Microbial reduction of Fe(III) in acidic sediments: Isolation of Acidiphilium cryptum JF-5 capable of coupling the reduction of fe(III) to the oxidation of glucose

Applied and Environmental Microbiology

Volumn 65, Issue 8, 1999, Pages 3633-3640

  Küsel, Kirsten ^a   Dorsch, Tanja ^a   Acker, Georg ^a   Stackebrandt, Erko ^b  

^a UNIVERSITY OF BAYREUTH   (Germany)

^b LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

4',6 DIAMIDINO 2 PHENYLINDOLE; ACETIC ACID; ALCOHOL; CELLOBIOSE; CITRIC ACID; FERRIC ION; FRUCTOSE; FUMARIC ACID; GLUCOSE; GLUTAMIC ACID; GLYCEROL; HYDROGEN; LACTIC ACID; MALIC ACID; RIBOSOME RNA; SUCCINIC ACID; XYLOSE;

ACIDIPHILIUM; ACIDITY; ARTICLE; BACTERIUM ISOLATE; BACTERIUM ISOLATION; GENE SEQUENCE; GLUCOSE OXIDATION; NONHUMAN; NUCLEOTIDE SEQUENCE; REDUCTION; SEDIMENT; SEQUENCE ANALYSIS;

ACIDIPHILIUM CRYPTUM;

EID: 0344603826     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.65.8.3633-3640.1999     Document Type: Article

References (50)

1. Alef, K. 1991. Methodenhandbuch Bodenmikrobiologie: Aktivitäten, Biomasse, Differenzierung, p. 44-49. Ecomed, Landsberg/Lech, Germany.
2. Arnold, R. G., M. R. Hoffmann, T. J. DiChristina, and F. W. Picardal. 1990. Regulation of dissimilatoty Fe(III) reduction activity in Shewanella putrefaciens. Appl. Environ. Microbiol. 56:2811-2817.
3. Bigham, J. M., L. Carlson, and E. Murad. 1994. Schwertmannite, a new iron oxyhydroxysulphate from Pyhäsalmi, Finland, and other localities. Mineralogical Magazine 58:641-648.
4. Bigham, J. M., V. Schwertmann, and G. Pfab. 1996. Influence of pH on mineral speciation in a bioreactor simulating acid mine drainage. Appl. Geochem. 11:845-849.
5. Bigham, J. M., U. Schwertmann, L. Carlson, and E. Murad. 1990. A poorly crystallized oxyhydroxysulfate of iron formed by bacterial oxidation of Fe(II) in acid mine waters. Geochim. Cosmochim. Acta 54:2743-2758.
6. Blodau, C., S. Hoffmann, A. Peine, and S. Peiffer. 1998. Iron and sulfate reduction in the sediments of acidic mine lake 116 (Brandenburg, Germany): rates and geochemical evaluation. Water Air Soil Pollut. 108:249-270.
7. Bott, T. L., and L. A. Kaplan. 1985. Bacterial biomass, metabolic state, and activity in stream sediments, in relation to environmental variables and multiple assay comparisons. Appl. Environ. Microbiol. 50:508-522.
8. Brock, T. D., and J. Gustafson. 1976. Ferric iron reduction by sulfur- and iron-oxidizing bacteria. Appl. Environ. Microbiol. 32:567-571.
9. Caccavo, F., Jr., D. J. Lonergan, D. R. Lovlev, M. Davis, J. F. Stolz, and M. J. McInerney. 1994. Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism. Appl. Environ. Microbiol. 60:3752-3759.
10. Canfield, D. E., B. Thamdrup, and J. E. Hansen. 1993. The anaerobic degradation of organic matter in Danish coastal sediments: iron reduction, manganese reduction, and sulfate reduction. Geochim. Cosmochim. Acta 57: 3867-3883.
11. Cashion, P., M. A. Holder-Franklin, J. McCully, and M. Franklin. 1977. A rapid method for the base ratio determination of bacterial DNA. Anal. Biochem. 81:461-466.
12. Coates, J. D., E. J. P. Phillips, D. J. Lonergan, H. Jenter, and D. R. Lovley. 1996. Isolation of Geobacter species from diverse sedimentary environments. Appl. Environ. Microbiol. 62:1531-1536.
13. Drake, H. L. 1994. Acetogenesis, acetogenic bacteria, and the acetyl-CoA "Wood/Ljungdahl" pathway: past and current perspectives, p. 3-60. In H. L. Drake (ed.), Acetogenesis. Chapman and Hall, Inc., New York, N.Y.
14. Drobner, E., H. Huber, and K. O. Stetter. 1990. Thiobacillus ferrooxidans, a facultative hydrogen oxidizer. Appl. Environ. Microbiol. 56:2922-2923.
15. Fortin, D., B. Davis, and T. J. Beveridge. 1996. Role of Thiobacillus and sulfate-reducing bacteria in iron biocycling in oxic and acidic mine tailings. FEMS Microbiol. Ecol. 21:11-24.
16. Friese, K., K. Wendt-Potthoff, D. W. Zachmann, A. Fauville, B. Mayer, and J. Veizer. 1998. Biogeochemistry of iron and sulfur in sediments of an acidic mining lake in Lusatia, Germany. Water Air Soil Pollut. 108:231-247.
17. Goebel, B. M., and E. Stackebrandt. 1994. Cultural and phylogenetic analysis of mixed microbial populations found in natural and commercial bioleaching environments. Appl. Environ. Microbiol. 60:1614-1621.
18. 3 by saccharolytic clostridia and Bacillus polymyxa under anaerobic conditions. Z. Pflanzenernaehr. Bodenkd. 137:108-115.
19. Harrison, A. P., Jr. 1981. Acidiphilium cryptum gen. nov., sp. nov., heterotrophic bacterium from acidic mineral environments. Int. J. Syst. Bacteriol. 31:327-332.
20. Herlihy, A. T., and A. L. Mills. 1985. Sulfate reduction in freshwater sediments receiving acid mine drainage. Appl. Environ. Microbiol. 49:179-186.
21. Johnson, D. B. 1995. Mineral cycling by microorganisms: iron bacteria, p. 137-159. In D. Allsopp, R. R. Colwell, and D. L. Hawksworth (ed.), Microbial diversity and ecosystem function. CAB International, University Press, Cambridge, United Kingdom.
22. Johnson, D. B. 1998. Biodiversity and ecology of acidophilic microorganisms. FEMS Microbiol. Ecol. 27:307-317.
23. Johnson, D. B., and S. McGinness. 1991. Fe(III) reduction by acidophilic heterotrophic bacteria. Appl. Environ. Microbiol. 57:207-211.
24. Johnson, D. B., M. A. Ghauri, and S. McGinness. 1993. Biogeochemical cycling of iron and sulphur in leaching environments. FEMS Microbiol. Rev. 11:63-70.
25. Kishimoto, N., Y. Kosako, N. Wakao, T. Tano, and A. Hiraishi. 1995. Transfer of Acidiphilium facilis and Acidiphilium aminolytica to the genus Acidocella gen. nov., and emendation of the genus Acidiphilium. Syst. Appl. Microbiol. 18:85-91.
26. Küsel, K., and H. L. Drake. 1995. Effects of environmental parameters on the formation and turnover of acetate by forest soils. Appl. Environ. Microbiol. 61:3667-3675.
27. Lovley, D. R. 1991. Dissimilatory Fe(III) and Mn(IV) reduction. Microbiol. Rev. 55:259-287.
28. Lovley, D. R. 1993. Dissimilatory metal reduction. Annu. Rev. Microbiol. 47:263-290.
29. Lovley, D. R., and E. J. P. Phillips. 1986. Availability of Fe(III) for microbial reduction in bottom sediments of the freshwater tidal Potomac River. Appl. Environ. Microbiol. 52:751-757.
30. Lovley, D. R., and E. J. P. Phillips. 1986. Organic matter mineralization with reduction of Fe(III) in anaerobic sediments. Appl. Environ. Microbiol. 51: 683-689.
31. Lovley, D. R., and E. J. P. Phillips. 1988. Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron or manganese. Appl. Environ. Microbiol. 54:1472-1480.
32. Lovley, D. R., and E. J. P. Phillips. 1989. Requirement for a microbial consortium to completely oxidize glucose in Fe(III)-reduring sediments. Appl. Environ. Microbiol. 55:3234-3236.
33. Maidak, B. L., G. J. Olsen, N. Larsen, R. Overbeek, M. J. McCaughey, and C. R. Woese. 1996. The Ribosomal Database Project. Nucleic Acids Res. 24:82-85.
34. Mesbah, M., U. Premachandran, and B. Whitman. 1989. Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int. J. Syst. Bacteriol. 39:159-167.
35. Miller, G. C., W. B. Lyons, and A. Davis. 1996. Understanding the water quality of pit lakes. Environ. Sci. Technol. 30:118A-123A.
36. Munch, J. C., and J. C. G. Ottow. 1980. Preferential reduction of amorphous to crystalline iron oxides by bacterial activity. Soil Sci. 129:15-21.
37. Nealson, K. H., and C. R. Myers. 1992. Microbial reduction of manganese and iron: new approaches to carbon cycling. Appl. Environ. Microbiol. 58: 439-443.
38. Peine, A., and S. Peifer. 1998. Neutralisierungsprozesse in Sedimenten saurer Restseen des Braunkohletagebaus. Wasserkalender 33:48-72.
39. Porter, K. G., and Y. S. Feig. 1980. The use of DAPI for identifying and counting aquatic microflora. Limnol. Oceanogr. 25:943-948.
40. Pronk, J. T., and D. B. Johnson. 1992. Oxidation and reduction of iron by acidophilic bacteria. Geomicrobiol. J. 10:153-171.
41. Pronk, J. T., J. C. DeBruyn, P. Bos, and J. G. Kuenen. 1992. Anaerobic growth of Thiobacillus ferrooxidans. Appl. Environ. Microbiol. 58:2227-2230.
42. Rainey, F. A., N. Ward-Rainey, R. M. Kroppenstedt, and E. Stackebrandt. 1996. The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage; proposal for Nocardiopsaceae fam. nov. Int. J. Syst. Bacteriol. 46:1088-1092.
43. Reynolds, E. S. 1963. The use of lead citrate at high pH as an electron opaque stain in electron microscopy. J. Cell Biol. 7:208.
44. Roden, E. R., and R. G. Wetzel. 1996. Organic carbon oxidation and suppression of methane production by microbial Fe(III) oxide reduction in vegetated and unvegetated freshwater wetland sediments. Limnol. Oceanogr. 41:1733-1748.
45. Schultze, M., and W. Geller. 1996. The acid lakes of lignite mining district of the former German Democratic Republic, p. 89-105. In R. Reuther (ed.), Geochemical approaches to environmental engineering of metals. Springer-Verlag, Berlin, Germany.
46. Specka, U., A. Spreinat, G. Antranikian, and F. Mayer. 1991. Immunocytochemical identification and localization of active and inactive α-amylase and pullulanase in cells of Clostridium thermosulfurogenes EM1. Appl. Environ. Microbiol. 57:1062-1069.
47. Tamura, H., K. Goto, T. Yotsuyanagi, and M. Nagayama. 1974. Spectrophotometric determination of iron(II) with 1,10-phenanthroline in the presence of large amounts of iron(III). Talanta 21:314-318.
48. Traub, W. H., G. Acker, and I. Kleber. 1976. Ultrastruclural surface alterations of Serratia marcescens after exposure to polymyxin B and/or fresh human serum. Chemotherapy 22:104-113.
49. Tuttle, J. H., P. R. Dugan, and C. I. Randles. 1969. Microbial dissimilatory sulfur cycle in acid mine water. J. Bacteriol. 97:594-602.
50. Valentine, R. C., B. M. Shapiro, and E. R. Stadtman. 1968. Regulation of glutamine synthetase. XII. Electron microscopy of the enzyme from Escherichia coli. Biogeochemistry 7:2143-2152.