Crystal Structure of an Archaeal Class I Aldolase and the Evolution of (βα)8 Barrel Proteins

Journal of Biological Chemistry

Volumn 278, Issue 47, 2003, Pages 47253-47260

  Lorentzen, Esben ^a   Pohl, Ehmke ^a   Zwart, Peter ^a   Stark, Alexander ^b   Russell, Robert B ^b   Knura, Thomas ^c   Hensel, Reinhard ^c   Siebers, Bettina ^c  

^a EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^b EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^c UNIVERSITY OF DUISBURG ESSEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CATALYST ACTIVITY; CHEMICAL BONDS; CRYSTAL SYMMETRY; ENZYME KINETICS; FRUCTOSE; PHOSPHATES; PROTEINS;

GLYCOLYSIS;

BIOCHEMISTRY;

FRUCTOSE BISPHOSPHATE ALDOLASE;

ARTICLE; CONTROLLED STUDY; COVALENT BOND; CRYSTAL STRUCTURE; CRYSTALLIZATION; DISPERSION; GENE SEQUENCE; NONHUMAN; PRIORITY JOURNAL; PROTEIN STRUCTURE; SPECTRAL SENSITIVITY; THERMOPROTEUS TENAX;

ARCHAEAL PROTEINS; BINDING SITES; CRYSTALLOGRAPHY, X-RAY; DIHYDROXYACETONE PHOSPHATE; EVOLUTION, MOLECULAR; FRUCTOSE-BISPHOSPHATE ALDOLASE; MOLECULAR STRUCTURE; PROTEIN CONFORMATION; PROTEIN SUBUNITS; THERMOPROTEACEAE;

ARCHAEA; THERMOPROTEUS; THERMOPROTEUS TENAX;

EID: 0345306573     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M305922200     Document Type: Article

References (49)

1. Lebherz, H. G., and Rutter, W. J. (1969) Biochemistry 8, 109-121
2. Thomson, G. J., Howlett, G. J., Ashcroft, A. E., and Berry, A. (1998) Biochem. J. 331, 437-445
3. Copley, R. R., and Bork, P. (2000) J. Mol. Biol. 303, 627-641
4. Nagano, N., Orengo, C. A., and Thornton, J. M. (2002) J. Mol. Biol. 321, 741-765
5. Siebers, B., Brinkmann, H., Dorr, C., Tjaden, B., Lilie, H., van der Oost, J., and Verhees, C. H. (2001) J. Biol. Chem. 276, 28710-28718
6. Galperin, M. Y., Aravind, L., and Koonin, E. V. (2000) FEMS Microbiol. Lett. 183, 259-264
7. Gamblin, S. J., Cooper, B., Millar, J. R., Davies, G. J., Littlechild, J. A., and Watson, H. C. (1990) FEBS Lett. 262, 282-286
8. Choi, K. H., Shi, J., Hopkins, C. E., Tolan, D. R., and Allen, K. N. (2001) Biochemistry 40, 13868-13875
9. Doublie, S. (1997) Methods Enzymol. 276, 523-530
10. Bradford, M. M. (1976) Anal. Biochem. 72, 248-254
11. Teng, T. Y. (1990) J. Appl. Crystallogr. 23, 387-391
12. Pohl, E., Gonzalez, A., Hermes, C., and van Silfhout, R. G. (2001) J. Synchrotron Radiat. 8, 1113-1120
13. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
14. Sheldrick, G. M. (1998) in Direct Methods for Solving Macromolecular Structures (Fortier, S., ed) pp. 401-411, Kluwer Academic Publishers, Dordrecht
15. Collaborative Computational Project, N. (1994) Acta Crystallogr. Sect. D Biol. Crystallogr. 50, 760-763
16. Terwilliger, T. C. (2000) Acta Crystallogr. Sect. D Biol. Crystallogr. 56, 965-972
17. Perrakis, A., Morris, R., and Lamzin, V. S. (1999) Nat. Struct. Biol. 6, 458-463
18. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. Sect. A 47, 110-119
19. Winn, M. D., Isupov, M. N., and Murshudov, G. N. (2001) Acta Crystallogr. Sect. D Biol. Crystallogr. 57, 122-133
20. Murshudov, G. N., Vagin, A. A., and Dodson E. J. (1997)Acta Crystallogr. Sect. D Biol. Crystallogr. 53, 240-255
21. Navaza, J. (1994) Acta Crystallogr. Sect. A 50, 157-163
22. Russell, R. B., and Barton, G. J. (1992) Proteins 14, 309-323
23. Stark, A., Sunyaev, S., and Russell, R. B. (2003) J. Mol. Biol. 326, 1307-1316
24. Kraulis, P. (1991) J. Appl. Crystallogr. 24, 946-950
25. Merritt, E. A., and Murphy, M. E. P. (1994) Acta Crystallogr. Sect. D Biol. Crystallogr. 50, 869-873
26. Esnouf, R. M. (1997) J. Mol. Graph. 15, 132-134
27. Barton, G. J. (1993) Protein Eng. 6, 37-40
28. Brunger, A. T. (1992) Nature 355, 472-475
29. Ramachandran, G. N., and Sasisekharan, V. (1968) Adv. Protein. Chem. 23, 283-438
30. Jones, S., and Thornton, J. M. (1995) Prog. Biophys. Mol. Biol. 63, 31-65
31. Puchkaev, A. V., Koo, L. S., and Ortiz de Montellano, P. R. (2003) Arch. Biochem. Biophys. 409, 52-58
32. Farber, G. K., and Petsko, G. A. (1990) Trends Biochem. Sci. 15, 228-234
33. Dalby, A., Dauter, Z., and Littlechild, J. A. (1999) Protein Sci. 8, 291-297
34. Mavridis, I. M., Hatada, M. H., Tulinsky, A., and Lebioda, L. (1982) J. Mol. Biol. 162, 419-444
35. Lo Conte, L., Brenner, S. E., Hubbard, T. J., Chothia, C., and Murzin, A. G. (2002) Nucleic Acids Res. 30, 264-267
36. Wilmanns, M., Hyde, C. C., Davies, D. R., Kirschner, K., and Jansonius, J. N. (1991) Biochemistry 30, 9161-9169
37. Morris, A. J., and Tolan, D. R. (1993) J. Biol. Chem. 268, 1095-1100
38. Thorell, S., Schurmann, M., Sprenger, G. A., and Schneider, G. (2002) J. Mol. Biol. 319, 161-171
39. Jia, J., Huang, W., Schorken, U., Sahm, H., Sprenger, G. A., Lindqvist, Y., and Schneider, G. (1996) Structure 4, 715-724
40. Lindqvist, Y., and Schneider, G. (1997) Curr. Opin. Struct. Biol. 7, 422-427
41. Banner, D. W., Bloomer, A. C., Petsko, G. A., Phillips, D. C., Pogson, C. I., Wilson, I. A., Corran, P. H., Furth, A. J., Milman, J. D., Offord, R. E., Priddle, J. D., and Waley, S. G. (1975) Nature 255, 609-614
42. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N., and Bourne, P. E. (2000) Nucleic Acids Res. 28, 235-242
43. Walden, H., Bell, G. S., Russell, R. J., Siebers, B., Hensel, R., and Taylor, G. L. (2001) J. Mol. Biol. 306, 745-757
44. Murzin, A. (1993) J. Mol. Biol. 230, 689-694
45. Mande, S. C., Mainfroid, V., Kalk, K. H., Goraj, K., Martial, J. A., and Hol, W. G. (1994) Protein Sci. 3, 810-821
46. Lazcano, A., and Miller, S. L. (1999) J. Mol. Evol. 49, 424-431
47. Woese, C. R. (1987) Microbiol. Rev. 51, 221-271
48. Kollman, J. M., and Doolittle, R. F. (2000) J. Mol. Evol. 51, 173-181
49. Pace, N. R. (1991) Cell 65, 531-533