Transcriptional and structural study of a region of two convergent overlapping yeast genes

Current Microbiology

Volumn 39, Issue 6, 1999, Pages 369-373

  Puig, Sergi ^a   Pérez Ortín, José E ^a   Matallana, Emilia ^a  

^a UNIVERSITY OF VALENCIA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMATIN; FUNGAL GENETICS; GENE MUTATION; GENETIC TRANSCRIPTION; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE;

FUNGAL PROTEINS; GENE DELETION; GENE EXPRESSION REGULATION, FUNGAL; GENES, FUNGAL; GENES, OVERLAPPING; NUCLEOSOMES; PROMOTER REGIONS (GENETICS); SACCHAROMYCES CEREVISIAE; TRANSCRIPTION, GENETIC;

SACCHAROMYCES CEREVISIAE;

EID: 0345034819     PISSN: 03438651     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002849900474     Document Type: Article

References (25)

1. Atkins D, Arndt GM, Izant JG (1994) Antisense gene expression in yeast. Biol Chem Hopp-Seyler 375:721-729
2. Bradford M (1976) A rapid and sensitive method for the quantitation of microgram amounts of protein utilizing the principle of protein dye binding. Anal Biochem 72:248-254
3. Carlson M, Botstein D (1982) Two differentially regulated mRNAs with different 5′ ends encode secreted and intacellular forms of invertase. Cell 33:843-848
4. Cavalli G, Bachmann D, Thoma F (1996) Inactivation of topoisomerases affects transcription-dependent chromatin transitions in rDNA but not in a gene transcribed by RNA polymerase II. EMBO J 15:590-597
5. Dujon B (1996) The yeast genome project: What did we learn? Trends Genet 12:263-270
6. Farrell CM, Lukens LN (1995) Naturally occurring antisense transcripts are present in chick embryo chondrocytes simultaneously with the down regulation of the alpha 1 (1) collagen gene. J Biol Chem 270:3400-3408
7. Frohman MA, Dush MK, Martin GR (1988) Rapid production of full-length cDNAs from rare transcripts: Amplification using a single gene-specific oligonucleotide primer. Proc Natl Acad Sci USA 85:8998-9002
8. Gartenberg MR, Wang JC (1993) Identification of barriers to rotation of DNA segments in yeast from the topology of DNA rings excised by an inducible site-specific recombinase. Proc Natl Acad Sci USA 90:10514-10518
9. Gietz RD, Shiestl RH, Willems AR, Woods RA (1995) Studies on the transformation of the intact yeast cells by the LiAc/ss-DNA/ PEG procedure. Yeast 11:355-360
10. Güldener U, Heck S, Fiedler T, Beinhauer J, Hegemann JH (1996) A new efficient gene disruption cassette for repeated use in budding yeast. Nucleic Acids Res 24:2519-2524
11. Hanahan D (1983) Studies on transformation of Escherichia coli strains with plasmids. J Mol Biol 166:557-580
12. Igual JC (1991) Identificación del gen de la 3-oxoacil-CoA tiolasa peroxisomal de Saccharomyces cerevisiae: Estudio de su regulación. PhD thesis. Universitat de València
13. Igual JC, Matallana E, González-Bosch C, Franco L, Pérez-Ortín JE (1991) A new glucose-repressible gene identified from the analysis of chromatin structure in deletion mutants of yeast SUC2 locus. Yeast 7:379-389
14. Middleton B (1973) The oxoacyl-CoA thiolases of animal tissues. Biochem J 132:717-730
15. Orphanides G, LeRoy G, Chang C-H, Luse DS, Reinberg D (1998) FACT, a factor that facilitates transcript elongation through nucleosomes. Cell 92:105-116
16. Pérez-Ortín JE, Estruch F, Matallana E, Franco L (1986) Sliding-end-labelling. A method to avoid artifacts in nucleosome positioning. FEBS Lett 208:31-33
17. Pérez-Ortín JE, Estruch F, Matallana E, Franco L (1987) Fine analysis of the chromatin structure of the yeast SUC2 gene and of its changes upon derepression. Comparison between the chromosomal and plasmid-inserted copies. Nucleic Acids Res 15:6937-6954
18. Peterson JA, Myers AM (1993) Functional analysis of mRNA 3′ end formation signals in the convegent and overlapping transcription units of the S. cerevisiae genes RHO1 and MRP2. Nucleic Acids Res 21:5500-5508
19. Puig S, Matallana E, Pérez-Ortín JE (1999) Stochastical nucleosome positioning in a yeast chromatin region is not dependent on histone H1. Curr Microbiol 39:168-172
20. Sambrook J, Fristch EF, Maniatis T (1989) Molecular cloning: A laboratory manual, 2d ed. Cold Spring Harbor Laboratory, New York: Cold Spring Harbor Laboratory Press
21. Sherman F, Fink GR, Hicks JB (1986) Methods in yeast genetics. Cold Spring Harbor Laboratory, New York: Cold Spring Harbor Laboratory Press
22. Takayama KM, Inouye M (1990) Antisense RNA. CRC Critical Rev Mol Biol 25:155-184
23. Vanhée-Brossollet C, Vaquero C (1998) Do natural antisense transcripts make sense in eukaryotes? Gene 211:1-9
24. Wu C (1980) The 5′ ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I. Nature 206:854-860
25. Wu HY, Shyy S, Wang JC, Liu LF (1988) Transcription generates positively and negatively supercoiled domains in the template. Cell 53:433-440