-
1
-
-
33845280851
-
Double-Strand cleavage of genomic DNA at a single site by triple helix formation
-
Strobel, S. A., Moser, H. E. and Dervan, P. B. (1988) Double-Strand cleavage of genomic DNA at a single site by triple helix formation", J. Am. Chem. Soc., 110, 7929-9.
-
(1988)
J. Am. Chem. Soc.
, vol.110
, pp. 7929-7929
-
-
Strobel, S.A.1
Moser, H.E.2
Dervan, P.B.3
-
2
-
-
0024504005
-
Triple helix formation by oligonucleotides on DNA extended to the physiological pH range
-
Povsic, T. J. and Dervan, P. B. (1989) Triple helix formation by oligonucleotides on DNA extended to the physiological pH range", J. Am. Chem. Soc., 111, 3059-61.
-
(1989)
J. Am. Chem. Soc.
, vol.111
, pp. 3059-3061
-
-
Povsic, T.J.1
Dervan, P.B.2
-
3
-
-
11944267365
-
Antisense oligonucleotides: A new therapeutic principle
-
Uhlmann, E. and Peyman, A. (1990) Antisense oligonucleotides: A new therapeutic principle", Chem. Rev., 90, 544-579.
-
(1990)
Chem. Rev.
, vol.90
, pp. 544-579
-
-
Uhlmann, E.1
Peyman, A.2
-
4
-
-
0025084946
-
Thermodynamics of triple helix formation
-
Pilch, D. S., Brousseau, R. and Shafer, R. H. (1990) Thermodynamics of triple helix formation", Nucl. Acids Res., 18, 5743-50.
-
(1990)
Nucl. Acids Res.
, vol.18
, pp. 5743-5750
-
-
Pilch, D.S.1
Brousseau, R.2
Shafer, R.H.3
-
6
-
-
0025895932
-
Structure, stability, and thermodynamics of a short intermolecular purine-purine-pyrimidine triple helix
-
Pilch, D. S., Levenson, C. and Shafer, R. H. (1991) Structure, stability, and thermodynamics of a short intermolecular purine-purine-pyrimidine triple helix", Biochemistry, 30, 6081-7.
-
(1991)
Biochemistry
, vol.30
, pp. 6081-6087
-
-
Pilch, D.S.1
Levenson, C.2
Shafer, R.H.3
-
7
-
-
0025604606
-
Thermodynamic characteristic of the stability and the melting behavior of a DNA triplex
-
Plum, E. G., Park, Y. W., Singleton, S. F., Dervan, P. B. and Breslauer, K. J. (1990) Thermodynamic characteristic of the stability and the melting behavior of a DNA triplex", Proc. Natl. Acad. Sci. USA, 87, 9436-40.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 9436-9440
-
-
Plum, E.G.1
Park, Y.W.2
Singleton, S.F.3
Dervan, P.B.4
Breslauer, K.J.5
-
8
-
-
0023619361
-
Sequence-Specific cleavage of double helical DNA by triple helix formation
-
Moser, H. E. and Dervan, P. B. (1987) "Sequence-Specific cleavage of double helical DNA by triple helix formation", Science, 238, 645-650.
-
(1987)
Science
, vol.238
, pp. 645-650
-
-
Moser, H.E.1
Dervan, P.B.2
-
9
-
-
33845280851
-
Double-strand cleavage of genomic DNA at a single site by triple-helix formation
-
Strobel, S. A., Moser, H. E. and Dervan, P. B. (1988) Double-strand cleavage of genomic DNA at a single site by triple-helix formation", J. Am. Chem. Soc., 110, 7927-29.
-
(1988)
J. Am. Chem. Soc.
, vol.110
, pp. 7927-7929
-
-
Strobel, S.A.1
Moser, H.E.2
Dervan, P.B.3
-
10
-
-
0023652076
-
Sequence Specific Recognition, photocrosslinking and cleavage of the DNA double helix by oligo [a] thymidylate covalently linked to an azidoproflavine derivative
-
Le Doan, T., Perroualt, L., Praseuth, D. and Helene, C. (1987) Sequence Specific Recognition, photocrosslinking and cleavage of the DNA double helix by oligo [a] thymidylate covalently linked to an azidoproflavine derivative", Nucleic Acid Res., 15, 1749-60.
-
(1987)
Nucleic Acid Res.
, vol.15
, pp. 1749-1760
-
-
Le Doan, T.1
Perroualt, L.2
Praseuth, D.3
Helene, C.4
-
11
-
-
0025296015
-
Site-specific cleavage of a yeast chromosome by oligonucleotide-directed triple-helix formation
-
Strobel, S. A. and Dervan, P. B. (1990) Site-specific cleavage of a yeast chromosome by oligonucleotide-directed triple-helix formation", Science, 249, 73-5.
-
(1990)
Science
, vol.249
, pp. 73-75
-
-
Strobel, S.A.1
Dervan, P.B.2
-
12
-
-
0024357372
-
Inhibition of DNA binding proteins by oligonucleotide-directed triple helix formation
-
Maher, L. J., Wold, B. and Dervan, P. B. (1989) Inhibition of DNA binding proteins by oligonucleotide-directed triple helix formation, Science, 245, 725-30.
-
(1989)
Science
, vol.245
, pp. 725-730
-
-
Maher, L.J.1
Wold, B.2
Dervan, P.B.3
-
13
-
-
0025650262
-
Sequence-specific alkylation of double-helical DNA by oligonucleotide-directed triple-helix formation
-
Povsic, T. J. and Dervan, P. B. (1990) Sequence-specific alkylation of double-helical DNA by oligonucleotide-directed triple-helix formation", J. Am. Chem. Soc., 112, 9428-30.
-
(1990)
J. Am. Chem. Soc.
, vol.112
, pp. 9428-9430
-
-
Povsic, T.J.1
Dervan, P.B.2
-
14
-
-
0023802737
-
Site-specific oligonucleotide binding represses transcription of the human c-myc gene in vitro
-
Cooney, M., Czernuszewicz, G., Postal, E. H., Flint, S. J. and Hogan, M. E. (1988) Site-specific oligonucleotide binding represses transcription of the human c-myc gene in vitro",Science, 241, 456-9.
-
(1988)
Science
, vol.241
, pp. 456-459
-
-
Cooney, M.1
Czernuszewicz, G.2
Postal, E.H.3
Flint, S.J.4
Hogan, M.E.5
-
15
-
-
0025949803
-
Binding of triple helix forming oligonucleotides to sites in gene promoters
-
Durland, R. H., Kessler, D. J., Gunnell, S., Duvic, M., Pettitt, B. M. and Hogan, M. E. (1991) Binding of triple helix forming oligonucleotides to sites in gene promoters",Biochemistry, 30, 9246-55.
-
(1991)
Biochemistry
, vol.30
, pp. 9246-9255
-
-
Durland, R.H.1
Kessler, D.J.2
Gunnell, S.3
Duvic, M.4
Pettitt, B.M.5
Hogan, M.E.6
-
16
-
-
0026668192
-
The influence of single base triplet changes on the stability of a pur.pur.pyr triple helix determined by affinity cleaving
-
Beal, P. A. and Dervan, P. B. (1992) "The influence of single base triplet changes on the stability of a pur.pur.pyr triple helix determined by affinity cleaving", Nucleic Acids Res., 20, 2773-6.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 2773-2776
-
-
Beal, P.A.1
Dervan, P.B.2
-
17
-
-
0001457472
-
Hoogsteen versus reversed-Hoogsteen base pairing: DNA triple helices
-
Cheng, Y. K. and Pettitt, B. M. (1992) "Hoogsteen versus reversed-Hoogsteen base pairing: DNA triple helices", J. Am. Chem. Soc., 114, 4465-74.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 4465-4474
-
-
Cheng, Y.K.1
Pettitt, B.M.2
-
18
-
-
0025237084
-
Recognition of mixed sequence duplex DNA by alternate -strand triple-helix formation
-
Horne, D. A. and Dervan, P. B. (1990) "Recognition of mixed sequence duplex DNA by alternate -strand triple-helix formation", J. Am. Chem. Soc.,112, 2435-7.
-
(1990)
J. Am. Chem. Soc.
, vol.112
, pp. 2435-2437
-
-
Horne, D.A.1
Dervan, P.B.2
-
19
-
-
0017107511
-
Models of triple-stranded polynucleotides with optimized stereochemistry
-
Arnott, S., Bond, P. J., Selising, E. and Smith, P. J. C. (1976) "Models of triple-stranded polynucleotides with optimized stereochemistry", Nucleic Acids Res., 3, 10, 2459.
-
(1976)
Nucleic Acids Res.
, vol.3
, pp. 10
-
-
Arnott, S.1
Bond, P.J.2
Selising, E.3
Smith, P.J.C.4
-
21
-
-
1542668409
-
DNA triple helices. A molecular dynamics study
-
Laughton, C. A. and Niedle, S. (1991) "DNA triple helices. A molecular dynamics study ", J. Chim. Phys., 88, 2597-2603.
-
(1991)
J. Chim. Phys.
, vol.88
, pp. 2597-2603
-
-
Laughton, C.A.1
Niedle, S.2
-
22
-
-
0025006294
-
6 and its complex with a minor groove binding drug
-
6 and its complex with a minor groove binding drug", J. Am. Chem. Soc., 112, 4539-4545.
-
(1992)
J. Am. Chem. Soc.
, vol.112
, pp. 4539-4545
-
-
Umemoto, K.1
Sarma, M.H.2
Gupta, G.3
Luo, J.4
Sarma, R.H.5
-
23
-
-
0028781381
-
DNA triplexes: Solution structures, hydrations sites, energetics, interactions, and function
-
Radhakrishnan, I. and Patel, D. J. (1994) "DNA triplexes: Solution structures, hydrations sites, energetics, interactions, and function", Biochemistry, 33, 1405-16.
-
(1994)
Biochemistry
, vol.33
, pp. 1405-1416
-
-
Radhakrishnan, I.1
Patel, D.J.2
-
24
-
-
0028177693
-
Solution structure of a pyrimidine.purine.pyrimidine DNA triplex containing T. AT, C+GC and G.TA triplets
-
Radhakrishnan, I. and Patel, D. J. (1994) "Solution structure of a pyrimidine.purine.pyrimidine DNA triplex containing T. AT, C+GC and G.TA triplets", Structure, 2, 17-32.
-
(1994)
Structure
, vol.2
, pp. 17-32
-
-
Radhakrishnan, I.1
Patel, D.J.2
-
25
-
-
0028033356
-
Solution structure and hydration patterns of a pyrimidine.purine.pyrimidine DNA triplex containing a novel T.CG base triple
-
Radhakrishnan, I. and Patel, D. J. (1994) "Solution structure and hydration patterns of a pyrimidine.purine.pyrimidine DNA triplex containing a novel T.CG base triple", J. Mol. Biol., 241, 600-619.
-
(1994)
J. Mol. Biol.
, vol.241
, pp. 600-619
-
-
Radhakrishnan, I.1
Patel, D.J.2
-
26
-
-
1542459069
-
A Raman study of low frequency intrahelical modes in A-DNA, B-DNA, and C-DNA
-
Thomas, G. A. and Peticolas, W. L. (1991) "A Raman study of low frequency intrahelical modes in A-DNA, B-DNA, and C-DNA", J. Biomol. Struct. Dyn., 9, 437-445.
-
(1991)
J. Biomol. Struct. Dyn.
, vol.9
, pp. 437-445
-
-
Thomas, G.A.1
Peticolas, W.L.2
-
27
-
-
0026453124
-
Structure of d(T)n.d(A)n.d(T)n the DNA triple helix has B-form geometry with C2'-endo sugar pucker
-
Howard, F. B., Miles, H. T., Liu, K., Frazier, J., Raghunathan, G. and Sasisekharan, V. (1992) "Structure of d(T)n.d(A)n.d(T)n the DNA triple helix has B-form geometry with C2'-endo sugar pucker", Biochemistry, 31, 10671-7.
-
(1992)
Biochemistry
, vol.31
, pp. 10671-10677
-
-
Howard, F.B.1
Miles, H.T.2
Liu, K.3
Frazier, J.4
Raghunathan, G.5
Sasisekharan, V.6
-
28
-
-
0001605673
-
Sugar conformations in intramolecular DNA triplexes determined by coupling constants obtained by automated simulation of COSY cross peaks
-
Macaya, R. F., Schultze, P. and Feigon, J. (1992) "Sugar conformations in intramolecular DNA triplexes determined by coupling constants obtained by automated simulation of COSY cross peaks", J. Am. Chem. Soc., 114, 781-3.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 781-783
-
-
Macaya, R.F.1
Schultze, P.2
Feigon, J.3
-
30
-
-
0028367083
-
Fiber-type X-ray diffraction patterns from single crystals of triple helical DNA
-
Liu, K., Miles, H. T., Parris, K. D. and Sasisekharan, V. (1994) "Fiber-type X-ray diffraction patterns from single crystals of triple helical DNA", Nat. Struct. Biol., 1, 11-12.
-
(1994)
Nat. Struct. Biol.
, vol.1
, pp. 11-12
-
-
Liu, K.1
Miles, H.T.2
Parris, K.D.3
Sasisekharan, V.4
-
31
-
-
84963253922
-
10 have A-form or B-form geometry?
-
10 have A-form or B-form geometry?", Molecular Simulation, 14, 275-89.
-
(1995)
Molecular Simulation
, vol.14
, pp. 275-289
-
-
Laughton, C.A.1
-
32
-
-
0001494518
-
Recognition of All Four Base Pairs of Double-Helical DNA by Triple-Helix Formation: Design of Nonnatural Deoxyribonucleosides for Pyrimidine. Purine Base Pair Binding
-
Griffin, L. C., Kiessling, L. L., Beal, P. A., Gillespie, P. and Dervan, P. B. (1992) "Recognition of All Four Base Pairs of Double-Helical DNA by Triple-Helix Formation: Design of Nonnatural Deoxyribonucleosides for Pyrimidine. Purine Base Pair Binding", J. Am. Chem. Soc., 114, 7976-82.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 7976-7982
-
-
Griffin, L.C.1
Kiessling, L.L.2
Beal, P.A.3
Gillespie, P.4
Dervan, P.B.5
-
33
-
-
0024473767
-
Recognition of Thymine. Adenine Base Pairs by Guanine in a Pyrimidine Triple Helix Motif
-
Griffin, L. C. and Dervan, P. B. (1989) "Recognition of Thymine. Adenine Base Pairs by Guanine in a Pyrimidine Triple Helix Motif", Science, 245, 967-71.
-
(1989)
Science
, vol.245
, pp. 967-971
-
-
Griffin, L.C.1
Dervan, P.B.2
-
34
-
-
0001594480
-
Nonnatural Deosyribonucleotide D3 Incorporated in an Intramolecular DNA Triplex Binds Sequence-Specifically by Intercalation
-
Koshlap, K. M., Gilliespie, P., Dervan, P. B. and Feigon, J. "Nonnatural Deosyribonucleotide D3 Incorporated in an Intramolecular DNA Triplex Binds Sequence-Specifically by Intercalation", J. Am. Chem. Soc., 115, 7908-9.
-
J. Am. Chem. Soc.
, vol.115
, pp. 7908-7909
-
-
Koshlap, K.M.1
Gilliespie, P.2
Dervan, P.B.3
Feigon, J.4
-
35
-
-
0025830451
-
Triplex Formation of Oligonucleotides Conataining 2′-O-Methylpseudoisocytidine in Substitution for 2′-Deoxycytidine
-
Ono, A., Ts'o P.O. and Kan, L. (1991) "Triplex Formation of Oligonucleotides Conataining 2′-O-Methylpseudoisocytidine in Substitution for 2′-Deoxycytidine", J.Am. Chem. Soc., 113, 4032-3.
-
(1991)
J.Am. Chem. Soc.
, vol.113
, pp. 4032-4033
-
-
Ono, A.1
Ts'o, P.O.2
Kan, L.3
-
36
-
-
1642631504
-
Design of a nonnatural deoxyribosucleoside for recognition of GC base pairs by oligonucleotide-directed triple helix formation
-
Koh, J. S. and Dervan, P. B. (1992) "Design of a nonnatural deoxyribosucleoside for recognition of GC base pairs by oligonucleotide-directed triple helix formation", J. Am. Chem. Soc., 114, 1470-8.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 1470-1478
-
-
Koh, J.S.1
Dervan, P.B.2
-
37
-
-
0027337755
-
Molecular recognition of Watson-Crick base-pair reversals in triple-helix formation: Use of nonnatural oligonucleotide bases
-
Mohan, V., Cheng, Y. K., Marlow, G. E. and Pettitt, B. M. (1993) "Molecular recognition of Watson-Crick base-pair reversals in triple-helix formation: use of nonnatural oligonucleotide bases", Biopolymers, 33, 1317-25.
-
(1993)
Biopolymers
, vol.33
, pp. 1317-1325
-
-
Mohan, V.1
Cheng, Y.K.2
Marlow, G.E.3
Pettitt, B.M.4
-
38
-
-
1542563491
-
Molecular dynamics simulations of novel Hoogsteen-like bases that recognize the T-A base pair by DNA triplex formation
-
in press
-
Rothman, J. H. and Richards, W. G. "Molecular dynamics simulations of novel Hoogsteen-like bases that recognize the T-A base pair by DNA triplex formation", Biopolymers (in press).
-
Biopolymers
-
-
Rothman, J.H.1
Richards, W.G.2
-
39
-
-
0004279414
-
-
University of California, San Francisco
-
Pearlman, D. A., Case, D. A., Caldwell, J.C., Siebel, G. L., Singh, U. C., Wiener, P. A. and Kollman, P. A. (1991) AMBER 4.1, University of California, San Francisco.
-
(1991)
AMBER 4.1
-
-
Pearlman, D.A.1
Case, D.A.2
Caldwell, J.C.3
Siebel, G.L.4
Singh, U.C.5
Wiener, P.A.6
Kollman, P.A.7
-
40
-
-
0343889438
-
-
Molecular Simulations, Inc., Burlington, MA 01803-5297
-
QUANTA 4.0 (1994) Molecular Simulations, Inc., Burlington, MA 01803-5297
-
(1994)
QUANTA 4.0
-
-
-
41
-
-
1542668410
-
Calculating the electrostatic potentail of molecules in solution-method and error assessment
-
Gilson, M. K., Sharp, K. A. and Honig, B. (1987) "Calculating the electrostatic potentail of molecules in solution-method and error assessment", J. Comp. Chem., 12, 435.
-
(1987)
J. Comp. Chem.
, vol.12
, pp. 435
-
-
Gilson, M.K.1
Sharp, K.A.2
Honig, B.3
-
42
-
-
0025390935
-
MOPAC - A semiemperical molecular-orbital program
-
Stewart, J. J. P. (1990) "MOPAC - A semiemperical molecular-orbital program", J. Comp. Aided Mol. Design, 4, 1.
-
(1990)
J. Comp. Aided Mol. Design
, vol.4
, pp. 1
-
-
Stewart, J.J.P.1
-
43
-
-
0004133516
-
-
Revision J. Gaussian Inc., Pittsburgh, PA
-
Frisch, M. J., Head-Gordon, M., Trucks, G. W., Foresman, J. B., Schlegel, H. B., Ragavachari, K., Robb, M., Binkley, J. S., Gonzalez, C., Defrees, D. J., Fox, D. J., Whiteside, R. A., Seeger, R., Melius, C. F., Baker, J., Martin, L. R., Kahn, L. R., Kahn, L. R., Stewart, J. J. P., Topiol, S. and Pople, J. A. GAUSSIAN 90, 1990, Revision J. Gaussian Inc., Pittsburgh, PA.
-
(1990)
GAUSSIAN 90
-
-
Frisch, M.J.1
Head-Gordon, M.2
Trucks, G.W.3
Foresman, J.B.4
Schlegel, H.B.5
Ragavachari, K.6
Robb, M.7
Binkley, J.S.8
Gonzalez, C.9
Defrees, D.J.10
Fox, D.J.11
Whiteside, R.A.12
Seeger, R.13
Melius, C.F.14
Baker, J.15
Martin, L.R.16
Kahn, L.R.17
Kahn, L.R.18
Stewart, J.J.P.19
Topiol, S.20
Pople, J.A.21
more..
-
44
-
-
84988098098
-
Atomic charges derived from electrostatic potentials-a detailed study
-
Chirlian, L. E. and Francl, M. M. (1987) "Atomic charges derived from electrostatic potentials-a detailed study", J. Comp. Chem., 8, 894.
-
(1987)
J. Comp. Chem.
, vol.8
, pp. 894
-
-
Chirlian, L.E.1
Francl, M.M.2
-
45
-
-
33646940952
-
Numerical intergration of the cartesion equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert, J. P., Ciccotti, G. and Berendsen, H. J. C. (1977) "Numerical intergration of the cartesion equations of motion of a system with constraints: molecular dynamics of n-alkanes", J. Comput. Phys., 23, 327.
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 327
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
46
-
-
0026000474
-
n DNA triplexes in solution-imino and amino proton and nitrogen markers of G·TA base triple formation
-
n DNA triplexes in solution-imino and amino proton and nitrogen markers of G·TA base triple formation", Biochemistry, 30, 9022-9030.
-
(1991)
Biochemistry
, vol.30
, pp. 9022-9030
-
-
Radhakrishnan, I.1
Gao, X.2
De Los Santos, C.3
Live, D.4
Patel, D.J.5
-
47
-
-
0026554487
-
3-dimensional homonuclear NOESY-TOCSY of an intramolecular pyrimidine.purine.pyrimidine DNA triplex containing a central G. TA triplex-nonexchangeable proton assignments and structural implications
-
Radhakrishnan, I., Patel, D. J. and Gao, X. (1992) "3-dimensional homonuclear NOESY-TOCSY of an intramolecular pyrimidine.purine.pyrimidine DNA triplex containing a central G. TA triplex-nonexchangeable proton assignments and structural implications", Biochemistry, 31, 2514-2523.
-
(1992)
Biochemistry
, vol.31
, pp. 2514-2523
-
-
Radhakrishnan, I.1
Patel, D.J.2
Gao, X.3
-
48
-
-
0029156677
-
Novel nucleotide bases for DNA duplex recognition by triple helix formation
-
Rothman, J. H. and Richards, W. G. (1995) "Novel nucleotide bases for DNA duplex recognition by triple helix formation", J. Chem. Soc. Chem. Comm., 1589-90.
-
(1995)
J. Chem. Soc. Chem. Comm.
, pp. 1589-1590
-
-
Rothman, J.H.1
Richards, W.G.2
|