Organization of the DMSO Respiratory Operon of Rhodobactercapsulatus and Its Consequences for Homologous Expression of DMSOR/TMAOR

Biological Chemistry

Volumn 378, Issue 3-4, 1997, Pages 303-308

  Knäblein, Jörg ^a   Dobbek, Holger ^a   Schneider, Frank ^a  

^a MAX PLANCK INSTITUTE OF BIOCHEMISTRY   (Germany)

Author keywords

Cloning; Dimethyl sulfoxide reductase; Homologous expression; Respiratory operon; Rhodobacter capsulatus; Trimethylamine N oxide reductase

Indexed keywords

BACTERIAL ENZYME; OXIDOREDUCTASE;

ARTICLE; BACTERIAL GENETICS; ESCHERICHIA COLI; MOLECULAR CLONING; NONHUMAN; OPERON; PRIORITY JOURNAL; RHODOBACTER CAPSULATUS;

AMINO ACID SEQUENCE; CHROMOSOME MAPPING; CHROMOSOMES, BACTERIAL; CLONING, MOLECULAR; DIMETHYL SULFOXIDE; GENES, BACTERIAL; IRON-SULFUR PROTEINS; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; NADH, NADPH OXIDOREDUCTASES; OPERON; OXIDOREDUCTASES; OXIDOREDUCTASES ACTING ON CH-NH GROUP DONORS; POLYMERASE CHAIN REACTION; RHODOBACTER CAPSULATUS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; PHOTOBACTERIA; RHODOBACTER CAPSULATUS; RHODOPSEUDOMONAS;

EID: 0345070011     PISSN: 14316730     EISSN: 14374315     Source Type: Journal    
DOI: 10.1515/bchm.1997.378.3-4.303     Document Type: Article

References (31)

1. Ausubel, F.M., Brent, R., Kingston, R.E. Moore, D.D., Seidman, J.G., Smith, J.A., and Struhl, K. (1990). Current Protocols in Molecular Biology, Vol. 1. (New York: Wiley).
2. Bilous, P.T., Cole. S.T., Anderson, W.F., and Weiner, J.H. (1988). Nucleotide sequence of the dmsABC operon encoding the anaerobic dimethylsulphoxide reductase of Escherichia coli. Mol. Microbiol. 2.785-795.
3. Bullock, W.O., Fernandez. J.M., and Short. J.M. (1987). XL1-Blue: A high efficiency plasmid transforming recA E. coli strain with beta-galactosidase selection. Bio Techniques, 376.
4. Feinberg, A.R., and Vogelstein, B. (1983). A technique for radio-labeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 732.6-13.
5. Feinberg, A.R., and Vogelstein. B. (1984). A technique for radio-labeling DNA restriction endonuclease fragments to high specific activity. Addendum. Anal. Biochem. 137, 266-267.
6. Fonstein. M., and Haselkorn, R. (1993). Chromosomal structure of Rhodobacter capsulatus strain SB1003: cosmid encyclopedia and high-resolution physical and genetic map. Proc. Nat. Acad. Sci. USA 90, 2522-2526.
7. Fonstein, M., Zheng, S., and Haselkorn, R. (1992). Physical map of the genome of Rhodobacter capsulatus SB 1003. J. Bacteriol. 774, 4070-4077.
8. Fonstein, M., Koshy. E.G. Nikolskaya. T., Mourachov, P., and Haselkorn, R. (1995). Refinement of the high-resolution physical and genetic map of Rhodobacter capsulatus and genome surveys using blots of the cosmid encyclopedia. EMBO Journal 74, 1827-1841.
9. George, G.N., Hilton, J., and Rajagopalan, K.V. (1996). X-ray absorption spectroscopy of Dimethyl Sulfoxide Reductase from Rhodobacter sphaeroides. J. Am. Chem. Soc. 178, 1113-1117.
10. Gold, L., Pribnow. D. Schneider. T. Shinedling. S. Singer, B. S. and Storno. G. (1981). Translation initiation in prokaryotes. Annu. Rev. Microbiol. 35.365-403.
11. Hanahan, D. (1983). Studies on transformation of Escherichia coli with Plasmids. J. Mol. Biol. 166, 557-580.
12. Knablein. J. Mann, K., Ehlert, S. Fonstein, M., Huber, R., and Schneider, F (1996). Isolation, cloning, sequence analysis and localization of the operon encoding Dimethyl Sulfoxide/Trimethylamine N-oxide Reductase from Rhodobacter capsulatus. J. Mol. Boi. 263, 40-52
13. LeGall, J., and Peck, H.D. (1987). Amino-terminal amino acid sequences of electron transfer proteins from Gram-negative bacteria as indicators of their cellular localization: the sulphate reducing bacteria. FEMS Microbiol Rev 46.35-40.
14. McEwan. A.G. (1994). Photosynthetic electron transport and anaerobic metabolism in purple non-sulfur phototrophic bacteria. Anton. Leeuw. 66, 151-164.
15. McEwan, A.G., Richardson, DJ., Hudig, H., Ferguson, S.J., and Jackson, J.B. (1989). Identification of cytochromes involved in the electron transport to trimethylamine N-oxide / dimethylsulfoxide reductase in Rhodobacter capsulatus. Biochim. Biophys. Acta 973, 308-314.
16. Mejean, V., lobbi-Nivol, C., Lepelletier, M., Giordano, G., Chippaux, M., and Pascal, M., (1994). TMAO anaerobic respiration in E. coli: involvement of the tor operon. Mol. Microbiol. 77, 1169-1179.
17. Pascal, M.C., Lepelletier, M., Giordano, G., and Chippaux, M. (1991). A regulatory mutant of trimethylamine N-oxid reductase of E. coli K-12. FEMS Microbiol Lett 78, 297-300.
18. Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual. (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press).
19. Schneider, G., and Wrede, P. (1994). The rational design of amino acid sequences by artificial neural networks and simulated molecular evolution: De novo design of an idealized leader peptidase cleavage site. Biophys. J. 66, 335-344.
20. Schneider, F.,. Löwe, J., Huber, R., Schindelin, H., Kisker, C., and Knäblein, J. (1996). Crystal structure of Dimethyl sulfoxide reductase from Rhodobacter capsulatus at a 1.88 Â Resolution. J. Mol. Biol. 263, 53-69.
21. Schultz, B.E., Hille, R., and Holm, R.H. (1995). Direct oxygen atom transfer in the mechanism of action of Rhodobacter sphaeroides Dimethyl Sulfoxide Reductase. J. Am. Chem. Soc. 7 77, 827-828.
22. Shine, J., and Dalgarno, L. (1974). The 3'-terminal sequence of Escherichia col 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites. Proc. Nat. Acad. Sci. USA 77, 1342-1346.
23. Stallmeyer, B., Nerlich, A., Schiemann, J., Brinkmann, H., and Mendel, R.R. (1995). Molybdenum cofactor biosynthesis: The A thalinana cDNAcnx7 encodes a multifunctional two-domain protein homologous to a mammalian neuroprotein, the insect protein Cinnamon and three E. coli proteins. Plant J. 8, 751-762.
24. Stormo, G.D., Schneider, TD., and Gold, LM. (1982). Characterization of translational initiation sites in E. coli. Nucleic Acids Res. 10, 2971-2996.
25. Von Heijne, G. (1984). How signal sequences maintain cleavage specifity. J. Mol. Biol. 7 73, 243-251.
26. Von Heijne, G. (1988). Transcending the impenetrable: how proteins come to terms with membranes. Biochim. Biophys. Acta 947, 307-333.
27. Von Heijne, G., and Segrest, J. R.(1987). The leader peptides from bacteriorhodopsin and halorhodopsin are potential membran-spanning amphipathic helices. FEBS Lett. 273, 238-240.
28. Weaver. RF, Wall, J.D., and Gest, H. (1975a). Characterization of Rhodobacter capsulata under anaerobic dark conditions with DMSO. Arch. Bioch. Biophys. 787, 411-418.
29. Weaver, P. F., Wall, J.D., and Gest, H. (1975b). Characterization of Rhodopseudomonas capsulata. Arch. Microb. 105, 207-216.
30. Wootton, J.C., Nicolson, R.E., Cock, J.M., Walters, D.E., Burke, J.R., Doyle, W.A., and Bray, R.C. (1991). Enzymes depending on the pterin molybdenum cofactor: sequence families, spectroscopic properties of molybdenum and possible cofactor-bind-ing domains. Biochim. Biophys. Acta 1057, 157-185.
31. Yoshida, Y., Takai, M., Satoh, T., and Takami, S. (1991). Molybdenum requirement for translocation of dimethyl sulfoxide reductase to the periplasmic space in a photodenitrifier, Rhodobactersphaeroides f. sp. denitrificans. J. Bacterid. 7 73, 3277-3281.