Complex genomic and phenotypic characterization of the related species Staphylococcus carnosus and Staphylococcus piscifermentans

International Journal of Systematic Bacteriology

Volumn 49, Issue 3, 1999, Pages 941-951

  Pantůček, Roman ^a   Sedláček, Ivo ^a   Doškař, Jiří ^a   Rosypal, Stanislav ^a  

^a MASARYK UNIVERSITY   (Czech Republic)

Author keywords

ERIC PCR; PFGE; Ribotyping; Staphylococcus carnosus; Staphylococcus piscifermentans

Indexed keywords

ARTICLE; BACTERIAL GENETICS; BACTERIUM ISOLATION; DNA DNA HYBRIDIZATION; DNA FINGERPRINTING; NONHUMAN; PHENOTYPE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION MAPPING; RIBOTYPING; SPECIES DIFFERENCE; STAPHYLOCOCCUS CARNOSUS;

BACTERIA (MICROORGANISMS); ENTEROBACTERIACEAE; POSIBACTERIA; STAPHYLOCOCCUS CARNOSUS; STAPHYLOCOCCUS CARNOSUS SUBSP. UTILIS; STAPHYLOCOCCUS CONDIMENTI; STAPHYLOCOCCUS PISCIFERMENTANS;

EID: 0344223273     PISSN: 00207713     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-49-3-941     Document Type: Article

References (84)

1. Augustin, J. & Götz, F. (1990). Transformation of Staphylococcus epidermidis and other staphylococcal species with plasmid DNA by electroporation. FEMS Microbiol Leu 66, 203-208.
2. Augustin, J., Rosenstein, R., Wieland, B., Schneider, U., Schnell, N., Engelke, G., Entian, K.-D. & Götz, F. (1992). Genetic analysis of epidermin biosynthetic genes and epidermin-negative mutants of Staphylococcus epidermidis. Ear J Biochem 204, 1149-1154.
3. Ayora, S. & Götz, F. (1994). Genetic and biochemical properties of an extracellular neutral metalloprotease from Staphylococcus hyicus subsp. liyicus. Mol Gen Genet 242, 421-430.
4. Bangsborg, J. M., Gerner-Smidt, P., Colding, H., Fiehn, N.-E., Bruun, B. & Hoiby, N. (1995). Restriction fragment length polymorphism of rRNA genes for molecular typing of the family Legionellaceae. J Clin Microbiol 33, 402-406.
5. Barrow, G.I. & Feltham, R. K. A. (editors) (1993). Cowan and SteePs Manual for the Identification of Medical Bacteria, 3rd edn. Cambridge: Cambridge University Press.
6. van Belkum, A., Bax, R., van der Straaten, P. J. C, Quint, W. G. V. & Veringa, E. (1994). PCR fingerprinting for epidemiological studies of Staphylococcus aureus. J Microbiol Methods 20, 235-247.
7. van Belkum, A., Kluytmans, J., van Leeuwen, W. & 16 other authors (1995). Multicentre evaluation of arbitrarily primed PCR for typing of Staphylococcus aureus strains. J Clin Microbiol 33, 1537-1547.
8. Brückner, R. (1997). Gene replacement in Staphylococcus carnosus and Staphylococcus xylosus. FEMS Microbiol Lett 151, 1-8.
9. Brückner, R. & Götz, F. (1996). Development of a food-grade vector system for Staphylococcus carnosus. Syst Appl Microbiol 18,510-516.
10. Chesneau, O., Aubert, S., Morvan, A., Guesdon, J. L. & El Solh, N. (1992). Usefulness of the ID32 Staph system and a method based on rRNA gene restriction site polymorphism analysis for species and subspecies identification of staphylococcal clinical isolates. J Clin Microbiol 30, 2346-2352.
11. Chesneau, O., Morvan, A., Grimont, F., Labischinski, H. & El Solh, N. (1993). Staphylococcus pasteuri sp. nov., isolated from human, animal, and food specimens. Int J Syst Bacterial 43, 237-244.
12. Christiansen, I. & Hengstenberg, W. (1996). Cloning and sequencing of two genes from Staphylococcus carnosus encoding glucose-specific PTS and their expression in Escherichia coli K12. Mol Gen Genet 250, 375-379.
13. Connolly, S., Phillips, I. & Noble, W. C. (1994). Cloning and expression of the mupirocin resistance gene in Staphylococcus carnosus. Med Microbiol Lett 3, 409-415.
14. De Buyser, M. L, Morvan, A., Grimont, F. & El Solh, N. (1989). Characterization of Staphylococcus species by rRNA gene restriction patterns. J Gen Microbiol 135, 989-999.
15. De Buyser, M. L, Morvan, A., Aubert, S., Dilasser, F. & El Solh, N. (1992). Evaluation of a rRNA gene probe for the identification of species and subspecies within the genus Staphylococcus. J Gen Microbiol 138, 889-899.
16. Demleitner, G. & Götz, F. (1994). Evidence for importance of the Staphylococais hyiciis lipase pro-peptide in lipase secretion, stability and activity. FEMS Microbiol Lett 121, 189-197.
17. Dowling, T. E., Moritz, C. & Palmer, J. D. (1990). Nucleic acids II: restriction site analysis. In Molecular Systematics, pp. 250-315. Edited by D. M. Hillis & C. Moritz. Sunderland, MA: Sinauer.
18. El Solh, N., De Buyser, M. L, Morvan, A., Grimont, F., SalesseWalcher, S., Aubert, S., Monzon-Monreo, C, Chesneau, O. & Allignet, J. (1990). Use of Bacillus subtilis 16S rRNA genes as a probe to identify species, subspecies and types in the genus Staphylococcus. In Molecular Biology of the Staphylococci, pp. 585-593. Edited by R. P. Novick. New York: VCH.
19. Fast, B., Lindgren, P. E. & Götz, F. (1996). Cloning, sequencing, and characterization of a gene (narT) encoding a transport protein involved in dissimilatory nitrate reduction in Staphylococcus carnosus. Arch Microbiol 166, 361-367.
20. Fischer, U. & Schleifer, K. H. (1980). Zum Vorkommen der Grampositiven, katalase-positiven Kokken in Rohwurst. Fleischwirtschaft 60, 1046-1051.
21. George, C. G. & Kloos, W. E. (1994). Comparison of the Smaldigested chromosomes of Staphylococcus epidermidis and the closely related species Staphylococcus capitis and Staphylococcus caprae. Int J Syst Bacterial 44, 404-409.
22. Götz, F. (1990). Staphylococcus carnosus: a new host organism for gene cloning and protein production. J Appl Bacterial (Symp Suppl) 49S-53S.
23. Götz, F. & Schumacher, B. (1987). Improvements of protoplast transformation in Staphylococcus carnosus. FEMS Microbiol Lett 40, 285-288.
24. Götz, F., Kreutz, B. & Schleifer, K. H. (1983). Protoplast transformation of Staphylococcus carnosus by plasmid DNA. Mol Gen Genet 189, 340-342.
25. Grattard, F., Etienne, J., Pozzetto, B., Tardy, F., Gaudin, O. G. & Fleurette, J. (1993). Characterization of unrelated strains of Staphylococcus schleifen by using rDNA fingerprinting, DNA restriction patterns, and plasmid profiles. J Clin Microbiol 31, 812-818.
26. Half mann. G., Götz, F. & Lubitz, W. (1993). Expression of bacteriophage φX174 lysis gene-E in Staphylococcus carnosus TM300. FEMS Microbiol Lett 108, 139-144.
27. Hammes, W. P., Bosch, I. & Wolf, G. (1995). Contribution of Staphylococcus carnosus and Staphylococcus piscifermentans to the fermentation of protein foods. J Appl Bacterial (Symp Suppl) 76S-83S.
28. Hartmann, S.. Wolf, G. & Hammes, W. P. (1995). Reduction of nitrite by Staphylococcus carnosus and Staphylococcus piscifermentans. Syst Appl Microbiol 18, 323-328.
29. Hébert, G. A.. Crowder, C. G., Hancock, G. A., Jarvis, W. R. & Thornsberry, C. (1988). Characteristics of coagulase-negative Staphylococci that help differentiate these species and other members of the family Micrococcaceae. J Clin Microbiol 26, 1939-1949.
30. Heilmann, C, Schweitzer, O., Gerke, C, Vanittanakom, N., Mack, D. & Götz, F. (1996). Molecular basis of intercellular adhesion in the biofilm-forming Staphylococcus epidermidis. Mol Microbiol 20, 1083-1091.
31. Hesselbarth, J. & Schwarz, S. (1995). Comparative ribotyping of Staphylococcus intermedius from dogs, pigeons, horses and mink. Vet Microbiol 45, 11-17.
32. Holt, J. G., Krieg, N. R., Sneath, P. H. A., Staley, J. T. & Williams, S. T. (1994). Bergey's Manual of Determinative Bacteriology, 9th edn. Baltimore: Williams & Wilkins.
33. Keller, G., Schleifer, K. H. & Götz, F. (1983). Construction and characterization of plasmid vectors for cloning in Staphylococcits aureiis and Staphylococcus carnosits. Plasmid 10, 270-278.
34. Kessler, L G. & Avise, J. C. (1985). A comparative description of mitochondrial differentiation in selected avian and other vertebrate genera. Mol Biol Evol 2, 109-126.
35. Kloos, W. E. & Schleifer, K. H. (1975). Simplified scheme for routine identification of human Staphylococcus species. J Clin Microbiol 1, 82-88.
36. Kloos, W. E. & Bannerman, T. (1994). Update on clinical significance of coagulase-negative staphylococci. Clin Microbiol Revl, 117-140.
37. Kloos, W. E. & Bannerman, T. (1995). Staphylococcus and Micrococcus. In Manual of Clinical Microbiology, 6th edn, pp. 282-298. Edited by P. R. Murray, E. J. Baron, M. A. Pfaller, F. C. Tenover & R. H. Yolken. Washington, DC: American Society for Microbiology.
38. Kloos, W. E., Schleifer, K. H. & Götz, F. (1992). The genus Staphylococcus. In The Prokaryotes, 2nd edn, pp. 1369-1420. Edited by A. Balows, H. G. Truper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer.
39. Kloos, W. E., Ballard, D. N., Webster, J. A. & 12 other authors (1997). Ribotype delineation and description of Staphylococcus sciuri subspecies and their potential as reservoirs of methicillin resistance and staphylolytic enzyme genes. Int J Syst Bacterial 47,313-323.
40. Kohlbrecher, D., Eisermann, R. & Hengstenberg, W. (1992). Staphylococcal phosphoenolpyruvate-dependent phosphotransferase system: molecular cloning and nucleotide sequence of the Staphylococcus carnosits ptsl gene and expression and complementation studies of the gene product. J Bacterial 174, 2208-2214.
41. Kreutz, B. & Götz, F. (1984). Construction of Staphylococcus plasmid vector pCA43 conferring resistance to chloramphenicol, arsenate, arsenite and antimony. Gene 32, 301-304.
42. van Leeuwen, W., Sijmons, M., Sluijs, J., Verbrugh, H. & van Belkum, A. (1996). On the nature and use of randomly amplified DNA from Staphylococcus aureus. J Clin Microbiol 34, 2770-2777.
43. Liljeqvist, S., Samuelson, P., Hansson, M., Nguyen, T. N., Binz, H. & Ståhl, S. (1997). Surface display of the cholera toxin B subunit on Staphylococcus xylosus and Staphylococcus carnosus. Appl Em-iron Microbiol 63, 2481-2488.
44. Lina, B., Vandenesch, F., Etienne, J., Kreiswirth, B. & Fleurette, J. (1992). Comparison of coagulase-negative staphylococci by pulsed-field gel electrophoresis. FEMS Microbiol Lett 92, 133-138.
45. Linhardt, F., Ziebuhr, W., Meyer, P., Witte, W. & Hacker, J. (1992). Pulsed-field gel electrophoresis of genomic restriction fragments as a tool for the epidemiological analysis of Staphylococcus aureus and coagulase-negative staphylococci. FEMS Microbiol Lett 95, 181-186.
46. Logan, N. A. (1994). Bacterial Systematics. Oxford: Blackwell.
47. Lupski, J. R. & Weinstock, G. M. (1992). Short, interspersed repetitive DNA sequences in prokaryotic genomes. J Bacterial 174, 4525-4529.
48. Maniatis, T., Fritsch, E. F. & Sambrook, J. (1982). Molecular Cloning: a Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
49. Meens, J., Klose, R. & Freudel, R. (1994). The Staphylococcus carnosits secE gene : cloning, nucleotide sequence and functional characterization in Esclierichia coli sccE mutant strain. FEMS Aficrobiol Lett 117, 113-120.
50. Meugnier, H., Fernandez, M. P., Bes, M., Brun, Y., Bornstein, N., Freney, J. & Fleurette, J. (1993). rRNA gene restriction patterns as an epidemiological marker in nosocomial outbreaks of Staphylococcus aureus infections. Res Aficrobiol 144, 25-33.
51. Moschetti, G., Mauriello, G. & Villani, F. (1997). Differentiation of Staphylococcus xylosus strains from Italian sausages by antibiotyping and low frequency restriction fragment analysis of genomic DNA. Syst Appl Microbiol 20, 432-438.
52. Nei, M. & Li, W.-H. (1979). Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sei USA 76, 5269-5273.
53. Neubauer, H. & Götz, F. (1996). Physiology and interaction of nitrate and nitrite reduction in Staphylococcus carnosus. J Bacterial 178, 2005-2009.
54. Niinivaara, F. P. & Pohja, M. S. (1956). Über die Reifung der Rohwurst. I. Mitt: Die Veränderung der Bakterienflora während der Reifung. Z Lebensm-Uniers-Forsch 104, 413-422.
55. Nychas, G. J. & Arkoudelos, J. S. (1990). Staphylococci : their role in fermented sausages. J Appl Bacterial (Symp Suppl) 167S188S.
56. Pantůček, R., Götz, F., Doškǎr, J. & Rosypal, S. (1996). Genomic variability of Staphylococcus aureus and the other coagulasepositive Staphylococcus species estimated by macrorestriction analysis using pulsed-field gel electrophoresis. lut J Syst Bacterial 46, 216-222.
57. Pantůček, R., Rosypalová, A., Doškař, J., Kailerová, J., Růžičková, V., Borecká, P., Snopková, Š., Horváth, R., Götz, F. & Rosypal. S. (1998). The polyvalent staphylococcal phage φ812: its hostrange mutants and related phages. Virology 246, 241-252.
58. Popovic, T., Bopp, Ch. A., Orjan, O. & Kiehlbauch, J. A. (1993). Ribotyping in molecular epidemiology. In Diagnostic Molecular Microbiology. Principles and Applications, pp. 573-583. Edited by D. H. Persing, T. F. Smith, F. C. Tenover & T. J. White. Washington, DC: American Society for Microbiology.
59. Probst, A. J., Hertel, C., Richter, L., Wassili, L., Ludwig, W. & Hammes, W. P. (1998). Staphylococcus condiment i sp. nov., from soy sauce mash, and Staphylococcus carnosus (Schleifer and Fischer 1982) subsp. utilis subsp. nov. Int J Syst Bacterial 48, 651-658.
60. Pschorr, J., Bieseler, B. & Fritz, H. J. (1994). Production of the immunoglobulin variable domain REI(V) via a fusion protein synthesized and secreted by Staphylococcus carnosus. Biol Client Hoppe-Seyler 375, 271-280.
61. Robert, A., Samuelson, P., Andréoni, C., Bächi, T., Uhlén, M., Binz, H.. Nguyen. T. N. & Stähl, S. (1996). Surface display on Staphylococci: a comparative study. FEBS Lett 390, 327-333.
62. Rosenstein, R., Peschel, A., Wieland, B. & Götz, F. (1992). Expression and regulation of the antimonite, arsenite, and arsenate resistance operon of Staphylococcus xylosus plasmid pSX267. J Bacterial 174, 3676-3683.
63. Rosypal, S., Rosypalovâ, A. & Horejï, J. (1966). The classification of micrococci and Staphylococci based on their DNA base composition and Adansonian analysis. J Gen Aficrobiol 44, 281-292.
64. Samuelson, P., Hansson, M., Ahlborg, N., Andréoni, C, Götz, F., Bächi, T., Nguyen, T. N., Binz, H., Uhlén, M. & Stahl, S. (1995). Cell surface display of recombinant proteins on Staphylococcus carnosus. J Bacterial 177, 1470-1476.
65. Schleifer, K. H. & Fischer, U. (1982). Description of a new species of the genus Staphylococcus: Staphylococcus carnosits. Int J Syst Bacterial 32, 153-156.
66. Schleifer. K. H. & Kroppenstedt, R. M. (1990). Chemical and molecular classification of staphylococci. J Appl Bacterial (Symp Suppl) 9S-24S.
67. Silvestri, L. G. & Hill, L. R. (1965). Agreement between deoxyribonucleic acid base composition and taxometric classification of Gram-positive cocci. J Bacterial 90, 136-140.
68. Sneath, P. H. A. & Sokal, R. R. (1973). Numerical Taxonomy. The Principles and Practice of Numerical Classification. San Francisco: Freeman.
69. Snopková, Š., Gos̈tz. F., Došař, J. & Rosypal, S. (1994). Pulsed field gel electrophoresis of the genomic restriction fragments of coagulase-negative staphylococci. FEMS Microbiol Lett 124, 131-140.
70. Strauss, A. & Götz, F. (1996). In vivo immobilization of enzymically active polypeptides on the cell surface of Staphylococcus carnostis. Mol Microbiol 21, 491-500.
71. Struelens, M. J., Bax, R., Deplano, A., Quint, W. G. V. & van Belkum, A. (1993). Concordant clonal delineation of methicillinresistant Staphylococcus aureiis by macrorcstriction analysis and polymerase chain reaction genome fingerprinting. J Clin Microbiol 31, 1964-1970.
72. Tanasupawat, S., Hashimoto, Y., Ezaki, T., Kozaki, M. & Komagata, K. (1991). Identification of Staphylococcus carnosus strains from fermented fish and soy sauce mash. J Gen Appl Microbiol 37, 479-494.
73. Tanasupawat, S., Hashimoto, Y., Ezaki, T., Kozaki, M. & Komagata, K. (1992). Staphylococcus piscifermentans sp. nov., from fermented fish in Thailand. Int J Syst Bacterial 42, 577-581.
74. Tenover, F. C, Arbeit, R., Archer, G. & 15 other authors (1994). Comparison of traditional and molecular methods of typing isolates of Staphylococcus aureits. J Clin Microbiol 32,407-415.
75. Thumm, G. & Götz, F. (1997). Studies on prolysostaphin processing and characterization of the lysostaphin immunity factor (LiJ) of Staphylococcus simulons biovar staphylolyticus. Mol Microbiol 23, 1251-1265.
76. Upholt, W. B. (1977). Estimation of DNA sequence divergence from comparison of restriction endonuclease digests. Nucleic Acids Res 4, 1257-1265.
77. Versalovic, J., Koeuth, T. & Lupski, J. R. (1991). Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res 19, 6823-6831.
78. Wagner, E., DoSkar, J. & Götz, F. (1998). Physical and genetic map of the genome of Staphylococcus carnosus TM300. Microbiology 144, 509-517.
79. Wayne, L G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacterial 37, 463-464.
80. Webster, J. A., Bannerman, T. L, Hubner, R. J., Ballard, D. N., Cole, E. M., Bruce, J. L, Fiedler, F., Schubert, K. & Kloos, W. E. (1994). Identification of the Staphylococcus sciuri species group with EcoRl fragments containing rRNA sequences and description of Staphylococcus vilulus sp. nov. Int J Syst Bacterial 44, 454-460.
81. Wieland, B., Feil, C, Gloria-Maercker, E., Thumm, G., Lechner, M., Bravo, J.-M., Poralla, K. & Götz, F. (1994). Genetic and bio-chemical analyses of the biosynthesis of the yellow carotenoid 4,4′-diaponeurosporene of Staphylococcus aiireus. J Bacterial 176, 7719-7726.
82. Wieland, K.-P., Wieland, B. & Götz, F. (1995). A promoterscreening plasmid and xylose-inducible, glucose-repressible expression vectors for Staphylococcus carnosiis. Gene 158, 91-96.
83. Witke, C. & Götz, F. (1993). Cloning, sequencing, and characterization of the gene encoding the class-I fructose-1,6bisphosphate aldolase of Staphylococcits carnosus. J Bacterial 175, 7495-7499.
84. Witke, C. & Götz, F. (1995). Cloning and nucleotide sequence of the signal peptidase II (lsp)-gene from Staphylococcus carnosus. FEMS Microbiol Lett 126, 233-239.