Simple deterministic identity-by-descent coefficients and estimation of QTL allelic effects in full and half sibs

Genetical Research

Volumn 80, Issue 3, 2002, Pages 237-243

  Nagamine, Y ^a   Knott, S A ^b   Visscher, P M ^b   Haley, C S ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b UNIVERSITY OF EDINBURGH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; ANALYSIS OF VARIANCE; ANALYTIC METHOD; CONTROLLED STUDY; CORRELATION ANALYSIS; DATA ANALYSIS; GENE LOCUS; GENETIC ANALYSIS; GENETIC MARKER; GENETIC SELECTION; GENETIC VARIABILITY; GENOTYPE; HERITABILITY; MATHEMATICAL COMPUTING; MONTE CARLO METHOD; NONHUMAN; OUTBRED STRAIN; POPULATION GENETICS; PROBABILITY; QUANTITATIVE TRAIT LOCUS; REVIEW; SIBLING; SIMULATION; STATISTICAL ANALYSIS; SWINE;

ANIMALS; DATA INTERPRETATION, STATISTICAL; GENOTYPE; LEAST-SQUARES ANALYSIS; QUANTITATIVE TRAIT LOCI; SWINE;

SUS SCROFA;

EID: 0345270031     PISSN: 00166723     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0016672302005918     Document Type: Review

References (20)

1. Almasy, L. & Blangero, J. (1998). Multipoint quantitative-traits linkage analysis in general pedigrees. American Journal of Human Genetics 62, 1198-1211.
2. Andersson, L., Haley, C. S., Ellegren, H., Knott, S. A., Johansson, M., Andersson, K., Andersson-Eklund, L., Edfors-Lilja, I., Fredholm, M., Hansson, I., Hakansson, J. & Lundström, K. (1994). Genetic mapping of quantitative trait loci for growth and fatness in pigs. Science 263, 1771-1774.
3. de Koning, D. J., Janss, L. L. G., Rattink, A. P., van Oers, P. A. M., de Vries, B. J., Groenen, M. A. M., van der Poel, J. J., de Groot, P. N., Brascamp, E. W. & van Arendonk, J. A. M. (1999). Detection of quantitative trait loci for backfat thickness and intramuscular fat content in pigs. Genetics 152, 1679-1690.
4. Fernando, R. L. & Grossman, M. (1989). Marker assisted selection using best linear unbiased prediction. Genetics Selection Evolution 21, 467-477.
5. George, A. W., Visscher, P. M. & Haley, C. S. (2000). Mapping quantitative trait loci in complex pedigrees. Genetics 156, 2081-2092.
6. Gilmour, A. R., Cullis, B. R., Welham, S. J. & Thompson, R. (1999). ASREML Program User Manual. New South Wales: Orange Agricultural Institute.
7. Green, P., Falls, K. & Crooks, S. (1990). Documentation for CRI-MAP (version 2.4). St Louis: Washington University School of Medicine.
8. Grignola, F. E., Hoeschele, I. & Tier, B. (1996a). Mapping quantitative trait loci in outcross populations via residual maximum likelihood. I. Methodology. Genetics Selection Evolution 28, 479-490.
9. Grignola, F. E., Hoeschele, I., Zhang, Q. & Thaller, G. (1996b). Mapping quantitative trait loci in outcross populations via residual maximum likelihood. II. A simulation study. Genetics Selection Evolution 28, 491-504.
10. Haldane, J. B. S. (1919). The combination of linkage values, and the calculation of distances between the loci of linked factors. Journal of Genetics 8, 299-309.
11. Heath, S. C. (1997). Markov chain Monte Carlo segregation and linkage analysis for oligogenic models. American Journal of Human Genetics 61, 748-760.
12. Henderson, C. R. (1984). Applications of linear models in animal breeding. Guelph: University of Guelph Press.
13. Hoeschele, I., Uimari, P., Grignola, F. E., Zhang, Q. & Gage, K. M. (1997). Advances in statistical methods to map quantitative trait in outbred populations. Genetics 147, 1445-1457.
14. Jansen, C. S. & Sheehan, H. (1998). Problems with determination of noncommunicating classes for Monte Carlo Markov chain applications in pedigree analysis. Biometrics 54, 416-425.
15. Knott, S. A., Elsen, J. M. & Haley, C. S. (1996). Methods for multiple-marker mapping of quantitative trait loci in half-sib populations. Theoretical and Applied Genetics 93, 71-80.
16. Knott, S. A., Marklund, L., Haley, C. S., Anderson, K., Davies, W., Ellegren, H., Fredholm, M., Hansson, I., Hoyheim, B., Lundstrom, K., Moller, M. & Anderson, L. (1998). Multiple marker mapping of quantitative trait loci in a cross between outbred wild boar and Large White pigs. Genetics 149, 1069-1080.
17. Van Arendonk, J. A. M., Tier, B. & Kinghorn, B. P. (1994). Use of multiple genetic markers in prediction of breeding values. Genetics 137, 319-329.
18. Visscher, P. M., Thompsom, R. & Haley, C. S. (1996). Confidence intervals in QTL mapping by bootstrapping. Genetics 143, 1013-1020.
19. Visscher, P. M., Haley, C. S., Heath, S. C., Muir, W. J. & Blackwood, D. H. R. (1999). Detecting QTLs for uni and bipolar disorder using a variance component method. Psychiatric Genetics 9, 75-84.
20. Xu, S. & Atchley, W. R. (1995). A random model approach to interval mapping of quantitative trait loci. Genetics 141, 1189-1197.