Characterizing biostructures and cellular events in 2D/3D: Using wide-field and confocal optical sectioning microscopy

IEEE Engineering in Medicine and Biology Magazine

Volumn 15, Issue 1, 1996, Pages 92-100

  Diaspro, Alberto ^a,b,c,d,e,f   Beltrame, Francesco ^b,c   Fato, Marco ^b,c,g   Ramoino, Paola ^c  

^a INFM and Department of Physics   (Italy)

^b Department of Communications Computer and Systems Science (DIST)   (Italy)

^c UNIVERSITY OF GENOA   (Italy)

^d UNIVERSITY OF GENOA   (Italy)

^e DREXEL UNIVERSITY   (United States)

^f UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

^g STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; APPROXIMATION THEORY; BIOLOGY; CELLS; COMPUTER SIMULATION; DATA ACQUISITION; DIGITAL FILTERS; IMAGE RECONSTRUCTION; MEDICAL APPLICATIONS; OPTICAL TRANSFER FUNCTION; THREE DIMENSIONAL;

CELLULAR STRUCTURE; CHROMATIN; CONFOCAL SCANNING LASER MICROSCOPY; DECONVOLUTION; POINT SPREAD FUNCTION; TWO DIMENSIONAL; WIDE FIELD OPTICAL SECTIONING MICROSCOPY;

OPTICAL MICROSCOPY;

CONFOCAL LASER MICROSCOPY; DIGITAL FILTERING; FLUORESCENCE MICROSCOPY; IMAGE PROCESSING; IMAGING; MICROSCOPY; NONHUMAN; PHASE CONTRAST MICROSCOPY; REVIEW;

EID: 0345226618     PISSN: 07395175     EISSN: None     Source Type: Journal    
DOI: 10.1109/51.482848     Document Type: Article

References (37)

1. Wilson T, Cogswell CJ: "Three-Dimensional Microscopy: Image Aquisition and Processing II", Proc. SPIE, vol.2412, 1995.
2. Gualtieri P: Molecular biology in living cells by means of digital optical microscopy, Micron and Microscopica Acta, 23(3), 239-257, 1992.
3. Gunawardena S, Heddle E, Rykowski MC: 'Chromosomal puffing' in diploid nuclei of Drosophila melanogaster, J.Cell.Sci., 108 (5), 1863-1872, 1995
4. Arndt-Jovin DJ, Nicoud KM, Kaufamann J, Jovin TM: Fluorescence digital-imaging microscopy in cell biology, Science, 230, 247-256, 1985.
5. Ried T, Baldini A, Rand TC, Ward DC: Simultaneous visualization of seven different DNA probes by in situ hybridization using combinatorial fluorescence and digital imaging microscopy. Proc.Natl.Acad.Sci. USA, 89, 1388-1392, 1992.
6. Carter KC, Bowman D, Carrington W, Fogarty K, Mc Neil JA, Fay FS, Lawrence JB: A Three-Dimensional View of Precursor Messenger RNA Metabolism Within the Mammalian Nucleus, Science, 259, 1330-1335, 1993.
7. Wilson T, Sheppard CJR: Theory and Practice of Scanning Optical Microscopy, Academic Press, London, 1984.
8. Minsky M: Memoir of Inventing the Confocal Scanning Microscope, Scanning, 10,-128-138, 1988 (this work can be also found in ftp.ai.mit.edu in the file pub/minsky/confocal.microscope)
9. Weinstein M, Castleman KR: Reconstructing 3D Specimens from 2D Section Images, Proc. SPIE, 26, 131-138, 1971.
10. Agard DA: Optical Sectioning Microscopy, Ann. Rev. Biophys. Bioeng., 13, 191-219, 1984.
11. Beltrame F, Diaspro A, Fato M, Martin I, Ramoino P, Sobel I: in "Three-Dimensional Microscopy: Image Aquisition and Processing II" (T. Wilson and C.J. Cogswell, eds.), Proc. SPIE, vol.2412, p.222-229, 1995.
12. van der Voort HTM, Messerli JM, Noordmans HJ, Smeulders AWM: Volume visualization for interactive microscopic image analysis, Bioimaging, 1(1), 20-29, 1993.
13. Castleman KR: Digital Image Processing, Prentice Hall, Englewood Cliffs, NI, 1996.
14. Bianco B, Diaspro A: Analysis of Three-Dimensional Cell Imaging Obtained with Optical Microscopy Techniques Based on Defocusing, Cell Biophys., 15, 189-199, 1989.
15. Diaspro A, et al.: 3D representation of biostructures imaged with an optical microscope. Part A, B, Image and Vision Computing, 8(2), 130-141, 1990
16. Kawata S, Minami S: The principle and applications of optical microscope tomography, Acta Histochem.Cytochem., 19(1), 73-81, 1986.
17. Willis B, Turner JN, Collins DN, Roysam B, Holmes TJ: Developments in-Three-dimensional Stereo Brightfield Microscopy, Microscopy Research and Technique, 24, 437-451, 1993.
18. Preza C, Miller MI, Thomas LJ Jr, McNally JG: Regularized linear method for reconstruction of three-dimensional microscopic objects from optical sections, J.Opt.Soc.Am., 9 (2), 219-228, 1992.
19. Wilson T, Tan JB: Three-dimensional image reconstruction in conventional and confocal microscopy. Bioimaging, 1, 176-184, 1993.
20. Cox G, Sheppard C: Effects of image deconvolution on optical sectioning in conventional and confocal microscopy, Bioimaging, 1, 82-95, 1993.
21. Wilson T: Optical sectioning in confocal fluorescent microscopes, J.Microscopy (OXF), 154, 143-156, 1989.
22. Frisken Gibson S, Lanni F: Measured analytical PSFs of the optical microscope for use in 3D optical serial sectioning microscopy, in Optical Microscopy for Biology, 109-118, Wiley- Liss Inc., 1990.
23. Stokseth PA: Properties of a Defocused Optical System, J.Opt.Soc.Am., 59(10), 1314-1321, 1969.
24. Hiraoka Y, Sedat JW, Agard DA: The use of a charge-coupled device for quantitative optical microscopy of biological structures, Science,m 238, 36-41, 1987.
25. Shaw PJ, Rawlins DJ: The point spread function of a confocal microscope: its measurement and use in deconvolution of 3D data, J.Microsc. (OXF), 163, 151-165, 1991.
26. Diaspro A., et al.: IMAGO: a complete system for acquisition, processing, two/three-dimensional and temporal display of microscopic bio-images, Comp.Meth. and Progr. in Biomed., 31, 255-236, 1990.
27. Wu K, Gauthier D, Levine MD: Live Cell Image Segmentation, IEEE Trans. on Biomedical Engineering, TBE-42 (1), 1-12, 1995.
28. Kak AC, Slaney M: Principles of Computerized Tomographic Imaging, IEEE Press, New York, 1988.
29. Tommasi T, Diaspro A, Bianco B: 3D reconstruction in optical microscopy by a frequency-domain approach, Signal Processing, 32, 281-292, 1993.
30. Rangayyan R, Dhawan AP, Gordon R: Algorithms for limited view computed tomography: an annotated bibliography and a challenge., Applied Optics, 24 (23), 4000-4012, 1985.
31. Bianco B, Tommasi T, Oneto A, Murino V, Diaspro A: A frequency domain analysis of 3D reconstrtuction techniques based on defocusing. Int. J. of Modeling and Simulation, vol.16, 1996.
32. Diaspro A, Zunino R, Parodi GC: A performance analysis of an associative system for image classification, Patt.Rec.Letters, 14, 861-868, 1993.
33. Beltrame F, Ramoino P, Fato M, Delmonte Corrado MU, Marcenaro G, Crippa Franceschi T: Three-dimensional reconstruction of Paramecium Priamurelia oral apparatus through confocal laser scanning optical microscopy, Micron and Microscopica Acta, 23 (4), 403-412, 1992.
34. Beltrame F, D'Anna F, Franzi AT, Marcenaro G: 3D Reconstruction of Neuronal Structures through Confocal Laser Scanning Optical Microscopy, Innov.Tech.Biol.Med., vol.13 (3), 358-371, 1992.
35. Ramoino P, Beltrame F, Diaspro A, Fato M: A time variant analysis of organelle and vescicle movement during phagocytosis in Paramecium primaurelia by means of fluorescence CLSM, submitted, 1995.
36. Diaspro A: Image processing by means of thin films in wide-field optical sectioning microscopy., Ann.Biomed.Eng. 22(suppl.I). p.83, 1994.
37. Hampp N, Zeisel D: Mutated bacteriorhodopsin. Versatile media in Optical Image Processing. IEEE Eng.Med.Biol., 13(1), 67-74, 1994.