Molecular dynamics simulation of crystal-induced membranolysis

Journal of Physical Chemistry B

Volumn 107, Issue 44, 2003, Pages 12346-12351

  Wierzbicki, Andrzej ^a   Dalal, Pranav ^b   Madura, Jeffry D ^b   Cheung, Herman S ^c  

^a UNIVERSITY OF SOUTH ALABAMA   (United States)

^b DUQUESNE UNIVERSITY   (United States)

^c University of Miami College of Engineering   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; BIOLOGICAL MEMBRANES; COMPUTER SIMULATION; LIPIDS; MOLECULAR DYNAMICS;

CALCIUM PYROPHOSPHATE DIHYDRATE; CRYSTAL INDUCED MEMBRANOLYSIS; DIMYRISTOYL PHOSPHATIDYLCHOLINE; WATER PENETRATION;

CALCIUM COMPOUNDS;

EID: 0344924797     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp0305988     Document Type: Article

References (45)

1. Doyle, D. V. J. Pathol. 1982, 136, 199.
2. Ryan, L. M.; McCarty, D. J. Calcium Phosphate Crystal Deposition Disease, Pseudogout, and Articular Chondrocalcinosis. In Arthritis and Allied Conditions, 13th ed.; Koopman, W. J., Ed.; Williams and Wilkins: Baltimore, 1997; p 2103.
3. Ryan, L. M.; Cheung, H. S. Rheum. Dis. Clin. North Am. 1999, 25, 257.
4. Terkeltaub, R. A. Pathogenesis and Treatment of Crystal-Induced Inflammation. In Arthritis and Allied Conditions, 13th ed.; Koopman, W. J., Ed.; Williams and Wilkins: Baltimore, 1997; Vol. 2, p 2085.
5. Mandel, N. S. Arthritis Rheum. 1976, 19, 439.
6. Lieske, J. C.; Norris R.; Toback, F. G. Am. J. Physiol. 1997, 273, F224.
7. Lieske, J. L.; Toback, F. G.; Deganello, S. Calcif. Tissue Int. 1996, 58, 195.
8. Lieske, J. C.; Leonard, R.; Swift, H.; Toback, F. G. Am. J. Physiol. 1996, 270, F192.
9. Brown, M. F., Chan, S. I., Eds.; Bilayer Membranes: Deuterium and Carbon-13 NMR; Wiley: New York, 1996, p 871.
10. Brown, M. F., Ed.; Membrane Structure and Dynamics Investigated with NMR Spectroscopy; Birkhäuser: Boston, 1996; p 175.
11. Salamon, Z.; Wang, Y.; Soulages, J. L.; Brown, M. F.; Tollin, G. Biophys. J. 1996, 71, 283.
12. Nevzorov, A. A.; Trouard, T. P.; Brown M. F. Phys. Rev. E 1998, 58, 2259.
13. Trouard, T. P.; Nevzorov, A. A.; Alam, T. M.; Job, C.; Zajicek, J.; Brown, M. F. J. Chem. Phys. 1999, 110, 8802.
14. Salamon, Z.; Brown, M. F.: Tollin, G. Trends Biochem. Sci. 1999, 24, 213.
15. White, S. H.; Wiener, M. C. Determination of the Structure of Fluid Lipid Bilayer Membranes; In Permeability and Stability of Lipid Bilayers; Disalvo, E. A., Simon, S. A., Eds.; CRC Press: Boca Raton, FL, 1995; p 1.
16. White, S. H., Wiener, M. C. The Liquid-Crystallographic Structure of Fluid Lipid Bilayer Membranes. In Biological Membranes; Merz, K., Jr., Roux, B., Eds.; Birkhauser: Boston, 1996; pp 127-144.
17. Sallis, J. D.; Shankar, R.; Rees, B.; Thomson, R. Biochem. Med. Metabolic Biol. 1989, 41, 56.
18. Berneche, S.; Nina, M.; Roux, B. Biophys. J. 1998, 75, 1603.
19. Lin, J.-H.; Baumgaertner, A. Biophys. J. 2000, 78, 1714.
20. Bachar, M.; Becker, O. M. Biophys. J. 2000, 78, 1359.
21. Terwilliger, T. C.; Weissman, L.; Eisenberg, D. Biophys. J. 1982, 37, 353.
22. Pasenkiewicz-Gierula, M; Takaoka, Y.; Miyagawa, H.; Kitamura, K.; Kusumi, A. Biophys. J. 1999, 76, 1228.
23. Brooks, B. R.; Bruccoleri, R. E.; Olafson, B. D.; States, D. J.; Swaminathan, S.; Karplus, M. J. Comput. Chem. 1983, 4, 187.
24. Woolf, T. B.; Roux, B. Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 11631.
25. Woolf, T. B.; Roux, B. Molecular Dynamics of Pf1 Coat Protein in a Phospholipid Bilayer. In Biological Membranes: A Molecular Perspective from Computation and Experiment; Merz, K. M., Roux, B., Eds.; Birkhäuser; Boston, 1996; p 555.
26. Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L. J. Chem. Phys. 1983, 79, 926.
27. MacKerell, A. D., Jr.; Bashford, D.; Bellott, M.; Dunbrack, R. L., Jr.; Evanseck, J. D.; Field, M. J.; Fischer, S.; Gao, J.; Guo, H.; Ha, S.; Joseph-McCarthy, D.; Kuchnir, L.; Kuczera, K.; Lau, F. T. K.; Mattos, C.; Michnick, S.; Ngo, T.; Nguyen, D. T.; Prodhom, B.; Reiher, W. E., III; Roux, B.; Schlenkrich, M.; Smith, J. C.; Stote, R.; Straub, J.; Watanabe, M.; Wiórkierwicz-Kuczera, J.; Yin, D.; Karplus, M. J. Phys. Chem. B 1998, 102, 3586.
28. Feller, S. E.; Yin, D.; Pastor, R. W.; MacKerell, J. A. D. Biophys. J. 1997, 73, 2269.
29. Wierzbicki, A.; Cheung, H. S. THEOCHEM 1998, 454, 287.
30. Mandel, N. S. Acta Crystallogr., Sect. B: Struct. Sci. 1973, B31, 1730.
31. 2 Molecular Modeling Software for Materials Research, Version 4.2; Accelrys, Inc.: San Diego, CA, 2000.
32. Rappe, A. K.; Goddard, W. A., III. J. Phys. Chem. 1991, 95, 3358.
33. Stouch, T. R. Mol. Simul. 1993, 10, 317.
34. Essmann, U.; Berkowitz, M. L. Biophys. J. 1999, 76, 2081.
35. Petrache, H. I.; Tu, K.; Nagle, J. F. Biophys. J. 1999, 76, 2470.
36. Hyvonen, M. T.; Rantala, T. T.; Ala-Korpela, M. Biophys. J. 1998, 73, 2907.
37. Bassolino-Klimas, D.; Alper, H. E.; Stouch, T. R. Biochemistry 1993, 12, 12624.
38. Shen, L.; Bassolino, D.; Stouch, T. R. Biophys. J. 1997, 73, 3.
39. Tieleman, D. P.; Sansom, M. S. P.; Berendsen, H. J. C. Biophys. J. 1999, 76, 40.
40. Tieleman, D. P.; Berendsen, H. J. C.; Sansom, M. S. P. Biophys. J. 1999, 76, 1757.
41. Tieleman, D. P.; Berendsen, H. J. C.; Sansom, M. S. P. Biophys. J. 1999, 76, 3186.
42. Marrink, S.-J.; Berger, O.; Tieleman, P.; Jahnig, F. Biophys. J. 1998, 74, 931.
43. Gelb, M. H.; Jain, M. K.; Hanel, A. M.; Berg, O. G. Annu. Rev. Biochem. 1995, 64, 653.
44. Hristova, K.; Dempsey, C. E.; White, S. H. Biophys. J. 2001, 80, 801.
45. Bigelow, M. W.; Wiessner, J. H.; Kleinman, J. G.; Mandel, N. S. Calcif. Tissue Int. 1997, 60, 375.