato virus X RNA accumulation indicates selection for a mismatch and a GNRA tetraloop. Virology. 260:1999;342-353.
    • (1999) Virology , vol.260 , pp. 342-353
    • Miller, E.D.1    Kim, K.-H.2    Hemenway, C.L.3
  • 29
    • 0032484227 scopus 로고    scopus 로고
    • Stem-loop structure in the 5′ region of Potato virus X genome required for plus-strand RNA accumulation
    • Miller E.D., Plante C.A., Kim K.-H., Brown J.W., Hemenway C.L. Stem-loop structure in the 5′ region of Potato virus X genome required for plus-strand RNA accumulation. J. Mol. Biol. 284:1998;591-608.
    • (1998) J. Mol. Biol. , vol.284 , pp. 591-608
    • Miller, E.D.1    Plante, C.A.2    Kim, K.-H.3    Brown, J.W.4    Hemenway, C.L.5
  • 30
    • 0034691523 scopus 로고    scopus 로고
    • Synthesis of subgenomic RNAs by positive strand RNA viruses
    • Miller W.A., Koev G. Synthesis of subgenomic RNAs by positive strand RNA viruses. Virology. 273:2000;1-8.
    • (2000) Virology , vol.273 , pp. 1-8
    • Miller, W.A.1    Koev, G.2
  • 31
    • 0034715555 scopus 로고    scopus 로고
    • Partial purification and characterization of Cucumber necrosis virus and Tomato bushy stunt virus RNA-dependent RNA polymerases: Similarities and differences in template usage between tobamovirus and carmovirus RNA-dependent RNA polymerases
    • Nagy P.D., Pogany J. Partial purification and characterization of Cucumber necrosis virus and Tomato bushy stunt virus RNA-dependent RNA polymerases similarities and differences in template usage between tobamovirus and carmovirus RNA-dependent RNA polymerases . Virology. 276:2000;279-288.
    • (2000) Virology , vol.276 , pp. 279-288
    • Nagy, P.D.1    Pogany, J.2
  • 32
    • 0037321804 scopus 로고    scopus 로고
    • The 64-kilodalton capsid protein homolog of Beet yellows virus is required for assembly of virion tails
    • Napuli A.J., Alzhanova D.V., Doneanu C.E., Barofsky D.F., Koonin E.V., Dolja V.V. The 64-kilodalton capsid protein homolog of Beet yellows virus is required for assembly of virion tails. J. Virol. 77:2003;2377-2384.
    • (2003) J. Virol. , vol.77 , pp. 2377-2384
    • Napuli, A.J.1    Alzhanova, D.V.2    Doneanu, C.E.3    Barofsky, D.F.4    Koonin, E.V.5    Dolja, V.V.6
  • 33
    • 0034663136 scopus 로고    scopus 로고
    • Interaction between HSP70 homolog and filamentous virions of Beet yellows virus
    • Napuli A.J., Falk B.W., Dolja V.V. Interaction between HSP70 homolog and filamentous virions of Beet yellows virus. Virology. 274:2000;232-239.
    • (2000) Virology , vol.274 , pp. 232-239
    • Napuli, A.J.1    Falk, B.W.2    Dolja, V.V.3
  • 35
    • 0037213878 scopus 로고    scopus 로고
    • The RNA replication enhancer element of tombusviruses contains two interchangeable hairpins that are functional during plus-strand synthesis
    • Panavas T., Nagy P.D. The RNA replication enhancer element of tombusviruses contains two interchangeable hairpins that are functional during plus-strand synthesis. J. Virol. 77:2003;258-269.
    • (2003) J. Virol. , vol.77 , pp. 258-269
    • Panavas, T.1    Nagy, P.D.2
  • 36
    • 0037867847 scopus 로고    scopus 로고
    • Enhancement of RNA synthesis by promoter duplication in tombusviruses
    • Panavas T., Panaviene Z., Pogany J., Nagy P.D. Enhancement of RNA synthesis by promoter duplication in tombusviruses. Virology. 310:2003;118-129.
    • (2003) Virology , vol.310 , pp. 118-129
    • Panavas, T.1    Panaviene, Z.2    Pogany, J.3    Nagy, P.D.4
  • 38
    • 0026500564 scopus 로고
    • The requirement of a 5′ stem-loop structure in brome mosaic virus replication supports a new model for viral positive-strand RNA initiation
    • Pogue G.P., Hall T.C. The requirement of a 5′ stem-loop structure in brome mosaic virus replication supports a new model for viral positive-strand RNA initiation. J. Virol. 66:1992;674-684.
    • (1992) J. Virol. , vol.66 , pp. 674-684
    • Pogue, G.P.1    Hall, T.C.2
  • 39
    • 0026643534 scopus 로고
    • Requirement of ICR-like sequences in the replication of brome mosaic virus genomic RNA
    • Pogue G.P., Marsh L.E., Connel J.P., Hall T.C. Requirement of ICR-like sequences in the replication of brome mosaic virus genomic RNA. Virology. 188:1992;742-753.
    • (1992) Virology , vol.188 , pp. 742-753
    • Pogue, G.P.1    Marsh, L.E.2    Connel, J.P.3    Hall, T.C.4
  • 40
    • 0025002374 scopus 로고
    • Point mutations in the ICR2 motif of brome mosaic virus RNAs debilitate (+)-strand replication
    • Pogue G.P., Marsh L.E., Hall T.C. Point mutations in the ICR2 motif of brome mosaic virus RNAs debilitate (+)-strand replication. Virology. 178:1990;152-160.
    • (1990) Virology , vol.178 , pp. 152-160
    • Pogue, G.P.1    Marsh, L.E.2    Hall, T.C.3
  • 42
    • 0036384469 scopus 로고    scopus 로고
    • Mutational analysis of the replication signals in the 3′-nontranslated region of Citrus tristeza virus
    • Satyanarayana T., Gowda S., Ayllón M.A., Albiach-Martí M.R., Dawson W.O. Mutational analysis of the replication signals in the 3′-nontranslated region of Citrus tristeza virus. Virology. 300:2002;140-152.
    • (2002) Virology , vol.300 , pp. 140-152
    • Satyanarayana, T.1    Gowda, S.2    Ayllón, M.A.3    Albiach-Martí, M.R.4    Dawson, W.O.5
  • 43
    • 0042386764 scopus 로고    scopus 로고
    • Frameshift mutations in infectious cDNA clones of Citrus tristeza virus: A strategy to minimize toxicity of viral sequences to Escherichia coli
    • Satyanarayana, T., Gowda, S., Ayllón, M.A., Dawson, W.O., 2003. Frameshift mutations in infectious cDNA clones of Citrus tristeza virus: a strategy to minimize toxicity of viral sequences to Escherichia coli. Virology 313, 481-491.
    • (2003) Virology , vol.313 , pp. 481-491
    • Satyanarayana, T.1    Gowda, S.2    Ayllón, M.A.3    Dawson, W.O.4
  • 46
    • 0028222193 scopus 로고
    • The minimal 5′ sequence for in vitro initiation of papaya mosaic virus potexvirus assembly
    • Sit T.L., Leclerc D., Abouhaidar M. The minimal 5′ sequence for in vitro initiation of papaya mosaic virus potexvirus assembly. Virology. 199:1994;238-242.
    • (1994) Virology , vol.199 , pp. 238-242
    • Sit, T.L.1    Leclerc, D.2    Abouhaidar, M.3
  • 47
    • 0032813656 scopus 로고    scopus 로고
    • Initiation of genomic plus-strand RNA synthesis from DNA and RNA templates by a viral RNA-dependent RNA polymerase
    • Sivakumaran K., Kao C.C. Initiation of genomic plus-strand RNA synthesis from DNA and RNA templates by a viral RNA-dependent RNA polymerase. J. Virol. 73:1999;6415-6423.
    • (1999) J. Virol. , vol.73 , pp. 6415-6423
    • Sivakumaran, K.1    Kao, C.C.2
  • 48
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice . Nucleic Acids Res. 22:1994;4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 49
    • 0032929569 scopus 로고    scopus 로고
    • Lettuce infectious yellows virus: In vitro acquisition analysis using partially purified virions and the whitefuly, Bemisia tabaci
    • Tian T., Rubio L., Yeh H.-H., Crawford B., Falk B.W. Lettuce infectious yellows virus in vitro acquisition analysis using partially purified virions and the whitefuly, Bemisia tabaci . J. Gen. Virol. 80:1999;1111-1117.
    • (1999) J. Gen. Virol. , vol.80 , pp. 1111-1117
    • Tian, T.1    Rubio, L.2    Yeh, H.-H.3    Crawford, B.4    Falk, B.W.5
  • 50
    • 0033524331 scopus 로고    scopus 로고
    • Mutational analysis of cis-acting sequences in the 3′- and 5′-untranslated regions of red clover necrotic mosaic virus
    • Turner R.L., Buck K.W. Mutational analysis of cis-acting sequences in the 3′- and 5′-untranslated regions of red clover necrotic mosaic virus. Virology. 253:1999;115-124.
    • (1999) Virology , vol.253 , pp. 115-124
    • Turner, R.L.1    Buck, K.W.2
  • 51
    • 0029893966 scopus 로고    scopus 로고
    • Analysis of cis-acting elements in the 5′ leader sequence of alfalfa mosaic virus RNA3
    • van der Vossen E.A.G., Bol J.F. Analysis of cis-acting elements in the 5′ leader sequence of alfalfa mosaic virus RNA3. Virology. 220:1996;539-543.
    • (1996) Virology , vol.220 , pp. 539-543
    • Van Der Vossen, E.A.G.1    Bol, J.F.2
  • 52
    • 0035951298 scopus 로고    scopus 로고
    • An RNA domain within the 5′ untranslated region of the Tomato bushy stunt virus genome modulated viral RNA replication
    • Wu B., Vanti W.B., White K.A. An RNA domain within the 5′ untranslated region of the Tomato bushy stunt virus genome modulated viral RNA replication. J. Mol. Biol. 305:2001;741-756.
    • (2001) J. Mol. Biol. , vol.305 , pp. 741-756
    • Wu, B.1    Vanti, W.B.2    White, K.A.3
  • 53
    • 0002287019 scopus 로고    scopus 로고
    • Algorithms and thermodynamics for RNA secondary structure prediction. A practical guide
    • J. Barciszewski, & B.F.C. Clark. Dordrecht/Norwell, MA: Kluwer Academic Publishers
    • Zuker M., Mathews D.H., Turner D.H. Algorithms and thermodynamics for RNA secondary structure prediction. A practical guide. Barciszewski J., Clark B.F.C. RNA Biochemistry and Bio/Technology. 1999;11-43 Kluwer Academic Publishers, Dordrecht/Norwell, MA.
    • (1999) RNA Biochemistry and Bio/Technology , pp. 11-43
    • Zuker, M.1    Mathews, D.H.2    Turner, D.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.