An integrated YAC map of the human X chromosome

Genome Research

Volumn 6, Issue 10, 1996, Pages 943-955

  Crollius, Hugues Roest ^a,b   Ross, Mark T ^b,c   Grigoriev, Andrei ^a,b   Knights, Catherine J ^b   Holloway, Ele ^b,c   Misfud, Joseph ^b   Li, Kim ^b   Playford, Martin ^b   Gregory, Simon G ^c   Humphray, Sean J ^c   Coffey, Alison J ^c   See, Chee Gee ^d   Marsh, Sharon ^c   Vatcheva, Radost ^b   Kumlien, Johan ^b   Labella, Tullio ^b   Lam, Veronica ^b   Rak, Karl H ^a   Todd, Kieran ^a,b   Mott, Richard ^b,c   Graeser, D'Vorah ^b   Rappold, Gudrun ^g   Zehetner, Gunther ^a,b   Poustka, Annemarie ^e   Bentley, David R ^c   Monaco, Anthony P ^f   Lehrach, Hans ^a,b   more..

^a MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

^b IMPERIAL CANCER RESEARCH FUND   (United Kingdom)

^c WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^d UNIVERSITY COLLEGE LONDON   (United Kingdom)

^e GERMAN CANCER RESEARCH CENTER DKFZ   (Germany)

^f UNIVERSITY OF OXFORD   (United Kingdom)

^g Institut fur Humangenetik   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; AUTOSOMAL RECESSIVE DISORDER; CHROMOSOME MAP; DATA BASE; DNA FINGERPRINTING; DNA HYBRIDIZATION; FLUORESCENCE IN SITU HYBRIDIZATION; HUMAN; HUMAN CELL; INHERITANCE; MALE; PHENOTYPE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; X CHROMOSOME; YEAST ARTIFICIAL CHROMOSOME;

CHROMOSOME MAPPING; CHROMOSOMES, ARTIFICIAL, YEAST; CLONING, MOLECULAR; DNA FINGERPRINTING; HUMANS; IN SITU HYBRIDIZATION, FLUORESCENCE; MALE; X CHROMOSOME;

EID: 0345548141     PISSN: 10549803     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (41)

1. Albertsen, H.M., H. Abderrahim, H.M. Cann, J. Dausset, D. Lepaslier, and D. Cohen. 1990. Construction and characterization of a yeast artificial chromosome library containing 7 haploid human genome equivalents. Proc. Natl. Acad. Sci. 87: 4256-4260.
2. Anand, R., A. Villasante, and C. Tylersmith. 1989. Construction of yeast artificial chromosome libraries with large inserts using fractionation by pulsed-field gel-electrophoresis. Nucleic Acids Res. 17: 3425-3433.
3. Bassi, M.T., M.V. Schiaffino, A. Renieri, F. De Nigris, L Galli, M. Bruttini, M. Gebbia, A.A. Bergen, R.A. Lewis, and A. Ballabio. 1995. Cloning of the gene for ocular albinism type 1 from the distal short arm of the X chromosome. Nature Genet. 10: 13-19.
4. Bishop, C.E., G. Guellaen, D. Geldwerth, R. Voss, M. Fellous, and J. Weissenbach. 1983. Single-copy DNA sequences specific for the human Y chromosome: Nature 303: 831-832.
5. Burke, D.T., G.F. Carle, and M.V. Olson. 1987. Cloning of large segments of exogenous DNA into yeast by means of artificial chromosome vectors. Science 236:806-812.
6. Chumakov, I., P. Rigault, S. Guillou, P. Ougen, A. Billaut, G. Guasconi, P. Gervy, I. Legall, P. Soularue, L. Grinas, et al. 1992. Continuum of overlapping clones spanning the entire human chromosome 21q. Nature 359: 380-387.
7. Chumakov, I.M., P. Rigault, I. Le Gall, C. Bellané-Chantelot, A. Billault, S. Guillou, P. Soularue, G. Guasconi, E. Poullier, I. Gros, et al. 1995. A YAC contig map of the human genome. Nature (Suppl.) 377: 175-297.
8. Coffey, A.J., R.G. Roberts, E.D. Green, C.G. Cole, R. Butler, R. Anand, F. Giannelli, and D.R. Bentley. 1992. Construction of a 2.6-mb contig in yeast artificial chromosomes spanning the human dystrophin gene using an sts-based approach. Genomics 12: 474-484.
9. Coffey, A., S. Gregory, and C.G. Cole. 1996. Alu-PCR fingerprinting of YACs. In Methods in molecular biology. (ed. D. Markie), pp. 97-114. Human Press Inc., Totowa, NJ.
10. Cole, C.G., P.N. Goodfellow, M. Bobrow, and D.R. Bentley. 1991. Generation of novel sequence tagged sites (STSs) from discrete chromosomal regions using Alu-PCR. Genomics 10: 816-826.
11. Collins, J., C. Cole, L.J. Smink, C.L. Garett, M.A. Leversha, C.A. Soderlund, G.L. Maslen, L.A. Everett, K.M. Rice, A.J. Coffey, S.G. Gregory, and R. Gwilliam. 1995. A high density YAC contig map of human chromosome 22. Nature (Suppl.) 377: 367-379.
12. Dietrich, W.F., J. Miller, R. Steen, M.A. Merchant, D. Damron-Boles, Z. Husain, R. Dredge, M.J. Daly, K.A. Ingalls, T.J. O'Connor, C.A. Evans, M.M. DeAngelis, D.M. Levinson, L. Kruglyak, N. Goodman, N.G. Copeland, N.A. Jenkins, T.L. Hawkins, L. Stein, D.C. Page, and E. Lander. 1996. A comprehensive genetic map of the mouse genome. Nature 380: 149-152.
13. Doggett, N.A., L.A. Goodwin, J.G. Tesmer, L.J. Meincke, D.C. Bruce, L.M. Clark, M.R. Altherr, A.A. Ford, H. Chi, B.L. Marrone, et al. 1995. An integrated physical map of human chromosome 16. Nature (Suppl.) 377: 335-366.
14. Feinberg, A.P. and B. Vogelstein. 1983. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132: 6-13.
15. Ferrero, G.B., B. Franco, E.J. Roth, B.A. Firulli, G. Borsani, J. Delmas-Mata, J. Weissenbach, G. Halley, D. Schlessinger, A.C. Chinault, H.Y. Zoghbi, D.L. Nelson, and A. Ballabio. 1995. An integrated physical and genetic map of a 35 Mb region on chromosome Xp22.3-Xp21.3. Hum. Mol. Genet. 4: 1821-1827.
16. Foote, S., D. Vollrath, A. Hilton, and D.C. Page. 1992. The human Y chromosome - Overlapping DNA clones spanning the euchromatic region. Science 258: 60-66.
17. Gemmill, R.M., I. Chumakov, P. Scott, B. Waggoner, P. Rigault, J. Cypser, Q. Chen, J. Weissenbach, K. Gardiner, H. Wang, Y. Pekarsky, I. Le Gall, D. Le Paslier, S. Guillou, E. Li, L. Robinson, L. Hahner, S. Todd, D. Cohen, and H.A. Drabkin. 1995. A second-generation YAC contig map of human chromosome 3. Nature (Suppl.) 377: 299-320.
18. Hudson, T.J., L.D. Stein, S.S. Gerety, J. Ma, A.B. Castle, J. Silva, D.K. Slonim, R. Baptista, L. Kruglyak, S. Xu, X. Hu, A.M.E. Colbert, C. Rosenberg, et al. 1995. An STS-based map of the human genome. Science 270: 1945-1954.
19. The HYP consortium. 1995. A gene (PEX) with homologies to endopeptidases is mutated in patients with X-linked hypophosphatemic rickets. Nature Genet. 11: 130-136.
20. Korenberg, J.R. and M.C. Rykowski. 1988. Human genome organization - Alu, lines, and the molecular structure of metaphase chromosome bands. Cell 53: 391-400.
21. Krauter, K. K. Montgomery, S. Yoon, J. LeBlanc-Straceski, B. Renault, I. Marondel, V. Herdman, L. Cupelli, A. Banks, J. Lieman, J. Menninger, P. Bray-Ward, P. Nadkarni, J. Weissenbach, D. Le Paslier, P. Rigault, I. Chumakov, D. Cohen, P. Miller, D. Ward, and R. Kucherlapati. 1995. A second-generation YAC contig map of human chromosome 12. Nature (Suppl.) 377: 321-334.
22. Kumlien, J., A. Grigoriev, H. Roest Crollius, M.T. Ross, P.N. Goodfellow, and H. Lehrach. 1996. A radiation hybrid map spanning the entire human X chromosome integrating YACs, genes and STS markers. Mamm. Genome (in press).
23. Larin, Z., A.P. Monaco, and H. Lehrach. 1991. Yeast artificial chromosome libraries containing large inserts from mouse and human DNA. Proc. Natl. Acad. Sci. 88: 4123-4127.
24. Lee, J.T., A. Murgia, D.M. Sosnoski, I.M. Olivos, and R.L. Nussbaum. 1992. Construction and characterization of a yeast artificial chromosome library for Xpter-Xq27.3 - A systematic determination of cocloning rate and X chromosome representation. Genomics 12: 526-533.
25. Lehrach, H., R. Drmanac, J. Hoheisel, Z. Larin, G. Lennon, A.P. Monaco, D. Nizetic, G. Zehetner, and A. Poustka. 1990. Hybridization fingerprinting in genome mapping and sequencing. In Genome analysis (ed. K.E. Davies and S.M. Tilghman), Vol. 1, pp. 39-81. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
26. Lichter, P., T. Cremer, J. Borden, L. Manuelidis, and D.C. Ward. 1988. Delineation of individual human chromosomes in metaphase and interphase cells by in situ suppression hybridization using recombinant DNA libraries. Hum. Genet. 80: 224-234.
27. McKusick, V.A. 1994. Mendelian inheritance in man. Catalogs of human genes and genetic disorders, 11th ed. John Hopkins University Press, Baltimore, MD.
28. Maier, E., J. Hoheisel, L. McCarthy, R. Mott, A Grigoriev, A.P. Monaco, Z Larin, and H. Lehrach. 1992. Complete coverage of the Schizosaccharomyces pombe genome in yeast artificial chromosomes. Nature Genet. 1: 273-277.
29. Meier-Ewert, S., E. Maier, A. Ahmadi, J. Curtis, and H. Lehrach. 1993. An automated approach to generating expressed sequence catalogs. Nature 361: 375-376.
30. Mott, R., A. Grigoriev, E. Maier, J. Hoheisel, and H. Lehrach. 1993. Algorithms and software tools for ordering clone libraries: Application to the mapping of the genome of Schizosaccharomyces pombe. Nucleic Acids Res. 21: 1965-1974.
31. Nelson, D.L., S.A. Ledbetter, L. Corbo, M.F. Victoria, R. Ramirezsolis, T.D. Webster, D.H. Ledbetter, and C.T. Caskey. 1989. Alu polymerase chain-reaction - A method for rapid isolation of human-specific sequences from complex DNA sources. Proc. Natl. Acad. Sci. 86: 6686-6690.
32. Pinkel, D., J. Landegent, C. Collins, J. Fuscoe, R. Segraves, J. Lucas, and J. Gray. 1988. Fluorescence in situ hybridization with human chromosome-specific libraries - Detection of trisomy 21 and translocations of chromosome 4. Proc. Natl. Acad. Sci. 85: 9138-9142.
33. Riley, J., R. Butler, D. Ogilvie, R. Finniear, D. Jenner, S. Powell, R. Anand, J.C. Smith, and A.F. Markham. 1990. A novel, rapid method for the isolation of terminal sequences from yeast artificial chromosome (YAC) clones. Nucleic Acids Res. 18: 2887-2890.
34. Ried, K., A. Mertz, R. Nagaraja, M. Trusgnich, J.H. Riley, R. Anand, H. Lehrach, D. Page, J.W. Ellison, and G. Rappold. 1995. Characterisation of a YAC contig spanning the pseudoautosomal region. Genomics 29: 787-792.
35. Rogner, U.C., P. Kioschis, K. Wilke, W. Gong, E. Pick, A. Dietrich, U. Zechner, H. Hameister, A. Pragliola, G.E. Herman, et al. 1994. A YAC clone map spanning 7.5 megabases of human chromosome based Xq28. Hum. Mol. Genet. 3: 2137-2146.
36. Ross, M., J.D. Hoeisel, A.P. Monaco, Z. Larin, G. Zehetner, and H. Lehrach. 1992. High-density gridded YAC filters: Their potential as genome mapping tools. In Techniques for the analysis of complex genomes. (ed. R. Anand), pp. 137-154. Academic Press, London, UK.
37. Sulston, J., F. Mallett, R. Staden, R. Durbin, T. Horsnell, and A. Coulson. 1988. Software for genome mapping by fingerprinting techniques. Comput. Appl. Biosci. 4: 125-132.
38. Wexler, N.S., A.B. Young, R.E. Tanzi, H. Travers, S. Starosta-Rubenstein, J.B. Penney, S.R. Snodgrass, I. Shoulson, F. Gomez, M.A. Ramos-Arroyo, G. Penchaszadeh, R. Moreno, K. Gibbons, A. Farinyarz, W. Hobbs, M.A. Anderson, E. Bonilla, P.M. Conneally, and J.F. Gusella. 1987. Homozygotes for Huntington's disease. Nature 326: 194-197.
39. Wieacker, P., K.E. Davies, H.J. Cooke, P.L. Pearson, S.S. Bhattacharya, J. Zimmer, and H.H. Ropers. 1984. Towards a complete linkage map of the human X chromosome: Regional assignments of 16 cloned single copy DNA sequences employing a panel of somatic cell hybrids. Am. J. Hum. Genet. 36: 265-276.
40. Zehetner, G. and H. Lehrach. 1994. The Reference Library System - Sharing biological material and experimental data. Nature 367: 489-491.
41. Zucchi, I., S. Mumm, G. Pilia, S. MacMillan, R. Reinbold, L. Susani, J. Weissenbach, and D. Schlessinger. 1996. YAC/STS Map across 12 Mb of Xq27 and 25 kb resolution, merging Xq26-qter. Genomics 34: 42-54.