Ancient DNA analysis reveals woolly rhino evolutionary relationships

Molecular Phylogenetics and Evolution

Volumn 28, Issue 3, 2003, Pages 485-499

  Orlando, Ludovic ^a   Leonard, Jennifer A ^b   Thenot, Aurélie ^a   Laudet, Vincent ^c   Guerin, Claude ^d   Hänni, Catherine ^a  

^a CENTRE DE GÉNÉTIQUE MOLÉCULAIRE ET CELLULAIRE   (France)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITÉ DE LYON   (France)

^d UNIVERSITÉ LYON 1   (France)

Author keywords

[No Author keywords available]

Indexed keywords

COELODONTA ANTIQUITATIS; DICERORHINUS SUMATRENSIS; RHINOCEROS;

EID: 0344530866     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1055-7903(03)00023-X     Document Type: Article

References (33)

1. Arnason, U., Adegoke, J.A., Bodin, K., Born, E.W., Esa, Y.B., Gullberg, A., Nilsson, M., Short, R.V., Xu, X., Janke, A., 2002. Mammalian mitogenomic relationships and the root of the eutherian tree. Proc. Natl. Acad. Sci. USA 99, 8151-8156.
2. Cooper, A., Fortey, R., 1998. Evolutionary explosions and the phylogenetic fuse. Trends Ecol. Evol. 13, 151-155.
3. Dorst, J., Dandelot, P., 1972. Guide des grands Mammifères d'Afrique. Delachaux & Niestlé edit., Neuchâtel.
4. Douzery, E., Catzeflis, F.M., 1995. Molecular evolution of the mitochondrial 12S rRNA in Ungulata (Mammalia). J. Mol. Evol. 41, 622-636.
5. Eisenmann, V., Baylac, M., 2000. Extant and fossil Equus (Mammalia, Perissodactyla) skulls: a morphometric definition of the subgenus Equus. Zool. Scripta 29, 89-100.
6. Galtier, N., Gouy, M., Gautier, C., 1996. SEAVIEW and PHYLO_ WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci. 12, 543-548.
7. Garland, T.J., Dickerman, A.W., Janis, C.M., Jones, J.A., 1993. Phylogenetic analysis of covariance by computer simulation. Syst. Biol. 42, 265-292.
8. Greenwood, A.D., Capelli, C., Possnert, G., Pääbo, S., 1999. Nuclear DNA sequences from late Pleistocene megafauna. Mol. Biol. Evol. 16, 1466-1473.
9. Greenwood, A.-D., Lee, F., Capelli, C., De Salle, R., Tikhonov, A., Marx, P., Mac Phee, R.D., 2001. Evolution of endogenous retrovirus-like elements of the woolly mammoth (Mammuthus primigenius) and its relatives. Mol. Biol. Evol. 18, 840-847.
10. Guérin, C., 1980a. Les rhinocéros (Mammalia, Perissodactyla) du Miocène terminal au Pléistocène supérieur en Europe occidentale: comparaison avec les espèces actuelles. Docum. Lab. Géol. Lyon 79, 785-1185.
11. Guérin, C., 1980b. A propos des rhinocéros (Mammalia, Perissodactyla), néogènes et quaternaires d'Afrique: essai de synthèse sur les espéces et sur les gisements. Proc. 8th Panaf. Congress. Prehist. Quat. Stud. 58-63.
12. Guérin, C., 1989. La famille des Rhinocerotidae (Mammalia, Perissodactyla): systématique, histoire, évolution, paléoécologie. Cranium 2, 3-14.
13. Hagelberg, E., Thomas, M.G., Cook Jr., C.E., Sher, A.V., Baryshnikov, G.F., Lister, A.M., 1994. DNA from ancient mammoth bones. Nature 370, 333-334.
14. Halthenorth, T., Diller, H., 1985. Mammifères d'Afrique et de Madagascar. Delachaux & Niestlé edit., Neuchâtel.
15. Hänni, C., Laudet, V., Stéhélin, D., Taberlet, P., 1994. Tracking the origins of the cave bear (Ursus spelaeus) by mitochondrial DNA sequencing. Proc. Natl. Acad. Sci. USA 91, 12336-12340.
16. Hofreiter, M., Jaenicke, V., Serre, D., von Haeseler, A., Pääbo, S., 2001. DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Res. 29, 4793-4799.
17. Höss, M., Jaruga, P., Zastaway, T.H., Dizdaroglu, M., Pääbo, S., 1996. DNA damage and DNA sequence retrieval from ancient tissues. Proc. Natl. Acad. Sci. USA 24, 1304-1307.
18. Irwin, D.M., Kocher, T.B., Wilson, A.C., 1991. Evolution of the cytochrome b gene of mammals. J. Mol. Evol. 32, 128-144.
19. Kurten, B., 1968. Pleistocene Mammals of Europe. Weindenfeld and Nicholson, London.
20. Loreille, O., Orlando, L., Patou-Mathis, M., Philippe, M., Taberlet, P., Hänni, C., 2001. Ancient DNA analysis reveals divergence of the cave bear, Ursus spelaeus, and brown bear, Ursus arctos, lineages. Curr. Biol. 11, 200-203.
21. Montgelard, C., Catzeflis, F.M., Douzery, E., 1997. Phylogenetic relationships of artiodactyls and cetaceans as deduced from the comparison of cytochrome b and 12S rRNA mitochondrial sequences. Mol. Biol. Evol. 14, 550-559.
22. Noro, M., Masuda, R., Dubrovo, I.A., Yoshida, M.C., Kato, M., 1998. Molecular phylogenetic inference of the woolly mammoth Mammuthus primigenius, based on complete sequences of mitochondrial cytochrome b and 12S ribosomal RNA genes. J. Mol. Evol. 46, 314-326.
23. Oakenfull, E.A., Lim, H.N., Ryder, O.A., 2000. A survey of equid mitochondrial DNA: implications for the evolution, genetic diversity and conservation of Equus. Conservation Genet. 1, 341-355.
24. Orlando, L., Bonjean, D., Bocherens, H., Thénot, A., Argant, A., Otte, M., Hänni, C., 2002. Ancient DNA and the population gentics of cave bears (Ursus spelaeus) through space and time. Mol. Biol. Evol. 19, 1920-1933.
25. Otte, M., Patou-Mathis, M., Bonjean, D., 1998. La grotte Scladina, vol. 2: L'archéologie. Eraul Liège, Belgium.
26. Ozawa, T., Hayashi, S., Mikhelson, V.M., 1997. Phylogenetic position of mammoth and Steller's sea cow within Tethytheria demonstrated by mitochondrial DNA sequences. J. Mol. Evol. 44, 406-413.
27. Prothero, D.-R., Guérin, C., Manning, E., 1989. The history of the Rhinocerotoidea. In: The Evolution of Perissodactyls. Oxford Univ. Press, New York.
28. Sorenson, M.D., Cooper, A., Paxinos, E.E., Quinn, T.W., James, H.F., Olson, S.L., Fleischer, R.C., 1999. Relationships of the extinct moa-nalos, flightless Hawaiian waterfowl, based on ancient DNA. Proc. R. Soc. Lond. B Biol. Sci. 266, 2187-2193.
29. Thew, N., Chaix, L., Guérin, C., 2000. Dernier cycle glaciaire et occupations paléolithiques à Alle, Noir Bois (Jura, Suisse). La faune, 93-98. D. Aubry, M. Guélat, J. Detrey, and B. Othenin-Girard. Cahier d'archéologie jurassienne, Porrentruy.
30. Tougard, C., Delefosse, T., Hänni, C., Montgelard, C., 2001. Phylogenetic relationships of the five extant Rhinoceros species (Rhinocerotidae, Perissodactyla) based on mitochondrial cytochrome b and 12S rRNA genes. Mol. Phylogenet. Evol. 19, 34-44.
31. Vila, C., Leonard, J.A., Gotherstrom, A., Marklund, S., Sandberg, K., Liden, K., Wayne, R.K., Ellegren, H., 2001. Widespread origins of domestic horse lineages. Science 291, 474-477.
32. Xu, X., Janke, A., Arnason, U., 1996. The complete mitochondrial DNA sequence of the greater Indian rhinoceros, Rhinoceros unicornis, and the phylogenetic relationship among Carnivora, Perissodactyla, and Artiodactyla (+Cetacea). Mol. Biol. Evol. 13, 1167-1173.
33. Xu, X., Arnason, U., 1997. The complete mitochondrial DNA sequence of the white rhinoceros, Ceratotherium simum, and comparison with the mtDNA sequence of the Indian rhinoceros, Rhinoceros unicornis. Mol. Phylogenet. Evol. 7, 189-194.