Analysis of the Alternative Oxidase Promoters from Soybean

Plant Physiology

Volumn 133, Issue 3, 2003, Pages 1158-1169

  Thirkettle Watts, David ^a   McCabe, Tulene C ^a   Clifton, Rachel ^a   Moore, Carolyn ^a   Finnegan, Patrick M ^a   Day, David A ^a   Whelan, James ^a  

^a UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

GENES; PLANT CELL CULTURE; PROTEINS; TISSUE;

ENDOGENOUS PROTEINS; GENE EXPRESSION;

PLANTS (BOTANY);

ARABIDOPSIS; EMBRYOPHYTA; GLYCINE MAX;

EID: 0344530427     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.103.028183     Document Type: Article

References (81)

1. Adams KL, Daley DO, Whelan J, Palmer JD (2002) Genes for two mitochondrial ribosomal proteins in flowering plants are derived from their chloroplast or cytosolic counterparts. Plant Cell 14: 931-943
2. Allen RD, Bernier F, Lessard PA, Beachy RN (1989) Nuclear factors interact with a soybean beta-conglycinin enhancer. Plant Cell 1: 623-631
3. Awazuhara M, Kim H, Goto DB, Matsui A, Hayashi H, Chino M, Kim S-G, Naito S, Fujiwara T (2002) A 235-bp region from a nutritionally regulated soybean seed-specific gene promoter can confer its sulfur and nitrogen response to a constitutive promoter in aerial tissues of Arabidopsis thaliana. Plant Sci 163: 75-82
4. Benfey PN, Ren L, Chua NH (1990) Tissue-specific expression from CaMV 35S enhancer subdomains in early stages of plant development. EMBO J 9: 1677-1684
5. Berger S, Mitchell-Olds T, Stotz HU (2002) Local and differential control of vegetative storage protein expression in response to herbivore damage in Arabidopsis thaliana. Physiol Plant 114: 85-91
6. Chen W, Provart NJ, Glazebrook J, Katagiri F, Chang HS, Eulgem T, Mauch F, Luan S, Zou G, Whitham SA et al. (2002) Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses. Plant Cell 14: 559-574
7. Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16: 735-743
8. Conley CA, Hanson MR (1994) Tissue-specific protein expression in plant mitochondria. Plant Cell 6: 85-91
9. Considine MJ, Daley DO, Whelan J (2001) The expression of alternative oxidase and uncoupling protein during fruit ripening in mango. Plant Physiol 126: 1619-1629
10. Considine MJ, Holtzapffel RC, Day DA, Whelan J, Millar AH (2002) Molecular distinction between alternative oxidase from monocots and dicots. Plant Physiol 129: 949-953
11. Crone D, Rueda J, Martin KL, Hamilton DA, Mascarenhas JP (2001) The differential expression of a heat shock promoter in floral and reproductive tissues. Plant Cell Environ 24: 869-874
12. Daley DO, Considine MJ, Howell KA, Millar AH, Day DA, Whelan J (2003) Respiratory gene expression in soybean cotyledons during post-germinative development. Plant Mol Biol 51: 745-755
13. Day DA, Arron GP, Laties GG (1980) Nature and control of respiratory pathways in plants: cyanide sensitive and cyanide resistant respiration. In PK Stumpf, EE Conn, eds, The Biochemistry of Plants, Vol 2. Academic Press, New York, pp 197-241
14. Day DA, Neuburger M, Douce R (1985) Biochemical characterization of chlorophyll-free mitochondria from pea leaves. Aust J Plant Physiol 12: 219-228
15. Day DA, Whelan J, Millar AH, Siedow JN, Wiskich JT (1995) Regulation of the alternative oxidase in plants and fungi. Aust J Plant Physiol 22: 497-509
16. Djajanegara I, Finnegan PM, Mathieu C, McCabe T, Whelan J, Day DA (2002) Regulation of alternative oxidase gene expression in soybean. Plant Mol Biol 50: 735-742
17. Donald RG, Cashmore AR (1990) Mutation of either G box or I box sequences profoundly affects expression from the Arabidopsis rbcS-1A promoter. EMBO J 9: 1717-1726
18. Elthon TE, Nickels RL, McIntosh L (1989) Monoclonal antibodies to the alternative oxidase of higher plant mitochondria. Plant Physiol 89: 1311-1317
19. Ermolaeva MD, Wu M, Eisen JA, Salzberg SL (2003) The age of the Arabidopsis thaliana genome duplication. Plant Mol Biol 51: 859-866
20. Finnegan PM, Whelan J, Millar AH, Zhang Q, Smith MK, Wiskich JT, Day DA (1997) Differential expression of the multigene family encoding the soybean mitochondrial alternative oxidase. Plant Physiol 114: 455-466
21. Fitch WM (2000) Homology a personal view on some of the problems. Trends Genet 16: 227-231
22. Foster R, Chua NH (1999) An Arabidopsis mutant with deregulated ABA gene expression: implications for negative regulator function. Plant J 17: 363-372
23. Gamborg OL, Miller RA, Ojima K (1968) Nutrient requirements of suspension cultures of soybean root cells. Exp Cell Res 50: 151-158
24. Giuliano G, Pichersky E, Malik VS, Timko MP, Scolnik PA, Cashmore AR (1988) An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene. Proc Natl Acad Sci USA 85: 7089-7093
25. Godon C, Caboche M, Daniel-Vedele F (1993) Transient plant gene expression: a simple and reproducible method based on flowing particle gun. Biochimie 75: 591-595
26. Grant D, Cregan P, Shoemaker RC (2000) Genome organization in dicots: genome duplication in Arabidopsis and synteny between soybean and Arabidopsis. Proc Natl Acad Sci USA 97: 4168-4173
27. He X, Futterer J, Hohn T (2002) Contribution of downstream promoter elements to transcriptional regulation of the rice tungro bacilliform virus promoter. Nucleic Acids Res 30: 497-506
28. Higo K, Ugawa Y, Iwamoto M, Korenaga T (1999) Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res 27: 297-300
29. Iida A, Seki M, Kamada M, Yamada Y, Morikawa H (1990) Gene delivery into cultured plant cells by DNA-coated gold particles accelerated by a pneumatic particle gun. Theor Appl Genet 80: 813-816
30. Jefferson RA, Kavanagh TA, Bevan MW (1987) GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J 6: 3901-3907
31. Johns C, Nickels R, McIntosh L, Mackenzie S (1993) The expression of alternative oxidase and alternative respiratory capacity in cytoplasmic male sterile common bean. Sex Plant Reprod 6: 257-265
32. Jupin I, Chua NH (1996) Activation of the CaMV as-1 cis-element by salicylic acid: differential DNA-binding of a factor related to TGA1a. EMBO J 15: 5679-5689
33. Kilby NJ, Davies GJ, Snaith MR (1995) FLP recombinase in transgenic plants: constitutive activity in stably transformed tobacco and generation of marked cell clones in Arabidopsis. Plant J 8: 637-652
34. Kim KY, Kwon Sy, Lee HS, Yunkang H, Bang JW, Kwak SS (2003) A novel oxidative stress-inducible promoter from sweet potato: molecular cloning and characterisation in transgenic plants and cultured cells. Plant Mol Biol 51: 831-838
35. Kirsch C, Logemann E, Lippok B, Schmelzer E, Hahlbrock K (2001) A highly specific pathogen-responsive promoter element from the immediate-early activated CMPG1 gene in Petroselinum crispum. Plant J 26: 217-227
36. Kitashiba H, Kitazawa E, Kishitani S, Toriyama K (1999) Partial male sterility in transgenic tobacco carrying an antisense gene for alternative oxidase under the control of a tapetum-specific promoter. Mol Breed 5: 209-218
37. Lagrange T, Gauvin S, Yeo HJ, Mache R (1997) S2F, a leaf-specific trans-acting factor, binds to a novel cis-acting element and differentially activates the RPL21 gene. Plant Cell 9: 1469-1479
38. Lambers H (1982) Cyanide resistant respiration: a non-phosphorylating electron transport pathway acting as an energy overflow. Physiol Plant 55: 478-485
39. Lee H, Xiong L, Ishitani M, Stevenson B, Zhu JK (1999) Cold-regulated gene expression and freezing tolerance in an Arabidopsis thaliana mutant. Plant J 17: 301-308
40. Lee P, Hsing Y, Chow T (2000) Promoter activity of a soybean gene encoding a seed maturation protein, GmPM9. Bot Bull Acad Sin 41: 175-182
41. Lessard PA, Allen RD, Bernier F, Crispino JD, Fujiwara T, Beachy RN (1991) Multiple nuclear factors interact with upstream sequences of differentially regulated beta-conglycinin genes. Plant Mol Biol 16: 397-413
42. Liu HX, Filipowicz W (1996) Mapping of branchpoint nucleotides in mutant pre-mRNAs expressed in plant cells. Plant J 9: 381-389
43. Lowry O, Rosebrough NJ, Farr AL, Randall RJ (1951) Protein measurements with the Folin phenol reagent. J Biol Chem 193: 265-275
44. Marsolier MC, Debrosses G, Hirel B (1995) Identification of several soybean cytosolic glutamine synthetase transcripts highly or specifically expressed in nodules: expression studies using one of the corresponding genes in transgenic Lotus corniculatus. Plant Mol Biol 27: 1-15
45. Martinez-Hernandez A, Lopez-Ochoa L, Arguello-Astorga G, Herrera-Estrella L (2002) Functional properties and regulatory complexity of a minimal RBCS light-responsive unit activated by phytochrome, cryptochrome, and plastid signals. Plant Physiol 128: 1223-1233
46. Maxwell DP, Nickels R, McIntosh L (2002) Evidence of mitochondrial involvement in the transduction of signals required for the induction of genes associated with pathogen attack and senescence. Plant J 29: 269-279
47. McCabe TC, Finnegan PM, Harvey Millar A, Day DA, Whelan J (1998) Differential expression of alternative oxidase genes in soybean cotyledons during postgerminative development. Plant Physiol 118: 675-682
48. McIntosh L, Eichler T, Gray G, Maxwell D, Nickels R, Wang Y (1998) Biochemical and genetic controls exerted by plant mitochondria. Biochim Biophys Acta 1365: 278-284
49. Medberry SL, Olszewski NE (1993) Identification of cis elements involved in Commelina yellow mottle virus promoter activity. Plant J 3: 619-626
50. Millar AH, Finnegan PM, Whelan J, Drevon JJ, Day DA (1997) Expression and kinetics of the mitochondrial alternative oxidase in nitrogen-fixing nodules of soybean roots. Plant Cell Environ 20: 1273-1282
51. Millenaar FF, Benschop JJ, Wagner AM, Lambers H (1998) The role of the alternative oxidase in stabilizing the in vivo reduction state of the ubiquinone pool and the activation state of the alternative oxidase. Plant Physiol 118: 599-607
52. Mirabella R, Martirani L, Lamberti A, Iaccarino M, Chiurazzi M (1999) The soybean ENOD40(2) promoter is active in Arabidopsis thaliana and is temporally and spatially regulated. Plant Mol Biol 39: 177-181
53. Moller IM (2001) Plant mitochondria and oxidative stress: electron transport, NADPH turnover, and metabolism of reactive oxygen species. Annu Rev Plant Physiol Plant Mol Biol 52: 561-591
54. Moore AL, Siedow JN (1991) The regulation and nature of the cyanide-resistant alternative oxidase of plant mitochondria. Biochim Biophys Acta 1059: 121-140
55. Moreno-Fonseca LP, Covarrubias AA (2001) Downstream DNA sequences are required to modulate Pvlea-18 gene expression in response to dehydration. Plant Mol Biol 45: 501-515
56. Prandl R, Kloske E, Schoffl F (1995) Developmental regulation and tissue-specific differences of heat shock gene expression in transgenic tobacco and Arabidopsis plants. Plant Mol Biol 28: 73-82
57. Purvis AC, Shewfelt RL (1993) Does the alternative pathway ameliorate chilling injury in sensitive plant tissue. Physiol Plant 88: 712-718
58. Rhoads DM, McIntosh L (1991) Isolation and characterisation of a cDNA clone encoding an alternative oxidase protein of Sauromatum guttatum (Schott). Proc Natl Acad Sci USA 88: 2122-2126
59. Saisho D, Nakazono M, Lee K, Tsutsumi N, Akita S, Hirai A (2001) The gene for alternative oxidase-2 (AOX2) from Arabidopsis thaliana consists of five exons unlike other AOX genes and is transcribed at an early stage during germination. Genes Genet Syst 76: 89-97
60. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, New York
61. Schledzewski K, Mendel RR (1994) Quantitative transient gene expression: comparison of the promoters for maize polyubiquitin1, rice actin1, maize-derived Emu and CaMV 35S in cells of barley, maize and tobacco. Transgenic Res 3: 249-255
62. Seymour RS (2001) Biophysics and physiology of temperature regulation in thermogenic flowers. Biosci Rep 21: 223-236
63. Stromvik MV, Sundararaman VP, Vodkin LO (1999) A novel promoter from soybean that is active in a complex developmental pattern with and without its proximal 650 base pairs. Plant Mol Biol 41: 217-231
64. Tanudji M, Djajanegara IN, Daley DO, McCabe TC, Finnegan PM, Day DA, Whelan J (1999) The multiple alternative oxidase proteins of soybean. Aust J Plant Physiol 26: 337-344
65. Terce-Laforgue T, Carrayol E, Cren M, Desbrosses G, Hecht V, Hirel B (1999) A strong constitutive positive element is essential for the ammonium-regulated expression of a soybean gene encoding cytosolic glutamine synthetase. Plant Mol Biol 39: 551-564
66. Thijs G, Lescot M, Marchal K, Rombauts S, De Moor B, Rouze P, Moreau Y (2001) A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling. Bioinformatics 17: 1113-1122
67. Trehin C, Ahn IO, Perennes C, Couteau F, Lalanne E, Bergounioux C (1997) Cloning of upstream sequences responsible for cell cycle regulation of the Nicotiana sylvestris CycB1;1 gene. Plant Mol Biol 35: 667-672
68. Ulmasov T, Murfett J, Hagen G, Guilfoyle TJ (1997) Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements. Plant Cell 9: 1963-1971
69. Vanlerberghe GC, Day DA, Wiskich JT, Vanlerberghe AE, MacIntosh L (1995) Alternative oxidase activity in tobacco leaf mitochondria: dependence on tricarboxylic acid cycle-mediated redox regulation and pyruvate activation. Plant Physiol 109: 353-361
70. Vanlerberghe GC, McIntosh L (1994) Mitochondrial electron transport regulation of nuclear gene expression: studies with the alternative oxidase gene of tobacco. Plant Physiol 105: 867-874
71. Vanlerberghe GC, McIntosh L (1997) Alternative oxidase: from gene to function. Annu Rev Plant Physiol Plant Mol Biol 48: 703-734
72. Vanlerberghe GC, Robson CA, Yip JY (2002) Induction of mitochondrial alternative oxidase in response to a cell signal pathway down-regulating the cytochrome pathway prevents programmed cell death. Plant Physiol 129: 1829-1842
73. Viswanathan C, Zhu JK (2002) Molecular genetic analysis of cold-regulated gene transcription. Philos Trans R Soc Lond B Biol Sci 357: 877-886
74. Wagner AM, Krab K (1995) The alternative respiration pathway in plants: role and regulation. Physiol Plant 95: 318-325
75. Wenz P, Schwank S, Hoja U, Schuller HJ (2001) A downstream regulatory element located within the coding sequence mediates autoregulated expression of the yeast fatty acid synthase gene FAS2 by the FAS1 gene product. Nucleic Acids Res 29: 4625-4632
76. Whelan J, Millar AH, Day DA (1996) The alternative oxidase is encoded in a multigene family in soybean. Planta 198: 197-201
77. Whelan J, Smith MK, Finnegan PM, Day DA (1999) Cloning and sequencing of a genomic done for the alternative oxidase (accession no. AF083880) from soybean. Plant Physiol 120: 663
78. Xiong L, Ishitani M, Lee H, Zhu JK (1999) HOS5-a negative regulator of osmotic stress-induced gene expression in Arabidopsis thaliana. Plant J 19: 569-578
79. Xu N, Hagen G, Guilfoyle T (1997) Multiple auxin response modules in the soybean SAUR 15A promoter. Plant Sci 126: 193-201
80. Yip JY, Vanlerberghe GC (2001) Mitochondrial alternative oxidase acts to dampen the generation of active oxygen species during a period of rapid respiration induced to support a high rate of nutrient uptake. Physiol Plant 112: 327-333
81. Zhou DX, Li YF, Rocipon M, Mache R (1992) Sequence-specific interaction between S1F, a spinach nuclear factor, and a negative cis-element conserved in plastid-related genes. J Biol Chem 267: 23515-23519