-
1
-
-
0000089238
-
Linear scaling density functional calculations with gaussian orbitals
-
G.E. Scuseria, Linear scaling density functional calculations with gaussian orbitals, J. Phys. Chem. A 103 (1999) 4782-4790.
-
(1999)
J. Phys. Chem. A
, vol.103
, pp. 4782-4790
-
-
Scuseria, G.E.1
-
2
-
-
0000725931
-
What is the best alternative to diagonalization of the hamiltonian in large scale semiempirical calculalions?
-
A.D. Daniels, G.E. Scuseria, What is the best alternative to diagonalization of the hamiltonian in large scale semiempirical calculalions?, J. Chem. Phys. 110 (1999) 1321-1328.
-
(1999)
J. Chem. Phys.
, vol.110
, pp. 1321-1328
-
-
Daniels, A.D.1
Scuseria, G.E.2
-
3
-
-
0000990502
-
Linear-scaling quantum mechanical calculations of biological molecules: The divide-and-conquer approach
-
T-S. Lee, J.P. Lewis, W. Yang, Linear-scaling quantum mechanical calculations of biological molecules: the divide-and-conquer approach, Comput. Mater. Sci. 12 (1998) 259-277.
-
(1998)
Comput. Mater. Sci.
, vol.12
, pp. 259-277
-
-
Lee, T.-S.1
Lewis, J.P.2
Yang, W.3
-
4
-
-
0001499720
-
Linear scaling molecular orbital calculations of biological systems using the semiempirical divide conquer method
-
A. van der Vaart, V. Gogonea, S.L. Dixon, K.M. Merz, Linear scaling molecular orbital calculations of biological systems using the semiempirical divide and conquer method, J. Comp. Chem. 21 (2000) 1494-1504.
-
(2000)
J. Comp. Chem.
, vol.21
, pp. 1494-1504
-
-
Van Der Vaart, A.1
Gogonea, V.2
Dixon, S.L.3
Merz, K.M.4
-
5
-
-
0000138517
-
An effective fragment method for modeling solvent effects in quantum mechanical calculations
-
P.N. Day, J.H. Jensen, M.S. Gordon, S.P. Webb, W.J. Stevens, M. Krauss, D. Gramer, H. Basch, D. Cohen, An effective fragment method for modeling solvent effects in quantum mechanical calculations, J. Chem. Phys. 105 (1996) 1968-1986.
-
(1996)
J. Chem. Phys.
, vol.105
, pp. 1968-1986
-
-
Day, P.N.1
Jensen, J.H.2
Gordon, M.S.3
Webb, S.P.4
Stevens, W.J.5
Krauss, M.6
Gramer, D.7
Basch, H.8
Cohen, D.9
-
6
-
-
0034225741
-
QM/MM boundaries across covalent bonds: A frozen localized molecular orbital-based approach for the effective fragment potential method
-
V. Kairys, J.H. Jensen, QM/MM boundaries across covalent bonds: a frozen localized molecular orbital-based approach for the effective fragment potential method, J. Phys. Chem. A 104 (2000) 6656-6665.
-
(2000)
J. Phys. Chem. A
, vol.104
, pp. 6656-6665
-
-
Kairys, V.1
Jensen, J.H.2
-
7
-
-
0035138053
-
The effective fragment potential method: A QM-based MM approach to modeling environmental effects in chemistry
-
M.S. Gordon, M.A. Freitag, P. Bandyopadhyay, J.H. Jensen, V. Kairys, W.J. Stevens, The effective fragment potential method: a QM-based MM approach to modeling environmental effects in chemistry, J. Phys. Chem. A 105 (2001) 293-307.
-
(2001)
J. Phys. Chem. A
, vol.105
, pp. 293-307
-
-
Gordon, M.S.1
Freitag, M.A.2
Bandyopadhyay, P.3
Jensen, J.H.4
Kairys, V.5
Stevens, W.J.6
-
8
-
-
0035933971
-
A new separable potential operator for representing a chemical bond and other applications
-
I.V. Abarenkov, I.I. Tupitsyn, A new separable potential operator for representing a chemical bond and other applications, J. Chem. Phys. 115 (2001) 1650-1660.
-
(2001)
J. Chem. Phys.
, vol.115
, pp. 1650-1660
-
-
Abarenkov, I.V.1
Tupitsyn, I.I.2
-
9
-
-
0017100947
-
Theoretical studies of enzymic reactions: Dielectric, electrostatic and steric stabilization of the carbonium ion in the reaction of lysozyme
-
A. Warshell, M. Levitt, Theoretical studies of enzymic reactions: dielectric, electrostatic and steric stabilization of the carbonium ion in the reaction of lysozyme, J. Mol. Biol. 103 (1976) 227-249.
-
(1976)
J. Mol. Biol.
, vol.103
, pp. 227-249
-
-
Warshell, A.1
Levitt, M.2
-
10
-
-
0032711930
-
Combined quantum mechanical/molecular mechanical methodologies applied to biomolecular systems
-
G. Monard Jr., K.M. Merz, Combined quantum mechanical/molecular mechanical methodologies applied to biomolecular systems, Acc. Chem. Res. 32 (1999) 904-911.
-
(1999)
Acc. Chem. Res.
, vol.32
, pp. 904-911
-
-
Monard Jr., G.1
Merz, K.M.2
-
11
-
-
84962367344
-
-
VCH, New York
-
J. Gao, Reviews in Computational Chemistry, Methods and Applications of Combined Quantum Mechanical and Molecular Mechanical Potential, vol. 7, VCH, New York, 1996, pp. 119-85.
-
(1996)
Reviews in Computational Chemistry, Methods and Applications of Combined Quantum Mechanical and Molecular Mechanical Potential
, vol.7
, pp. 119-185
-
-
Gao, J.1
-
12
-
-
0034378656
-
A new methodology for modeling spectator chemical groups in ab initio calculations: Effective group potentials
-
F. Alary, R. Poteau, J.-L. Heully, J.-C. Barthelat, J.-P. Daudey, A new methodology for modeling spectator chemical groups in ab initio calculations: effective group potentials, Theor. Chem. Acc. 104 (2000) 174-178.
-
(2000)
Theor. Chem. Acc.
, vol.104
, pp. 174-178
-
-
Alary, F.1
Poteau, R.2
Heully, J.-L.3
Barthelat, J.-C.4
Daudey, J.-P.5
-
13
-
-
0035127331
-
Effective group potentials. 1 Method
-
R. Poteau, I. Ortega, F. Alary, A. Ramirez Solis, J.-C. Barthelat, J.-P. Daudey, Effective group potentials. 1 Method, J. Phys. Chem. A 105 (2001) 198-205.
-
(2001)
J. Phys. Chem. A
, vol.105
, pp. 198-205
-
-
Poteau, R.1
Ortega, I.2
Alary, F.3
Ramirez Solis, A.4
Barthelat, J.-C.5
Daudey, J.-P.6
-
14
-
-
0035129987
-
Effective group potentials. 2. Extraction and transferability for chemical groups involved in covalent or donor-acceptor bonds
-
R. Poteau, F. Alary, H.A. el Makarim, J.-L. Heully, J.-C. Barthelat, J.-P. Daudey, Effective group potentials. 2. Extraction and transferability for chemical groups involved in covalent or donor-acceptor bonds, J. Phys. Chem. A 105 (2001) 206-214.
-
(2001)
J. Phys. Chem. A
, vol.105
, pp. 206-214
-
-
Poteau, R.1
Alary, F.2
El Makarim, H.A.3
Heully, J.-L.4
Barthelat, J.-C.5
Daudey, J.-P.6
-
15
-
-
0037155362
-
The effective group potential, a new method for the study of very large molecules: Tests and perspectives
-
J.-L. Heully, R. Poteau, S. Berasaluce, F. Alary, The effective group potential, a new method for the study of very large molecules: tests and perspectives, J. Chem. Phys. 116 (2002) 4829-4836.
-
(2002)
J. Chem. Phys.
, vol.116
, pp. 4829-4836
-
-
Heully, J.-L.1
Poteau, R.2
Berasaluce, S.3
Alary, F.4
-
16
-
-
84899103692
-
-
Wiley, New York
-
P. Durand, J.-P. Malrieu, Advances in Chemical Physics: Ab Initio Methods in Quantum Chemistry, vol. LXVII, part I, Wiley, New York, 1987, pp. 321-412.
-
(1987)
Advances in Chemical Physics: Ab Initio Methods in Quantum Chemistry
, vol.67
, Issue.PART I
, pp. 321-412
-
-
Durand, P.1
Malrieu, J.-P.2
-
17
-
-
0344809702
-
The effective fragment potential method. An approximate ab initio MO method for large molecules
-
K. Ohta, Y. Yoshioka, K. Morokuma, K. Kitaura, The effective fragment potential method. An approximate ab initio MO method for large molecules, Chem. Phys. Lett. 101 (1983) 12-17.
-
(1983)
Chem. Phys. Lett.
, vol.101
, pp. 12-17
-
-
Ohta, K.1
Yoshioka, Y.2
Morokuma, K.3
Kitaura, K.4
-
18
-
-
0040484849
-
Effective potentials for spectator groups in molecular systems. I. Potential curves and binding energies
-
M. von Arnim, S.D. Peyerimhoff, Effective potentials for spectator groups in molecular systems. I. Potential curves and binding energies, Theor. Chim. Acta 87 (1993) 41-57.
-
(1993)
Theor. Chim. Acta
, vol.87
, pp. 41-57
-
-
Von Arnim, M.1
Peyerimhoff, S.D.2
-
19
-
-
0039559273
-
A non-local representation of the effective potential due to a molecular fragment
-
R. Colle, A. Curioni, O. Salvetti, A non-local representation of the effective potential due to a molecular fragment, Theor. Chim. Acta 86 (1993) 451-465.
-
(1993)
Theor. Chim. Acta
, vol.86
, pp. 451-465
-
-
Colle, R.1
Curioni, A.2
Salvetti, O.3
-
20
-
-
0000473603
-
Adjusted connection atoms for combined quantum mechanical molecular mechanical methods
-
I. Antes, W. Thiel, Adjusted connection atoms for combined quantum mechanical and molecular mechanical methods, J. Phys. Chem. A 103 (1999) 9290-9295.
-
(1999)
J. Phys. Chem. A
, vol.103
, pp. 9290-9295
-
-
Antes, I.1
Thiel, W.2
-
21
-
-
0001582558
-
A pseudobond approach to combining quantum mechanical and molecular mechanical methods
-
Y. Zhang, T-S. Lee, W. Yang, A pseudobond approach to combining quantum mechanical and molecular mechanical methods, J. Chem. Phys. 110 (1999) 46-54.
-
(1999)
J. Chem. Phys.
, vol.110
, pp. 46-54
-
-
Zhang, Y.1
Lee, T.-S.2
Yang, W.3
-
23
-
-
26344466490
-
4, X = 4, F, Cl
-
4, X = 4, F, Cl, Chem. Phys. Lett. 183 (1991) 227-233.
-
(1991)
Chem. Phys. Lett.
, vol.183
, pp. 227-233
-
-
Ahlrichs, R.1
Ehrig, M.2
Horn, H.3
-
24
-
-
0001571593
-
Theoretical calculations on Nb and Ta trihydride complexes relations with the problem of quantum mechanical exchange coupling
-
J.-C. Barthelat, B. Chaudret, J.-P. Daudey, Ph. de Loth, R. Poiblanc, Theoretical calculations on Nb and Ta trihydride complexes relations with the problem of quantum mechanical exchange coupling, J. Am. Chem. Soc. 113 (1991) 9896-9898.
-
(1991)
J. Am. Chem. Soc.
, vol.113
, pp. 9896-9898
-
-
Barthelat, J.-C.1
Chaudret, B.2
Daudey, J.-P.3
De Loth, Ph.4
Poiblanc, R.5
-
25
-
-
84988109715
-
One-center expansion for pseudopotential matrix elements
-
M. Pelissier, N. Komiha, J.-P. Daudey, One-center expansion for pseudopotential matrix elements, J. Comp. Chem. 9 (1988) 298-302.
-
(1988)
J. Comp. Chem.
, vol.9
, pp. 298-302
-
-
Pelissier, M.1
Komiha, N.2
Daudey, J.-P.3
-
26
-
-
0005643125
-
A new general methodology for deriving effective Hamiltonians for atoms and molecules. Application to the transferability of atomic potentials in the hydrocarbon series
-
G. Nicolas, Ph. Durand, A new general methodology for deriving effective Hamiltonians for atoms and molecules. Application to the transferability of atomic potentials in the hydrocarbon series, J. Chem. Phys 72 (1980) 453-463.
-
(1980)
J.Chem. Phys.
, vol.72
, pp. 453-463
-
-
Nicolas, G.1
Durand, Ph.2
-
27
-
-
84881454506
-
-
M.J. Frisch, G.W. Trucks, H.B. Schlegel, G.E. Scuseria, M.A. Robb, J.R. Cheeseman, V.G. Zakrzewski, J.A. Montgomery, Jr., R.E. Stratmann, J.C. Burant, S. Dapprich, J.M. Millam, A.D. Daniels, K.N. Kudin, M.C. Strain, O. Farkas, J. Tomasi, V. Barone, M. Cossi, R. Cammi, B. Mennucci, C. Pomelli, C. Adamo, S. Clifford, J. Ochterski, G.A. Petersson, P.Y. Ayala, Q. Cui, K. Morokuma, D.K. Malick, A.D. Rabuck, K. Raghavachari, J.B. Foresman, J. Cioslowski, J.V. Ortiz, A.G. Baboul, B.B. Stefanov, G. Liu, A. Liashenko, P. Piskorz, I. Komaromi, R. Gomperts, R.L. Martin, D.J. Fox, T. Keith, M.A. Al-Laham, C.Y. Peng, A. Nanayakkara, C. Gonzalez, M. Challacombe, P.M.W. Gill, B.G. Johnson, W. Chen, M.W. Wong, J.L. Andres, M. Head-Gordon, E.S. Replogle, J.A. People. Gaussian 98 (revision a.9), 1998.
-
(1998)
Gaussian 98 (Revision a.9)
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Zakrzewski, V.G.7
Montgomery Jr., J.A.8
Stratmann, R.E.9
Burant, J.C.10
Dapprich, S.11
Millam, J.M.12
Daniels, A.D.13
Kudin, K.N.14
Strain, M.C.15
Farkas, O.16
Tomasi, J.17
Barone, V.18
Cossi, M.19
Cammi, R.20
Mennucci, B.21
Pomelli, C.22
Adamo, C.23
Clifford, S.24
Ochterski, J.25
Petersson, G.A.26
Ayala, P.Y.27
Cui, Q.28
Morokuma, K.29
Malick, D.K.30
Rabuck, A.D.31
Raghavachari, K.32
Foresman, J.B.33
Cioslowski, J.34
Ortiz, J.V.35
Baboul, A.G.36
Stefanov, B.B.37
Liu, G.38
Liashenko, A.39
Piskorz, P.40
Komaromi, I.41
Gomperts, R.42
Martin, R.L.43
Fox, D.J.44
Keith, T.45
Al-Laham, M.A.46
Peng, C.Y.47
Nanayakkara, A.48
Gonzalez, C.49
Challacombe, M.50
Gill, P.M.W.51
Johnson, B.G.52
Chen, W.53
Wong, M.W.54
Andres, J.L.55
Head-Gordon, M.56
Replogle, E.S.57
People, J.A.58
more..
-
28
-
-
0003392598
-
-
K. Andersson, M. Barysz, A. Bernhardsson, M.R.A. Blomberg, D.L. Cooper, T. Fleig, M.P. Fülscher, C. de Graaf, A. Hess, G. Karlström, R. Lindh, P.-Å. Malmqvist, P. Neogrády, J. Olsen, B.O. Roos, B. Schimmelpfennig, M. Schütz, L. Seijo, L. Serrano-Andrés, P.E.M. Siegbahn, J. Stårling, T. Thorsteinsson, P.-O. Widmark. Molcas version 5., 2000.
-
(2000)
Molcas Version 5
-
-
Andersson, K.1
Barysz, M.2
Bernhardsson, A.3
Blomberg, M.R.A.4
Cooper, D.L.5
Fleig, T.6
Fülscher, M.P.7
De Graaf, C.8
Hess, A.9
Karlström, G.10
Lindh, R.11
Malmqvist, P.-Å.12
Neogrády, P.13
Olsen, J.14
Roos, B.O.15
Schimmelpfennig, B.16
Schütz, M.17
Seijo, L.18
Serrano-Andrés, L.19
Siegbahn, P.E.M.20
Stårling, J.21
Thorsteinsson, T.22
Widmark, P.-O.23
more..
-
29
-
-
0037035194
-
5 with atoms or effective group potentials in lanthanide complexes: Isolobality not the determining factor
-
5 with atoms or effective group potentials in lanthanide complexes: isolobality not the determining factor, J. Phys. Chem. A 106 (2002) 1797-1801.
-
(2002)
J. Phys. Chem. A
, vol.106
, pp. 1797-1801
-
-
Maron, L.1
Eisenstein, O.2
Alary, F.3
Poteau, R.4
-
30
-
-
37049107850
-
Dicarbonylbis (η-cyclopentadienyl)titanium(II) chemistry: Reactions with organic molecules containing C-CI, P-CI, O-H, S-CI bonds; synthesis, properties, and structure of η-acyl derivatives of titanium(IV)
-
G. Fachinetti, C. Floriani, H. Stoeckli-Evans, Dicarbonylbis (η-cyclopentadienyl)titanium(II) chemistry: reactions with organic molecules containing C-CI, P-CI, O-H, S-CI bonds; synthesis, properties, and structure of η-acyl derivatives of titanium(IV), J. Chem. Soc. Dalton Trans. (1977) 2297-2302.
-
(1977)
J. Chem. Soc. Dalton Trans.
, pp. 2297-2302
-
-
Fachinetti, G.1
Floriani, C.2
Stoeckli-Evans, H.3
-
32
-
-
0344377938
-
-
in press
-
F. Alary, J.-L. Heully, R. Poteau, L. Maron, G. Trinquier, J.-P. Daudey. J. Am. Chem. Soc. (2003) in press.
-
(2003)
J. Am. Chem. Soc.
-
-
Alary, F.1
Heully, J.-L.2
Poteau, R.3
Maron, L.4
Trinquier, G.5
Daudey, J.-P.6
-
33
-
-
84985520810
-
Building bridges between inorganic organic chemistry (Nobel Lecture)
-
R. Hoffmann, Building bridges between inorganic and organic chemistry (Nobel Lecture), Angew. Chem., Int. Ed. Engng 21 (1982) 711-800.
-
(1982)
Angew. Chem., Int. Ed. Engng.
, vol.21
, pp. 711-800
-
-
Hoffmann, R.1
-
34
-
-
0003947806
-
-
Wiley, New York
-
T.A. Albright, J.K. Burdett, M.-H. Whangbo, Orbital interactions in chemistry, Wiley, New York, 1985.
-
(1985)
Orbital Interactions in Chemistry
-
-
Albright, T.A.1
Burdett, J.K.2
Whangbo, M.-H.3
-
35
-
-
0037197652
-
Specific force field parameters determination for the hybrid ab initio QM/MM LSCF method
-
N. Ferré, X. Assfeld, J.-L. Rivail, Specific force field parameters determination for the hybrid ab initio QM/MM LSCF method, J. Comp. Chem. 23 (2002) 610-624.
-
(2002)
J. Comp. Chem.
, vol.23
, pp. 610-624
-
-
Ferré, N.1
Assfeld, X.2
Rivail, J.-L.3
-
37
-
-
0000151568
-
Excited states of the bacteriochlorophyll b dimer of rhodopseudonomas viridis: A QM/MM study of the photosynthetic reaction center that includes MM polarization
-
M.A. Thomson, G.K. Schenter, Excited states of the bacteriochlorophyll b dimer of rhodopseudonomas viridis: a QM/MM study of the photosynthetic reaction center that includes MM polarization, J. Phys. Chem. 99 (1995) 6374-6386.
-
(1995)
J. Phys. Chem.
, vol.99
, pp. 6374-6386
-
-
Thomson, M.A.1
Schenter, G.K.2
-
38
-
-
0000145441
-
Free energy calculation on enzyme reactions with an efficient iterative procedure to determine minimum energy paths on a combined ab initio QM/MM potential energy surface
-
Y. Zhang, H. Liu, W. Yang, Free energy calculation on enzyme reactions with an efficient iterative procedure to determine minimum energy paths on a combined ab initio QM/MM potential energy surface, J. Chem. Phys. 112 (2000) 3483-3492.
-
(2000)
J. Chem. Phys.
, vol.112
, pp. 3483-3492
-
-
Zhang, Y.1
Liu, H.2
Yang, W.3
-
39
-
-
84986492373
-
Quantum mechanical computations on very large molecular systems: The local self-consistent field
-
V. Théry, D. Rinaldi, J.-L. Rivail, B. Maigret, G.G. Ferenczy, Quantum mechanical computations on very large molecular systems: the local self-consistent field, J. Comp. Chem. 15 (1994) 269-282.
-
(1994)
J. Comp. Chem.
, vol.15
, pp. 269-282
-
-
Théry, V.1
Rinaldi, D.2
Rivail, J.-L.3
Maigret, B.4
Ferenczy, G.G.5
-
40
-
-
0002083815
-
Hybrid classical quantum force field for modeling very large molecules
-
G. Monard, M. Loos, V. Théry, K. Baka, J.-L. Rivail, Hybrid classical quantum force field for modeling very large molecules, Int. J. Quant. Chem. 58 (1996) 153-159.
-
(1996)
Int. J. Quant. Chem.
, vol.58
, pp. 153-159
-
-
Monard, G.1
Loos, M.2
Théry, V.3
Baka, K.4
Rivail, J.-L.5
-
41
-
-
0032475433
-
Modeling of peptide hydrolysis by thermolysin. A semiempirical and QM/MM study
-
S. Antonczak, G. Monard, M.F. Ruiz-López, J.-L. Rivail, Modeling of peptide hydrolysis by thermolysin. A semiempirical and QM/MM study, J. Am. Chem. Soc. 120 (1998) 4714-4721.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 4714-4721
-
-
Antonczak, S.1
Monard, G.2
Ruiz-López, M.F.3
Rivail, J.-L.4
-
42
-
-
0000411659
-
A generalized hybrid orbital (GHO) method for the treatment of boundary atoms in combined QM/MM calculations
-
J. Gao, P. Amara, C. Alhambra, M.J. Field, A generalized hybrid orbital (GHO) method for the treatment of boundary atoms in combined QM/MM calculations, J. Phys. Chem. A 102 (1998) 4714-4721.
-
(1998)
J. Phys. Chem. A
, vol.102
, pp. 4714-4721
-
-
Gao, J.1
Amara, P.2
Alhambra, C.3
Field, M.J.4
-
43
-
-
0001763714
-
Frontier bonds in QM/MM methods: A comparison of different approaches
-
N. Reuter, A. Dejagere, B. Maigret, M. Karplus, Frontier bonds in QM/MM methods: a comparison of different approaches, J. Phys. Chem. A 104 (2000) 1720-1735.
-
(2000)
J. Phys. Chem. A
, vol.104
, pp. 1720-1735
-
-
Reuter, N.1
Dejagere, A.2
Maigret, B.3
Karplus, M.4
-
44
-
-
0030573150
-
Quantum chemical computations on parts of large molecules: The ab inifio local self consistent field method
-
X. Assfeld, J.-L. Rivail, Quantum chemical computations on parts of large molecules: the ab inifio local self consistent field method, Chem. Phys. Lett. 263 (1996) 100-106.
-
(1996)
Chem. Phys. Lett.
, vol.263
, pp. 100-106
-
-
Assfeld, X.1
Rivail, J.-L.2
-
45
-
-
0041468782
-
On the application of the IMOMO (integrated molecular orbital + molecular orbital) method
-
T. Vreven, K. Morokuma, On the application of the IMOMO (integrated molecular orbital + molecular orbital) method, J. Comp. Chem. 21 (2000) 1419-1432.
-
(2000)
J. Comp. Chem.
, vol.21
, pp. 1419-1432
-
-
Vreven, T.1
Morokuma, K.2
-
46
-
-
84986527758
-
IMOMM: A new integrated ab initio molecular mechanics geometry optimization scheme of equilibrium structures and transition states
-
F. Maseras, K. Morokuma, IMOMM: a new integrated ab initio molecular mechanics geometry optimization scheme of equilibrium structures and transition states, J. Comp. Chem. 16 (1995) 1170-1179.
-
(1995)
J. Comp. Chem.
, vol.16
, pp. 1170-1179
-
-
Maseras, F.1
Morokuma, K.2
|