-
1
-
-
0035257614
-
New classification system for oxygenase components involved in ring-hydroxylating oxygenations
-
Nam, J. W., Nojiri, H., Yoshida, T., Habe, H., Yamane, H., and Omori. T. (2001) New classification system for oxygenase components involved in ring-hydroxylating oxygenations, Biosci., Biotechnol., Biochem. 65, 254-263.
-
(2001)
Biosci., Biotechnol., Biochem.
, vol.65
, pp. 254-263
-
-
Nam, J.W.1
Nojiri, H.2
Yoshida, T.3
Habe, H.4
Yamane, H.5
Omori, T.6
-
2
-
-
0034029015
-
Aromatic hydrocarbon dioxygenases in environmental biotechnology
-
Gibson, D. T., and Parales, R. E. (2000) Aromatic hydrocarbon dioxygenases in environmental biotechnology, Curr. Opin. Biotechnol. 11, 236-243.
-
(2000)
Curr. Opin. Biotechnol.
, vol.11
, pp. 236-243
-
-
Gibson, D.T.1
Parales, R.E.2
-
3
-
-
0030536478
-
Arene hydroxylases: Metalloenzymes catalysing dioxygenation of aromatic compounds
-
Bertini, I., Cremonini, M. A., Ferretti, S., Lozzi, I., Luchinat, C., and Viezolli, M. S. (1996) Arene hydroxylases: metalloenzymes catalysing dioxygenation of aromatic compounds, Coord. Chem. Rev. 151, 145-160.
-
(1996)
Coord. Chem. Rev.
, vol.151
, pp. 145-160
-
-
Bertini, I.1
Cremonini, M.A.2
Ferretti, S.3
Lozzi, I.4
Luchinat, C.5
Viezolli, M.S.6
-
4
-
-
0031060718
-
Structure-function analysis of the bacterial aromatic ring-hydroxylating dioxygenases
-
Butler, C. S., and Mason, J. R. (1997) Structure-function analysis of the bacterial aromatic ring-hydroxylating dioxygenases, Adv. Microb. Physiol. 38, 47-84.
-
(1997)
Adv. Microb. Physiol.
, vol.38
, pp. 47-84
-
-
Butler, C.S.1
Mason, J.R.2
-
5
-
-
0039302669
-
Dioxygen activation by enzymes containing mononuclear non-heme iron active sites
-
Que, L., Jr., and Ho, R. Y. N. (1996) Dioxygen activation by enzymes containing mononuclear non-heme iron active sites, Chem. Rev. 96, 2607-2624.
-
(1996)
Chem. Rev.
, vol.96
, pp. 2607-2624
-
-
Que Jr., L.1
Ho, R.Y.N.2
-
6
-
-
0347264753
-
Crystal structure of naphthalene dioxygenase: Side-on binding of dioxygen to iron
-
Karlsson, A., Parales, J. V., Parales, R. E., Gibson, D. T., Eklund, H., and Ramaswamy, S. (2003) Crystal structure of naphthalene dioxygenase: side-on binding of dioxygen to iron, Science 299, 1039-1042.
-
(2003)
Science
, vol.299
, pp. 1039-1042
-
-
Karlsson, A.1
Parales, J.V.2
Parales, R.E.3
Gibson, D.T.4
Eklund, H.5
Ramaswamy, S.6
-
7
-
-
0032524127
-
Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase
-
Kauppi, B., Lee, K., Carredano, E., Parales, R. E., Gibson, D. T., Eklund, H., and Ramaswamy, S. (1998) Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase, Structure 6, 571-586.
-
(1998)
Structure
, vol.6
, pp. 571-586
-
-
Kauppi, B.1
Lee, K.2
Carredano, E.3
Parales, R.E.4
Gibson, D.T.5
Eklund, H.6
Ramaswamy, S.7
-
8
-
-
0032989253
-
Aspartate 205 in the catalytic domain of naphthalene dioxygenase is essential for activity
-
Parales, R. E., Parales, J. V., and Gibson, D. T. (1999) Aspartate 205 in the catalytic domain of naphthalene dioxygenase is essential for activity, J. Bacteriol. 181, 1831-1837.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 1831-1837
-
-
Parales, R.E.1
Parales, J.V.2
Gibson, D.T.3
-
9
-
-
0029119568
-
RASMOL: Biomolecular graphics for all
-
Sayle, R., and Milner-White, E. J. (1995) RASMOL: biomolecular graphics for all, Trends Biochem. Sci. 20, 374-376.
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 374-376
-
-
Sayle, R.1
Milner-White, E.J.2
-
10
-
-
0034681304
-
Substrate binding site of naphthalene 1,2-dioxygenase: Functional implications of indole binding
-
Carredano, E., Karlsson, A., Kauppi, B., Choudhury, D., Parales, R. E., Parales, J. V., Lee, K., Gibson, D. T., Eklund, H., and Ramaswamy, S. (2000) Substrate binding site of naphthalene 1,2-dioxygenase: functional implications of indole binding, J. Mol. Biol. 296, 701-712.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 701-712
-
-
Carredano, E.1
Karlsson, A.2
Kauppi, B.3
Choudhury, D.4
Parales, R.E.5
Parales, J.V.6
Lee, K.7
Gibson, D.T.8
Eklund, H.9
Ramaswamy, S.10
-
11
-
-
0031720708
-
Similarities between the antABC-encoded anthranilate dioxygenase and the benABC-encoded benzoate dioxygenase of Acinetobacter sp. strain ADP1
-
Bundy, B. M., Campbell, A. L., and Neidle, E. L. (1998) Similarities between the antABC-encoded anthranilate dioxygenase and the benABC-encoded benzoate dioxygenase of Acinetobacter sp. strain ADP1, J. Bacteriol. 180, 4466-4474.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 4466-4474
-
-
Bundy, B.M.1
Campbell, A.L.2
Neidle, E.L.3
-
12
-
-
0023503634
-
Cloning and expression in Escherichia coli of Acinetobacter calcoaceticus genes for benzoate degradation
-
Neidle, E. L., Shapiro, M. K., and Ornston, L. N. (1987) Cloning and expression in Escherichia coli of Acinetobacter calcoaceticus genes for benzoate degradation, J. Bacteriol. 169, 5496-5503.
-
(1987)
J. Bacteriol.
, vol.169
, pp. 5496-5503
-
-
Neidle, E.L.1
Shapiro, M.K.2
Ornston, L.N.3
-
13
-
-
0020358121
-
Subunit structure of oxygenase component in benzoate-1,2-dioxygenase system from Pseudomonas arvilla C-1
-
Yamaguchi, M., and Fujisawa, H. (1982) Subunit structure of oxygenase component in benzoate-1,2-dioxygenase system from Pseudomonas arvilla C-1, J. Biol. Chem. 257, 12497-12502.
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 12497-12502
-
-
Yamaguchi, M.1
Fujisawa, H.2
-
14
-
-
0009697361
-
EPR and Mössbauer characterization of benzoate 1,2-dioxygenase from P. putida
-
Altier, D. J., Fox, B. G., Münck, E., and Lipscomb, J. D. (1993) EPR And Mössbauer characterization of benzoate 1,2-dioxygenase from P. putida, J. Inorg. Biochem. 51, 300.
-
(1993)
J. Inorg. Biochem.
, vol.51
, pp. 300
-
-
Altier, D.J.1
Fox, B.G.2
Münck, E.3
Lipscomb, J.D.4
-
15
-
-
0035190139
-
Characterization and evolution of anthranilate 1,2-dioxygenase from Acinetobacter sp. strain ADP1
-
Eby, D. M., Beharry, Z. M., Coulter, E. D., Kurtz, D. M., Jr., and Neidle, E. L. (2001) Characterization and evolution of anthranilate 1,2-dioxygenase from Acinetobacter sp. strain ADP1, J. Bacteriol. 183, 109-118.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 109-118
-
-
Eby, D.M.1
Beharry, Z.M.2
Coulter, E.D.3
Kurtz Jr., D.M.4
Neidle, E.L.5
-
16
-
-
0023472472
-
Coomassie blue-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for direct visualization of polypeptides during electrophoresis
-
Schagger, H., and von Jagow, G. (1987) Coomassie blue-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for direct visualization of polypeptides during electrophoresis, Anal. Biochem. 166, 368-379.
-
(1987)
Anal. Biochem.
, vol.166
, pp. 368-379
-
-
Schagger, H.1
Von Jagow, G.2
-
17
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Plainview. NY
-
Sambrook, J., Fritsch, E. F., and Maniatis, T. (1990) Molecular cloning: a laboratory manual, 2nd ed., Cold Spring Harbor Laboratory Press, Plainview. NY.
-
(1990)
Molecular Cloning: A Laboratory Manual, 2nd Ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
18
-
-
0004270170
-
-
Green Publishing and Wiley-Interscience, New York
-
Ausubel, F. A., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A., and Struhl, K. (1990) Current Protocols in Molecular Biology, Green Publishing and Wiley-Interscience, New York.
-
(1990)
Current Protocols in Molecular Biology
-
-
Ausubel, F.A.1
Brent, R.2
Kingston, R.E.3
Moore, D.D.4
Seidman, J.G.5
Smith, J.A.6
Struhl, K.7
-
19
-
-
0023022814
-
Cloning and expression of Acinetobacter calcoaceticus catechol 1,2-dioxygenase structural gene catA in Escherichia coli
-
Neidle, E. L., and Ornston, L. N. (1986) Cloning and expression of Acinetobacter calcoaceticus catechol 1,2-dioxygenase structural gene catA in Escherichia coli, J. Bacteriol. 168, 815-820.
-
(1986)
J. Bacteriol.
, vol.168
, pp. 815-820
-
-
Neidle, E.L.1
Ornston, L.N.2
-
21
-
-
0033539568
-
4] site in rubredoxin by the orientation of a peptide dipole
-
4] site in rubredoxin by the orientation of a peptide dipole, Biochemistry 38, 14803-14809.
-
(1999)
Biochemistry
, vol.38
, pp. 14803-14809
-
-
Eidsness, M.K.1
Burden, A.E.2
Richie, K.A.3
Kurtz Jr., D.M.4
Scott, R.A.5
Smith, E.T.6
Ichiye, T.7
Beard, B.8
Min, T.9
Kang, C.10
-
22
-
-
79953660267
-
4] site in rubredoxin by the orientation of a peptide dipole
-
4] site in rubredoxin by the orientation of a peptide dipole (correction), Biochemistry 39, 626.
-
(2000)
Biochemistry
, vol.39
, pp. 626
-
-
Eidsness, M.K.1
Burden, A.E.2
Richie, K.A.3
Kurtz Jr., D.M.4
Scott, R.A.5
Smith, E.T.6
Lchiye, T.7
Beard, B.8
Min, T.9
Kang, C.10
-
23
-
-
0032189439
-
Calculation of standard transformed formation properties of biochemical reactants and standard apparent reduction potentials of half reactions
-
Alberty, R. A. (1998) Calculation of standard transformed formation properties of biochemical reactants and standard apparent reduction potentials of half reactions, Arch. Biochem. Biophys. 358, 25-39.
-
(1998)
Arch. Biochem. Biophys.
, vol.358
, pp. 25-39
-
-
Alberty, R.A.1
-
24
-
-
0022541362
-
Cloning and expression of Acinetobacter calcoaceticus catBCDE genes in Pseudomonas putida and Escherichia coli
-
Shanley, M. S., Neidle, E. L., Parales, R. E., and Ornston, L. N. (1986) Cloning and expression of Acinetobacter calcoaceticus catBCDE genes in Pseudomonas putida and Escherichia coli, J. Bacteriol. 165, 557-563.
-
(1986)
J. Bacteriol.
, vol.165
, pp. 557-563
-
-
Shanley, M.S.1
Neidle, E.L.2
Parales, R.E.3
Ornston, L.N.4
-
25
-
-
0037199485
-
Benzoate 1,2-dioxygenase from Pseudomonas putida: Single turnover kinetics and regulation of a two-component Rieske dioxygenase
-
Wolfe, M. D., Altier, D. J., Stubna, A., Popescu, C. V., Münck, E., and Lipscomb, J. D. (2002) Benzoate 1,2-dioxygenase from Pseudomonas putida: single turnover kinetics and regulation of a two-component Rieske dioxygenase, Biochemistry 41, 9611-9626.
-
(2002)
Biochemistry
, vol.41
, pp. 9611-9626
-
-
Wolfe, M.D.1
Altier, D.J.2
Stubna, A.3
Popescu, C.V.4
Münck, E.5
Lipscomb, J.D.6
-
26
-
-
0023002388
-
Evidence for a redox-linked ionizable group associated with the [2Fe-2S] cluster of Thermus Rieske protein
-
Kuila, D., and Fee, J. A. (1986) Evidence for a redox-linked ionizable group associated with the [2Fe-2S] cluster of Thermus Rieske protein, J. Biol. Chem. 261, 2768-2771.
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 2768-2771
-
-
Kuila, D.1
Fee, J.A.2
-
27
-
-
0027093793
-
Phthalate dioxygenase reductase: A modular structure for electron transfer from pyridine nucleotides to [2Fe-2S]
-
Correll, C. C., Batie, C. J., Ballou, D. P., and Ludwig, M. L. (1992) Phthalate dioxygenase reductase: a modular structure for electron transfer from pyridine nucleotides to [2Fe-2S], Science 258, 1604-1610.
-
(1992)
Science
, vol.258
, pp. 1604-1610
-
-
Correll, C.C.1
Batie, C.J.2
Ballou, D.P.3
Ludwig, M.L.4
-
28
-
-
0028790887
-
The 2Fe2S centres of the 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida 86 studied by EPR spectroscopy
-
Rosche, B., Fetzner, S., Lingens, F., Nitschke, W., and Riedel, A. (1995) The 2Fe2S centres of the 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida 86 studied by EPR spectroscopy, Biochim. Biophys. Acta 1252, 177-179.
-
(1995)
Biochim. Biophys. Acta
, vol.1252
, pp. 177-179
-
-
Rosche, B.1
Fetzner, S.2
Lingens, F.3
Nitschke, W.4
Riedel, A.5
-
29
-
-
0029590773
-
EPR, electron spinecho envelope modulation, and electron nuclear double resonance studies of the 2Fe2S centers of the 2-halobenzoate 1,2-dioxygenase from Burkholderia (Pseudomonas) cepacia 2CBS
-
Riedel, A., Fetzner, S., Rampp, M., Lingens, F., Liebl, U., Zimmermann, J. L., and Nitschke, W. (1995) EPR, electron spinecho envelope modulation, and electron nuclear double resonance studies of the 2Fe2S centers of the 2-halobenzoate 1,2-dioxygenase from Burkholderia (Pseudomonas) cepacia 2CBS, J. Biol. Chem. 270, 30869-30873.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 30869-30873
-
-
Riedel, A.1
Fetzner, S.2
Rampp, M.3
Lingens, F.4
Liebl, U.5
Zimmermann, J.L.6
Nitschke, W.7
-
30
-
-
0442331120
-
-
(Sykes, A. G., and Cammack, R., Eds.), Academic Press, New York
-
Link, T. A. (1999) in Advances in Inorganic Chemistry (Sykes, A. G., and Cammack, R., Eds.) pp 83-157, Academic Press, New York.
-
(1999)
Advances in Inorganic Chemistry
, pp. 83-157
-
-
Link, T.A.1
-
31
-
-
0035840956
-
Complete thermodynamic characterization of reduction and protonation of the bc(1)-type Rieske [2Fe-2S] center of Thermus thermophilus
-
Zu, Y., Fee, J. A., and Hirst, J. (2001) Complete thermodynamic characterization of reduction and protonation of the bc(1)-type Rieske [2Fe-2S] center of Thermus thermophilus, J. Am. Chem. Soc. 123, 9906-9907.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 9906-9907
-
-
Zu, Y.1
Fee, J.A.2
Hirst, J.3
-
32
-
-
0035910409
-
2 activation by the oxygenase component of naphthalene 1,2-dioxygenase
-
2 activation by the oxygenase component of naphthalene 1,2-dioxygenase, J. Biol. Chem. 276, 1945-1953.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 1945-1953
-
-
Wolfe, M.D.1
Parales, J.V.2
Gibson, D.T.3
Lipscomb, J.D.4
-
33
-
-
0034651139
-
The reduction of the Rieske iron-sulfur cluster in naphthalene dioxygenase by X-rays
-
Karlsson, A., Parales, J. V., Parales, R. E., Gibson, D. T., Eklund, H., and Ramaswamy, S. (2000) The reduction of the Rieske iron-sulfur cluster in naphthalene dioxygenase by X-rays, J. Inorg. Biochem. 78, 83-87.
-
(2000)
J. Inorg. Biochem.
, vol.78
, pp. 83-87
-
-
Karlsson, A.1
Parales, J.V.2
Parales, R.E.3
Gibson, D.T.4
Eklund, H.5
Ramaswamy, S.6
-
34
-
-
0032900895
-
Benzene-induced uncoupling of naphthalene dioxygenase activity and enzyme inactivation by production of hydrogen peroxide
-
Lee, K. (1999) Benzene-induced uncoupling of naphthalene dioxygenase activity and enzyme inactivation by production of hydrogen peroxide, J. Bacteriol. 181, 2719-2725.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 2719-2725
-
-
Lee, K.1
-
35
-
-
0033807904
-
Substrate and solvent isotope effects on the fate of the active oxygen species in substrate-modulated reactions of putidamonooxin
-
Twilfer, H., Sandfort, G., and Bernhardt, F. H. (2000) Substrate and solvent isotope effects on the fate of the active oxygen species in substrate-modulated reactions of putidamonooxin, Eur. J. Biochem. 267. 5926-5934.
-
(2000)
Eur. J. Biochem.
, vol.267
, pp. 5926-5934
-
-
Twilfer, H.1
Sandfort, G.2
Bernhardt, F.H.3
-
36
-
-
0036301192
-
X-ray crystal structure of benzoate 1,2-dioxygenase reductase from Acinetobacter sp. strain ADP1
-
Karlsson, A., Beharry, Z. M., Eby, D. M., Coulter, E. D., Neidle, E. L., Kurtz, D. M., Jr., Eklund, H., and Ramaswamy, S. (2002) X-ray crystal structure of benzoate 1,2-dioxygenase reductase from Acinetobacter sp. strain ADP1, J. Mol. Biol. 318, 261-272.
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 261-272
-
-
Karlsson, A.1
Beharry, Z.M.2
Eby, D.M.3
Coulter, E.D.4
Neidle, E.L.5
Kurtz Jr., D.M.6
Eklund, H.7
Ramaswamy, S.8
-
37
-
-
0037428401
-
Hydrogen peroxide-coupled cis-diol formation catalyzed by naphthalene 1,2-dioxygenase
-
Wolfe, M. D., and Lipscomb, J. D. (2003) Hydrogen peroxide-coupled cis-diol formation catalyzed by naphthalene 1,2-dioxygenase, J. Biol. Chem. 278. 829-835.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 829-835
-
-
Wolfe, M.D.1
Lipscomb, J.D.2
-
38
-
-
0038581752
-
2H-ENDOR spectroscopy
-
2H-ENDOR spectroscopy, J. Am. Chem. Soc. 125, 7056-7066.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 7056-7066
-
-
Yang, T.C.1
Wolfe, M.D.2
Neibergall, M.B.3
Mekmouche, Y.4
Lipscomb, J.D.5
Hoffman, B.M.6
-
39
-
-
0037467148
-
Modulation of substrate binding to naphthalene 1,2-dioxygenase by Rieske cluster reduction/oxidation
-
Yang, T. C., Wolfe, M. D., Neibergall, M. B., Mekmouche, Y., Lipscomb, J. D., and Hoffman, B. M. (2003) Modulation of substrate binding to naphthalene 1,2-dioxygenase by Rieske cluster reduction/oxidation, J. Am. Chem. Soc. 125, 2034-2035.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 2034-2035
-
-
Yang, T.C.1
Wolfe, M.D.2
Neibergall, M.B.3
Mekmouche, Y.4
Lipscomb, J.D.5
Hoffman, B.M.6
-
40
-
-
0036891683
-
Redox-dependent structural changes in archaeal and bacterial Rieske-type [2Fe-2S] clusters
-
Cosper, N. J., Eby, D. M., Kounosu, A., Kurosawa, N., Neidle, E. L., Kurtz, D. M., Jr., Iwasaki, T., and Scott, R. A. (2002) Redox-dependent structural changes in archaeal and bacterial Rieske-type [2Fe-2S] clusters, Protein Sci. 11, 2969-2973.
-
(2002)
Protein Sci.
, vol.11
, pp. 2969-2973
-
-
Cosper, N.J.1
Eby, D.M.2
Kounosu, A.3
Kurosawa, N.4
Neidle, E.L.5
Kurtz Jr., D.M.6
Iwasaki, T.7
Scott, R.A.8
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