Phylogenetic relationships of Chinese antelopes (subfamily Antilopinae) based on mitochondrial ribosomal RNA gene sequences

Journal of Zoology

Volumn 261, Issue 3, 2003, Pages 227-237

  Lei, Runhua ^a   Jiang, Zhigang ^a   Hu, Zhiang ^b   Yang, Wenlong ^b  

^a INSTITUTE OF ZOOLOGY   (China)

^b INSTITUTE OF BOTANY   (China)

Author keywords

Antelopini; Gazella; Procapra; Ribosomal RNA gene

Indexed keywords

PHYLOGENY; RNA; UNGULATE;

ANTILOPINAE; BOVIDAE; GAZELLA; GAZELLA SUBGUTTUROSA; HEMITRAGUS; HEMITRAGUS JEMLAHICUS; MAMMALIA; PANTHOLOPS; PANTHOLOPS HODGSONI; PROCAPRA; PROCAPRA GUTTUROSA; PROCAPRA PICTICAUDATA; PROCAPRA PRZEWALSKII; SAIGA; SAIGA TATARICA; UNGULATA;

EID: 0345393812     PISSN: 09528369     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0952836903004163     Document Type: Article

References (56)

1. Allard, M. W., Miyamoto, M. M., Jarecki, L., Kraus, F. & Tennant, M. R. (1992). DNA systematics and evolution of the artiodactyla family Bovidae. Proc. Natl Acad. Sci. U.S.A. 89(9): 3972-3976.
2. Allen, G. (1940). Natural history of central Asia 2. The mammals of China and Mongolia. New York: American Museum of Natural History.
3. Bannikov, A., Zhirov, L., Lebedeva, L. & Fandeev, A. (1967). Biology of the Saiga. Jerusalem: Israel Program for Scientific Translations.
4. Douzery, E. & Catzeflis, F. M. (1995). Molecular evolution of the mitochondrial 12S rRNA in ungulate (Mammalia). J. mol. Evol. 41: 622-636.
5. Farris, J. S., Kallersjo, M., Kluge, A. G. & Bult, C. (1994). Testing significance of incongruence. Cladistics 10: 315-319.
6. Fitch, W. M. & Atchley, W. R. (1987). Divergences in inbred strains of mice: a comparison of three different types of data. In Molecular and morphology in evolution: conflict or compromise?: 203-216. Patterson, C. (Ed.). Cambridge: Cambridge University Press.
7. Gatesy, J., Amato, G., Vrba, E., Schaller, G. & DeSalle, R. (1997). A cladistic analysis of mitochondrial ribosomal DNA from the Bovidae. Mol. Phylogenet. Evol. 7(3): 303-319.
8. Gatesy, J., Yelon, D., DeSalle, R. & Vrba, E. (1992). Phylogeny of the Bovidae (Artiodactyla, Mammalia) based on mitochondrial ribosomal DNA sequences. Mol. Biol. Evol. 9: 433-466.
9. Gentry, A. (1992). The subfamilies and tribes of the family Bovidae. Mammal Rev. 22: 1-32.
10. Georgiadis, N. J., Kat, P. W., Oketch, H. & Patton, J. (1990). Allozyme divergence within the Bovidae. Evolution 44(8): 2135-2149.
11. Groves, C. (1967). On the gazelles of the genus Procapra Hodgson, 1846. Z. Saugetierkd. 32: 144-149.
12. Groves, P. & Shields, G. (1996). Phylogenetics of the Caprinae based on cytochrome b sequence. Mol. Phylogenet. Evol. 5: 467-476.
13. Hassanin, A. & Douzery, E. J. P. (1999a). The tribal radiation of the family Bovidae (Artiodactyla) and the evolution of the mitochodrial cytochrome b gene. Mol. Phylogent. Evol. 12: 227-243.
14. Hassanin, A. & Douzery, E. J. (1999b). Evolutionary affinities of the enigmatic saola (Pseudoryx nghetinhensis) in the context of the molecular phylogeny of Bovidae. Proc. R. Soc. Lond. B Biol. Sci. 266(1422): 893-900.
15. Hiendleder, S., Mainz, K., Plante, Y. & Lewalski, H. (1998). Analysis of mitochondrial DNA indicates that domestic sheep are derived from two different ancestral maternal sources: no evidence for contributions from urial and argali sheep. J. Hered. 89(2): 113-120.
16. Hillis, D. M. & Huelsenbeck, J. P. (1992). Signal, noise and reliability in molecular phylogenetic analysis. J. Hered. 83: 189-195.
17. Jiang, Z., Feng, Z., Wang, Z., Chen, L., Cai, P. & Li, Y. (1995). Historical and current distributions of Przewalski's gazelles. Acta Theriol. Sin. 15: 241-251. (In Chinese, with a summary in English.)
18. Jiang, Z. & Li, D. (1998). Antelopes of China. Biol. Bull. Russian Acad. Sci. 25: 458-461.
19. Jiang, Z., Li, D. & Wang, Z. (2000). Population declines of Przewalski's gazelle around Qinghai, China. Oryx 34: 129-135.
20. Jiang, Z., Li, D., Wang, Z., Zhu, S. & Wei, W. (2001). Population structure of the Przewalski's gazelle around the Qinghai Lake, China. Acta Zool. Sin. 47: 158-162. (In Chinese, with a summary in English.)
21. Jiang, Z. & Wang, S. (2001). China. In IUCN antelope survey and action plan part 4. Country report on antelope for IUCN/SSC. Mallon, D. P. & Kingwood, S. C. (Eds). Gland, Switzerland: IUCN.
22. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. mol. Evol. 16: 111-120.
23. Kleinschmidt, A. (1961). Uber die große mongolishe Kropfgazelle (Procapra gutturosa, Pallas 1777). Stuttg. Beitr. Naturkd. 79: 1-24.
24. Kocher, T., Thomas, W. K., Meyer, A., Edwards, S. V., Pääbo, S. & Villabianca, F. X. (1989). Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc. Natl Acad. Sci. U.S.A. 86: 6196-6200.
25. Kraus, F. & Miyamoto, M. M. (1990). Rapid cladogenesis among the pecoran ruminants: evidence from mitochondrial DNA sequences. Syst. Zool. 40: 117-130.
26. Kumar, S., Tamura, K. & Nei, M. (1993). MEGA: molecular evolutionary genetics analysis, version 1.01. University Park, PA: Pennsylvania State University Press.
27. Kuwayama, R. & Ozawa, T. (2000). Phylogenetic relationships among European red deer, wapiti, and sika deer inferred from mitochondrial DNA sequences. Mol. Phylogenet. Evol. 15: 115-123.
28. Ledje, C. & Arnason, U. (1996). Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene. J. Mol. Evol. 43: 641-649.
29. Lister, A. M. (1989). Rapid dwarfing of red deer on Jersey in the Last Interglacial. Nature (Lond.) 342: 539-543.
30. Mallon D. P. & Kingwood, S. C. (2001). IUCN antelope survey and action plan part 4. Country Report on Antelope for IUCN/SSC. Gland, Switzerland: IUCN.
31. Martin, A. (1995). Metabolic rate and directional nucleotide substitution in animal mitochondrial DNA. Mol. Biol. Evol. 12: 1124-1131.
32. Matthee, C. A. & Davis, S. K. (2001). Molecular insights into the evolution of the family Bovidae: a nuclear DNA perspective. Mol. Biol. Evol. 18(7): 1220-1230.
33. Matthee, C. A. & Robinson, T. J. (1999). Cytochrome b phylogeny of the family Bovidae: resolution within the Alcelaphini, Antilopini, Neotragini and Tragelaphini. Mol. Phylogenet. Evol. 12: 31-46.
34. Meyer, A. (1994). Shortcomings of the cytochrome b gene as a molecular marker. Trends Ecol. Evol. 9: 278-280.
35. Miyamoto, M. M., Kraus, F. & Ryder, O. A. (1990). Phylogeny and evolution of antlered deer determined from mitochondrial DNA sequences. Proc. Natl Acad. Sci. U.S.A. 87: 6127-6131.
36. Nowak, R. M. (1999). Order Artiodactyla. In Walker's mammal's of the world, 6th edn: 1051-1238. Baltimore: The Johns Hopkins University Press.
37. Patterson, C. P. (1987). Introduction. In Molecular and morphology in evolution: conflict or compromise?: 1-22. Patterson, C. (Ed.). Cambridge: Cambridge University Press.
38. Patterson, C. P., Williams, D. M. & Humphries, C. J. (1993). Congruence between molecular and morphological phylogenies. Annu. Rev. Ecol. Syst. 24: 153-188.
39. Pocock, R. (1918). On some external characters of ruminant Artiodactyla, part II. Annu. Mag. nat. Hist. 9(2): 125-144.
40. Rebholz, W. & Harley, E. (1999). Phylogenetic relationships in the bovid subfamily Antilopinae based on mitochondrial DNA sequences. Mol. Phylogent. Evol. 12: 87-94.
41. Robinson, T. J., Harrison, W. R., Ponce De Leon, F. A., Davis, S. K. & Elder, F. F. B. (1998). A molecular cytogenetic analysis of X chromosome repatterning in the Bovidae: transpositions, inversions, and phylogenetic inference. Cytogenet. Cell. Genet. 80: 179-184.
42. Saitou, N. & Nei, M. (1987). The neighbour-joining method: a new method for constructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
43. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular cloning. New York: Cold Spring Harbor Laboratory.
44. Schaller, G. (1977). Mountain monarchs: wild sheep and Tibetan gazelles of the Himalayas. Chicago: University of Chicago Press.
45. Schaller, G. (1998). Wildlife of the Tibetan steppe. Chicago: University of Chicago Press.
46. Siddall, M. (1996). Random cladistics, version 4.0. Gloucester Point, VA: Virginia Institute of Marine Science.
47. Simpson, G. (1945). The principles of classification and a classification of mammals. Bull. Am. Mus. nat. Hist. 85: 1-350.
48. Sokolov, I. I. (1959). Kopytnye (Orders Perissodactyla and Artiodactyla) Fauny SSSR. [Ungulates (Orders Perissodactyla and Artiodactyla) in the USSSR Fauna.] Moscow-Leningrad: Nauka.
49. Swofford, D. L. (1993). PAUP: phylogenetic analysis using parsimony, version 3.1.1. Champaign, IL: Illinois Natural History Survey.
50. Thomas, H. (1994). Anatomie cranienne et relations phylogenetiques du nouveau bovide (Pseudoryx nghetinhensis). Decouvert dans la cordillere annamitique au Vietnam Mammalia 58(3): 453-481.
51. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
52. von Roy, E. (1958). Einigie Bemerkungen zur Systematik der Paarhufer. Säugetierkd. Mitt. 6: 150-153.
53. Vrba, E. & Schaller, G. (2000). Antelopes, deer, and relatives; fossil record, behavior ecology, systematics, and conservation. Vrba, E. & Schaller, G. (Eds). New Haven, CT: Yale University Press.
54. Vrba, E. (1985). African Bovidae: evolutionary events since the Miocene. S. Afr. J. Sci. 81: 263-266.
55. Wang, H. Y., Tsai, M. P., Tu, M. C. & Lee, S. C. (2000). Universal primers for amplification of the complete mitochondrial 12S rRNA gene in vertebrate. Zool. Stud. 39(1): 61-66.
56. Wang, X. & Schaller, G. (1996). Status of large mammals in western Inner Mongolia, China. J. East China Normal Univ. Nat. Sci. Spec. Issue Zool. No. 4, December: 93-104.