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In our application example, however, no conformational energy term was needed because the studied compounds do not have rotatable bonds.
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41
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0345472099
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Otherwise, for a small number of C, no linearization would be necessary and nonlinear regression analysis could be adopted using directly eq 4.
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Transformation of the aryl hydrocarbon receptor to a DNA-binding form is accompanied by release of the 90 kDa heat-shock protein and increased affinity for 2,3,7,8-tetrachlorodibenzo-p-dioxin
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0345040842
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note
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The number of included variables or the number of compounds in the set, whichever is smaller.
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51
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0345040841
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note
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The leave-one-out q values for the training set are not used to assess predictive abilities of the models. Predictions for the test set that did not come into contact with calibration are used for this purpose.
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0345040839
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note
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ijk values that substantially differ from the rest (tested as a difference between mean and median values).
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53
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0344178205
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note
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Due to the duration of the optimization procedure, predictive ability was examined using a single test set, rather than a series of smaller test sets.
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55
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0345040840
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note
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Since all ligands are planar and aligned in the skeleton plane in all modes, the resulting fields exhibit symmetry about this plane. The analyzed ligand clusters are symmetrical about the y-axis (two modes) and both x- and y-axes (four and, partially, 16 modes). Consequently, the multimode procedure produces equivalent maps, two and four for the two-mode and the four-mode/16-mode approaches, respectively, all rotated by 180° about the corresponding symmetry axes. Each multimode approach arrives at one of the maps depending upon the initial estimates and other details in the optimization procedure.
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