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Volumn 13, Issue 4, 2003, Pages 1167-1174

An adjustable aperiodic model class of genomic interactions using continuous time Boolean networks (Boolean delay equations)

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EID: 0344719142     PISSN: 10541500     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.1608671     Document Type: Article
Times cited : (28)

References (41)
  • 1
    • 0032616683 scopus 로고    scopus 로고
    • Identification of genetic networks from a small number of gene expression patterns under the Boolean network model
    • Hawaii, 4-9 January
    • T. Akutsu and S. Miyano, "Identification of genetic networks from a small number of gene expression patterns under the Boolean network model," Proceedings of the Pacific Symposium on Biocomputing'99 (PSB'99), Hawaii, 4-9 January 1999.
    • (1999) Proceedings of the Pacific Symposium on Biocomputing'99 (PSB'99)
    • Akutsu, T.1    Miyano, S.2
  • 5
    • 0033985570 scopus 로고    scopus 로고
    • Kinetic analysis of a molecular model of the budding yeast cell cycle
    • K. C. Chen et al., "Kinetic analysis of a molecular model of the budding yeast cell cycle," Mol. Biol. Cell 11, 369-391 (2000).
    • (2000) Mol. Biol. Cell , vol.11 , pp. 369-391
    • Chen, K.C.1
  • 8
    • 17944372930 scopus 로고    scopus 로고
    • Serial regulation of transcriptional regulators in the yeast cell cycle
    • I. Simon et al., "Serial regulation of transcriptional regulators in the yeast cell cycle," Cell 106, 697-708 (2001).
    • (2001) Cell , vol.106 , pp. 697-708
    • Simon, I.1
  • 10
    • 0021375732 scopus 로고
    • Boolean difference equations, i: Formulation and Dynamic behavior
    • D. Dee and M. Ghil, "Boolean difference equations, i: Formulation and Dynamic behavior," SIAM (Soc. Ind. Appl. Math.) J. Appl. Math. 44, 111-126 (1984).
    • (1984) SIAM (Soc. Ind. Appl. Math.) J. Appl. Math. , vol.44 , pp. 111-126
    • Dee, D.1    Ghil, M.2
  • 11
    • 54249116230 scopus 로고
    • Genetic regulatory mechanisms in the synthesis of proteins
    • F. Jacob and J. Monod, "Genetic regulatory mechanisms in the synthesis of proteins," J. Mol. Biol. 3, 318-356 (1961).
    • (1961) J. Mol. Biol. , vol.3 , pp. 318-356
    • Jacob, F.1    Monod, J.2
  • 12
    • 0013768153 scopus 로고
    • Functional analysis of chemical systems in vivo using a logical equivalent, II: The idea of a molecular automaton
    • J. Sugita, "Functional analysis of chemical systems in vivo using a logical equivalent, II: The idea of a molecular automaton," J. Theor. Biol. 4, 179-192 (1963).
    • (1963) J. Theor. Biol. , vol.4 , pp. 179-192
    • Sugita, J.1
  • 13
    • 0014489272 scopus 로고
    • Metabolic stability and epigenesis in randomly constructed genetic nets
    • S. A. Kauffman, "Metabolic stability and epigenesis in randomly constructed genetic nets," J. Theor. Biol. 22, 437-467 (1969).
    • (1969) J. Theor. Biol. , vol.22 , pp. 437-467
    • Kauffman, S.A.1
  • 14
    • 0015823097 scopus 로고
    • Boolean formalization of genetic control circuits
    • R. Thomas, "Boolean formalization of genetic control circuits, " J. Theor. Biol. 42, 563-585 (1973).
    • (1973) J. Theor. Biol. , vol.42 , pp. 563-585
    • Thomas, R.1
  • 15
    • 0018080896 scopus 로고
    • Logical analysis of systems comprising feedback loops
    • R. Thomas, "Logical analysis of systems comprising feedback loops," J. Theor. Biol. 73, 631-656 (1978).
    • (1978) J. Theor. Biol. , vol.73 , pp. 631-656
    • Thomas, R.1
  • 16
    • 0031800433 scopus 로고    scopus 로고
    • Laws for the dynamics of regulatory networks
    • R. Thomas, "Laws for the dynamics of regulatory networks," Int. J. Dev. Biol. 42, 479-485 (1998).
    • (1998) Int. J. Dev. Biol. , vol.42 , pp. 479-485
    • Thomas, R.1
  • 17
    • 0007712725 scopus 로고    scopus 로고
    • Multistationarity, the basis of cell differentiation and memory. I. Structural conditions of multistationarity and other nontrivial behavior
    • R. Thomas and M. Kauffman, "Multistationarity, the basis of cell differentiation and memory. I. Structural conditions of multistationarity and other nontrivial behavior," Chaos 11, 170-179 (2001).
    • (2001) Chaos , vol.11 , pp. 170-179
    • Thomas, R.1    Kauffman, M.2
  • 18
    • 0035582202 scopus 로고    scopus 로고
    • Multistationarity, the basis of cell differentiation and memory. II. Logical analysis of regulatory networks in terms of feedback circuits
    • R. Thomas and M. Kauffman, "Multistationarity, the basis of cell differentiation and memory. II. Logical analysis of regulatory networks in terms of feedback circuits," Chaos 11, 180-195 (2001).
    • (2001) Chaos , vol.11 , pp. 180-195
    • Thomas, R.1    Kauffman, M.2
  • 23
    • 0036184629 scopus 로고    scopus 로고
    • Probabilistic Boolean networks: A rule-based uncertainty model for gene regulatory networks
    • I. Shmulevich, E. R. Dougherty, S. Kim, and W. Zhang, "Probabilistic Boolean networks: A rule-based uncertainty model for gene regulatory networks," Bioinformatics 18, 261-274 (2002).
    • (2002) Bioinformatics , vol.18 , pp. 261-274
    • Shmulevich, I.1    Dougherty, E.R.2    Kim, S.3    Zhang, W.4
  • 24
    • 0344611758 scopus 로고    scopus 로고
    • Temporal Boolean network models of genetic networks and their inference from gene expression time series
    • A. Silvescu and V. Honavar, "Temporal Boolean network models of genetic networks and their inference from gene expression time series," Complex Syst. 13, 54-75 (1997).
    • (1997) Complex Syst. , vol.13 , pp. 54-75
    • Silvescu, A.1    Honavar, V.2
  • 25
    • 0034404253 scopus 로고    scopus 로고
    • Combinatorial explosion in model gene networks
    • R. Edwards and L. Glass, "Combinatorial explosion in model gene networks," Chaos 10, 691-704 (2000).
    • (2000) Chaos , vol.10 , pp. 691-704
    • Edwards, R.1    Glass, L.2
  • 26
    • 0013387906 scopus 로고    scopus 로고
    • Symbolic dynamics and computation in model gene networks
    • R. Edwards, H. T. Siegelmann, K. Aziza, and L. Glass, "Symbolic dynamics and computation in model gene networks," Chaos 11, 160-169 (2001).
    • (2001) Chaos , vol.11 , pp. 160-169
    • Edwards, R.1    Siegelmann, H.T.2    Aziza, K.3    Glass, L.4
  • 28
    • 0035576779 scopus 로고    scopus 로고
    • A Boolean delay equations model of ENSO variability
    • A. Saunders and M. Ghil, "A Boolean delay equations model of ENSO variability," Physica D 160, 54-78 (2001).
    • (2001) Physica D , vol.160 , pp. 54-78
    • Saunders, A.1    Ghil, M.2
  • 29
    • 0037234109 scopus 로고    scopus 로고
    • A Boolean delay equation model of colliding cascades. II: Prediction of critical transitions
    • I. Zaliapin, V. Keilis-Borok, and M. Ghil, "A Boolean delay equation model of colliding cascades. II: Prediction of critical transitions," J. Stat. Phys. 111, 839-861 (2003).
    • (2003) J. Stat. Phys. , vol.111 , pp. 839-861
    • Zaliapin, I.1    Keilis-Borok, V.2    Ghil, M.3
  • 32
    • 0001335184 scopus 로고    scopus 로고
    • Adams-multibody system analysis software
    • edited by W. Schiehlen
    • R. Ryan, "Adams-multibody system analysis software," in Multibody Systems Handbook, edited by W. Schiehlen, pp. 361-402.
    • Multibody Systems Handbook , pp. 361-402
    • Ryan, R.1
  • 34
    • 0037289921 scopus 로고    scopus 로고
    • Selecting nonlinear model structures for computer control
    • R. Pearson, "Selecting nonlinear model structures for computer control," J. Process Control 13, 1-26 (2003).
    • (2003) J. Process Control , vol.13 , pp. 1-26
    • Pearson, R.1
  • 36
    • 84958240798 scopus 로고    scopus 로고
    • Ref. 6
    • S. Elaydi, An Introduction to Difference Equations (Springer-Verlag, Berlin, 1996); "Regulatory network models," in Ref. 6.
    • Regulatory Network Models
  • 37
    • 0031212297 scopus 로고    scopus 로고
    • Numerical investigation of the pantograph equation
    • Y. Liu, "Numerical investigation of the pantograph equation," Appl. Numer. Math. 24, 309-317 (1997).
    • (1997) Appl. Numer. Math. , vol.24 , pp. 309-317
    • Liu, Y.1
  • 38
    • 0015296342 scopus 로고
    • Cooperative components, spatial localization and oscillatory cellular dynamics
    • L. Glass and S. A. Kauffman, "Cooperative components, spatial localization and oscillatory cellular dynamics," J. Theor. Biol. 34, 219-237 (1972).
    • (1972) J. Theor. Biol. , vol.34 , pp. 219-237
    • Glass, L.1    Kauffman, S.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.