Comparative analysis of the DRADA A-to-I RNA editing gene from mammals, pufferfish and zebrafish

Gene

Volumn 250, Issue 1-2, 2000, Pages 53-60

  Slavov, D ^a   Crnogorac Jurcevic T ^b   Clark, M ^c   Gardiner, K ^a  

^a UNIVERSITY OF DENVER   (United States)

^b IMPERIAL CANCER RESEARCH FUND   (United Kingdom)

^c MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

Author keywords

ADAR1; DRADA; Fugu rubripes; RNA editing; Zebrafish

Indexed keywords

ADENOSINE; ADENOSINE DEAMINASE; COMPLEMENTARY DNA; DNA Z; INOSINE; ISOENZYME; RNA EDITASE; UNCLASSIFIED DRUG;

ARTICLE; CONTROLLED STUDY; ENZYME ACTIVE SITE; ENZYME SPECIFICITY; EXON; FISH; GENE STRUCTURE; HUMAN; INTRON; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN RNA BINDING; RAT; RNA EDITING; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; ZEBRA FISH;

ADENOSINE DEAMINASE; AMINO ACID SEQUENCE; ANIMALS; CONSERVED SEQUENCE; DNA; DNA, COMPLEMENTARY; EXONS; FISHES; GENES; HUMANS; INTRONS; MAMMALS; MICE; MOLECULAR SEQUENCE DATA; RNA EDITING; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; ZEBRAFISH;

DANIO RERIO; MAMMALIA; TAKIFUGU; TAKIFUGU RUBRIPES; TETRAODON FLUVIATILIS; TETRAODONTIDAE;

EID: 0343963739     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(00)00175-X     Document Type: Article

References (22)

1. Burns C.M., Chu H., Rueter S.M., Hutchinson L.K., Canton H., Sanders-Bush E., Emeson R.B. Regulation of serotonin-2C receptor G-protein coupling by RNA editing. Nature. 387:1997;303-308.
2. Crnogorac-Jurčević T., Brown J.R., Lehrach H., Schalkwyk L.C. Tetraodon fluviatilis, a new puffer fish model for genome studies. Genomics. 41:1997;177-184.
3. Elgar G., Rattray F., Greystrong J., Brenner S. Genomic structure and nucleotide sequence of the p55 gene of the puffer fish, Fugu rubripes. Genomics. 27:1995;442-446.
4. Feinberg A.P., Vogelstein B. Addendum to a technique for radiolabeling DNA to high specific activity. Anal. Biochem. 137:1989;266-267.
5. Herbert A., Alfken J., Kim Y., Mian I.S., Nishikura K., Rich A. A Z-DNA binding domain present in the human editing enzyme, double-stranded RNA adenosine deaminase. Proc. Natl. Acad. Sci. USA. 94:1997;8421-8426.
6. Herbert A., Schade M., Lowenhaupt K., Alfken J., Schwartz T., Shlyakhtenko L.S., Lyubchenko Y.L., Rich A. The Z domain from human ADAR1 binds to the Z-DNA conformer of many different sequences. Nucleic Acids Res. 26:1998;3486-3493.
7. Kim Y.G., Lowenhaupt K., Schwartz T., Rich A. The interaction between Z-DNA and Zαβ domain of double-stranded RNA adenosine deaminase characterized using fusion nucleases. J. Biol. Chem. 274:1999;19 081-19 086.
8. Lai F., Drakas R., Nishikura K. Mutagenic analysis of double-stranded RNA adenosine deaminase, a candidate enzyme for RNA editing of glutamate-gated ion channel transcripts. J. Biol. Chem. 270:1995;17 098-17 105.
9. Lehrach H., Drmanac R., Hoheisel J., Larin Z., Lennon G., Monaco A.P., Nizetic D., Zehtner G., Poustka A. Hybridization fingerprinting in genome mapping and sequencing. Davies K.E., Tilghman S.M. Genome Analysis 1: Genetic and Physical Mapping. 1990;Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
10. Liu Y., Samuel C.E. Mechanism of interferon action: functionally distinct RNA-binding and catalytic domains in the interferon-inducible, double-stranded RNA-specific adenosine deaminase. J. Virol. 70:1996;1961-1968.
11. Liu Y., George C.X., Patterson J.B., Samuel C.E. Functionally distinct double-stranded RNA-binding domains associated with alternative splice site variants of the interferon-inducible double-stranded RNA-specific adenosine deaminase. J. Biol. Chem. 272:1997;4419-4428.
12. Liu Y., Emeson R.B., Samuel C.E. Serotonin-2C receptor pre-mRNA editing in rat brain and in vitro by splice site variants of the interferon-inducible double-stranded RNA-specific adenosine deaminase ADAR1. J. Biol. Chem. 274:1999;18 351-18 358.
13. Lomeli H., Mosbacher J., Melcher T., Hoger T., Geiger J.R.P., Kuner T., Monyer H., Higuchi M., Bach A., Seeburg P.H. Control of kinetic properties of AMPA receptor channels by nuclear RNA editing. Science. 266:1994;1709-1713.
14. Maas S., Melcher T., Seeburg P.H. Mammalian RNA-dependent deaminases and edited mRNAs. Curr. Opin. Cell. Biol. 9:1997;343-349.
15. Morse D.P., Bass B.L. Long RNA hairpins that contain inosine are present in Caenorhabditis elegans poly(A)+ RNA. Proc. Natl. Acad. Sci. USA. 96:1999;6048-6053.
16. Paschen, W., Djuricic, B., 1995. Regional differences in the extent of RNA editing of the.
17. Sambrook J., Fritsch E.F., Maniatis E. Molecular Cloning: A Laboratory Manual. second ed. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
18. Schwartz T., Lowenhaupt K., Kim Y.G., Li L., Brown B.A. II, Herbert A., Rich A. Proteolytic dissection of Zαβ, the Z-DNA binding domain of human ADAR1. J. Biol. Chem. 274:1999;2899-2906.
19. Seeburg P.H. The role of RNA editing in controlling glutamate receptor channel properties. J. Neurochem. 66:1996;1-6.
20. Slavov D., Clark M., Gardiner K. Comparative analysis of the RED1 and RED2 A-to-I RNA editing genes for mammals, pufferfish and zebrafish. Gene. 250:2000;41-51.
21. Villard L., Tassone F., Haymowicz M., Welborn R., Gardiner K. Map location, genomic organization and expression patterns of the human RED1 RNA editase. Somat. Cell Mol. Genet. 23:1997;135-145.
22. Wang Y., Zeng Y., Murray J.M., Nishikura K. Genomic organization and chromosomal location of the human dsRNA adenosine deaminase gene: the enzyme for glutamate-activated ion channel RNA editing. J. Mol. Biol. 254:1995;184-195.