Amino acid sequence and tertiary structure of Cratylia mollis seed lectin

Glycobiology

Volumn 13, Issue 12, 2003, Pages 961-972

  de Souza, Gustavo A ^a   Oliveira, Paulo S L ^a   Trapani, Stefano ^a   Santos, Ana Célia O ^b   Rosa, José C ^a   Laure, Helen J ^a   Faça, Vitor M ^a   Correia, Maria T S ^c   Tavares, Gisele A ^a   Oliva, Glaucius ^a   Coelho, Luana C B B ^c   Greene, Lewis J ^a  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b FEDERAL UNIVERSITY OF PERNAMBUCO   (Brazil)

^c FEDERAL UNIVERSITY OF PERNAMBUCO   (Brazil)

Author keywords

Amino acid sequence; Cratylia mollis; Crystallography; Lectin; Methyl D mannoside

Indexed keywords

CARBOHYDRATE; CONCANAVALIN A; GLYCOPROTEIN; MONOSACCHARIDE; OLIGOSACCHARIDE; PLANT LECTIN;

AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; CONTROLLED STUDY; DEGRADATION; LEGUME; PLANT SEED; PRIORITY JOURNAL; PROTEIN INTERACTION; PROTEIN TERTIARY STRUCTURE; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; BINDING SITES; CARBOHYDRATES; CONCANAVALIN A; CRYSTALLOGRAPHY, X-RAY; FABACEAE; HYDROGEN BONDING; LECTINS; METALS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; SEEDS; SEQUENCE HOMOLOGY, AMINO ACID; SUBSTRATE SPECIFICITY;

CRATYLIA MOLLIS;

EID: 0344668717     PISSN: 09596658     EISSN: None     Source Type: Journal    
DOI: 10.1093/glycob/cwg115     Document Type: Article

References (47)

1. Beltrão, E.I.C., Correia, M.T.S., Silva, J.F., and Coelho, L.C.B.B. (1998) Binding evaluation of Isoform 1 from Cratylia mollis lectin to human mammary tissues. Appl. Biochem. Biotechnol., 74, 125-134.
2. Bidlingmeyer, B.A., Cohen, S.A., and Tarvin, T.L. (1984) Rapid analysis of amino acids using pre-column derivatization. J. Chromatogr., 336, 93-104.
3. Bouckaert, J., Poortmans, F., Wyns, L., and Loris, R. (1996) Sequential structural changes upon zinc and calcium binding to metal-free concanavalin A. J. Biol. Chem., 271, 16144-16150.
4. Bowles, D.J., Marcus, S.E., Pappin, D.J.C., Findlay, J.B.C., Eliopoulos, E., Maycox, P.R., and Burgess, J. (1986) Posttranslational processing of concanavalin A in jackbean cotyledons. J. Cell Biol., 102, 1284-1297.
5. Brünger, A.T. (1992) X-PLOR: a system for X-ray crystallography and nuclear magnetic resonance. Yale University Press, New Haven, CT.
6. Carrington, D.M., Auffret, A., and Hanke, D.E. (1985) Polypeptide ligation occurs during post-translational modification of concanavalin A. Nature, 313, 64-67.
7. Cavada, B.S., Nogueira, N.A.P., Farias, C.M.A.S., Grangeiro, T.B., Romas, M.V., Thole, H.H., Raida, M., Rouge, P., and Calvete, J.J. (1999) Primary structure and kinetic interaction with glycoproteins of the lectin from seeds of Cratylia floribunda. Protein Pept. Lett., 6, 27-34.
8. Collaborative Computational Project, Number 4 (1994) The CCP4 suite: programs for protein crystallography. Acta Cryst. D, 50, 760-763.
9. Correia, M.T.S. and Coelho, L.C.B.B. (1995) Purification of a glucose/mannose specific lectin, Isoform 1, from seeds of Cratilya mollis Mart. (Camaratu bean). Appl. Biochem. Biotechnol., 55, 261-273.
10. Cunningham, B.A., Wang, J.L., Waxdal, M.J., and Edelman, G.M. (1975) The covalent and three-dimensional structure of concanavalin A. II. Amino acid sequence of cyanogen bromide fragment F3. J. Biol. Chem., 250, 1503-1512.
11. Dam, T.K., Cavada, B.S., Grangeiro, T.B., Santos, C.F., Sousa, F.A.M., Oscarson, S., and Brewer, C.F. (1998) Diocleinae lectins are a group of proteins with conserved binding site for the core trimannoside of asparagine-linked oligosaccharides and differential specificities for complex carbohydrates. J. Biol. Chem., 272, 12082-12088.
12. Derewenda, Z., Yariv, J., Helliwell, J.R., Kalb, A.J., Dodson, E.J., Papiz, M.Z., Wan, T., and Campbell, J. (1989) The structure of the saccharide-binding site of concanavalin A. EMBO J., 8, 2189-2193.
13. Edman, P. (1950) Method of amino acid sequences in peptides. Acta Chem. Scand., 4, 283-293.
14. Fujimura, S., Terada, S., Jayavardhanan, K.K., Pannikar, K.R., and Kimoto, E. (1993) Primary structure of concanavalin A-like lectins from seeds of two species of Canavalia. Phytochem., 33, 985-987.
15. Gupta, D., Oscarson, S., Raju, T.S., Stanley, P., Toone, E.J., and Brewer, C.F. (1996) A comparison of the fine saccharide-binding specificity of Dioclea grandiflora lectin and concanavalin A. Eur. J. Biochem., 242, 320-326.
16. Hardman, K.D., Agarwal, R.C., and Freiser, M.J. (1982) Manganese and calcium-binding sites of concanavalin A. J. Mol. Biol., 157, 69-86.
17. Jones, T.A., Zou, J.Y., Cowan, S.W., and Kjeldgaard, M., (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Cryst. A, 47, 110-119.
18. Lamzin, V.S. and Wilson, K.S. (1997) Automated refinement for protein crystallography. Meth. Enzymol., 277, 269-305.
19. Laskowski, R.A., MacArthur, M.W., Moss, D.S., and Thornton, J.M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Cryst., 26, 283-291.
20. Lee, B. and Richards, F.M. (1971) Interpretation of protein structures - estimation of static accessibility. J. Mol. Biol., 55, 379-400.
21. Lima, V.L.M., Correia, M.T.S., Cechinel, Y.M.N., Sampaio, C.A.M., Owen, J.S., and Coelho, L.C.B.B. (1997) Immobilized Cratylia mollis lectin as a potential matrix to isolate plasma glycoproteins, including lecithin-cholesterol acyltransferase. Carbohyd. Polymers, 31, 27-32.
22. Loris, R., Hamelryck, T., Bouckaert, J., and Wyns, L. (1998) Legume lectin structure. Biochim. Biophys. Acta, 1383, 9-36.
23. Manoj, N. and Suguna, K. (2001) Signature of quaternary structure in the sequences of legume lectins. Prot. Eng., 14, 735-745.
24. Moothoo, D.N. and Naismith, J.H. (1998) Concanavalin A distorts the β-GlcNAc-(1 → 2)-Man linkage of β-GlcNAc-(1 → 2)-α-Man-(1 → 3)-[β-GlcNAc-(1 → 2 -α-Man-(1 → 6)]-Man upon binding. Glycobiology, 8, 173-181.
25. Murshudov, G., Vagin, A., and Dodson E. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Cryst. D, 53, 240-255.
26. Naismith, J.H. and Field, R.A. (1996) Structural basis of trimannoside recognition by concanavalin A. J. Biol. Chem., 271, 972-976.
27. Naismith, J.H., Emmerich, C., Habash, J., Harrop, S.J., Helliwell, J.R., Hunter, W.N., Raftery, J., Kalb (Gilboa), A.J., and Yariv, J. (1994) Refined structure of concanavalin A complexed with methyl α-D-mannopyranoside at 2.0 Å resolution and comparison with the saccharide-free structure. Acta Cryst. D, 50, 847-858.
28. Navaza, J. (1994) AMoRe: an automated package for molecular replacement. Acta Cryst. A, 50, 157-163.
29. Noreau, J. and Drapeau, G.R. (1979) Isolation and properties of the protease from the wild-type and mutant strains of Pseudomonas fragi. J. Bacteriol., 140, 911-916.
30. Otwinowski, Z. and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Meth. Enzymol., 276, 307-326.
31. Perez, G., Perez, C., Sousa-Cavada, B., Moreira, R., and Richardson, M. (1991) Comparison of the amino acid sequences of the lectins from seeds of Dioclea lehmannii and Canavalia maritima. Phytochem., 30, 261-262.
32. Polikarpov, I., Perles, L.A., de Oliveira, R.T., Oliva, G., Castellano, E.E., Garratt, R.C., and Craievich, A. (1998) Set-up and experimental parameters of the protein crystallography beamline at the Brazilian National Synchrotron Laboratory. J. Synch. Rad, 5, 72-76.
33. Prabu, M.M., Suguna, K., and Vijayan, M. (1999) Variability in quaternary association of proteins with the same tertiary fold: a case study and rationalization involving legume lectins. Prot. Struc. Func. Genet., 35, 58-69.
34. Richardson, M., Campos, F.D., Moreira, R.A., Ainouz, I.L., Begbie, R., Watt, W.B., and Pusztai, A. (1984) The complete amino acid sequence of the major alpha subunit of the lectin from the seeds of Dioclea grandiflora (Mart.). Eur. J. Biochem., 144, 101-111.
35. Rini, J.M. (1995) Lectin structure. Ann. Rev. Biophys. Biomol. Struc., 24, 551-577.
36. Rosa, J.C., Oliveira, P.S.L., Garratt, R., Beltramini, L., Resing, K., Roque-Barreira, M.C., and Greene L.J. (1999) KM+, a mannose-binding lectin from Artocarpus integrifolia: Amino acid sequence, predicted tertiary structure, carbohydrate recognition, and analysis of the β-prism fold. Protein Sci., 8, 13-24.
37. Rozwarski, D.A., Swami, B.M., Brewer, C.F., and Sacchettini, J.C. (1998) Crystal structure of the lectin from Dioclea grandiflora complexed with core trimannoside of asparagines-linked carbohydrates. J. Biol. Chem., 273, 32818-32825.
38. Sanz-Aparicio, J., Hermoso, J., Grangeiro, T.B., Calvete, J.J., and Cavada, B.S. (1997) The crystal structure of Canavalia brasiliensis lectin suggests a correlation between its quaternary conformation and its distinct biological properties from Concanavalin A. FEBS Lett., 1997, 114-118.
39. Sharon, N. and Lis, H. (1990) Legume lectins - a large family of homologous proteins. FASEB J., 4, 3198-3208.
40. Sharon, N. and Lis, H. (1993) Carbohydrates in cell recognition. Sci. Am., 268, 82-88.
41. Sharon, N. and Lis, H. (1995) Lectins-proteins with a sweet tooth: functions in cell recognition. Essays Biochem., 30, 59-75.
42. Srinivas, V.R., Reddy, G.B., Ahmad, N., Swaminathan, C.P., Mitra, N., and Surolia, A. (2001) Legume lectin family, the "natural mutants of the quaternary state", provide insights into the relationship between protein stability and oligomerization. Biochim. Biophys. Acta, 1527, 102-111.
43. Tavares, G.A., Caracelli, I., Burger, R., Correia, M.T.S., Coelho, L.C.B.B., and Oliva G. (1996) Crystallization and preliminary X-ray studies on the lectin from the seeds of Cratylia mollis. Acta Cryst. D, 52, 1046-1047.
44. Vriend, G. and Sander, C. (1993) Quality-control of protein models - directional atomic contact analysis. J. Appl. Cryst., 26, 47-60.
45. Wah, D.A., Romero, A., Gallego del Sol, F., Cavada, B.S., Ramos, M.V., Grangeiro, T.B., Sampaio, A.H., and Calvete, J.J. (2001) Crystalstructure of native and Cd/Cd-substituted Dioclea guianensis seed lectin. A novel manganese-binding site and structural basis of dimertetramer association. J. Mol. Biol., 310, 885-894.
46. Wang, J.L., Cunningham, B.A., Waxdal, M.J., and Edelman, G.M. (1975) The covalent and three-dimensional structure of concanavalin A. I. Amino acid sequence of cyanogen bromide fragments F1 and F2. J. Biol. Chem., 250, 1490-1502.
47. Weis, W.I. and Drickamer, K. (1996) Structural basis of lectin-carbohydrate recognition. Annu. Rev. Biochem., 65, 441-473.