Paralogous genes encoding transport proteins in microbial genomes

Research in Microbiology

Volumn 150, Issue 9-10, 1999, Pages 689-699

  Saier Jr, Milton H ^a   Paulsen, Ian T ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Evolution; Paralogue; Permease family; Superfamily; Transport protein

Indexed keywords

CARRIER PROTEIN; PERMEASE;

EVOLUTION; GENE TRANSFER; MICROBIAL GENETICS; MULTIGENE FAMILY; NONHUMAN; PRIORITY JOURNAL; PROTEIN FAMILY; REVIEW; SEQUENCE ANALYSIS;

PROKARYOTA;

EID: 0343384158     PISSN: 09232508     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0923-2508(99)00123-0     Document Type: Article

References (27)

1. Brown M.H., Paulsen I.T., Skurray R.A. The multidrug efflux protein NorM is a prototype of a new family of transporters. Mol. Microbiol. 31:1999;394-395.
2. Chang G., Spencer R.H., Lee A.T., Barclay M.T., Rees D.C. Structure of the MscL homolog from Mycobacterium tuberculosis: A gated mechanosensitive ion channel. Science. 282:1998;2220-2226.
3. Duboule D. The evolution of genomics (Editorial). Science. 278:1997;555.
4. Kane P.M. Vacuolar ATPases: Structure function assembly and biosynthesis. J. Bioenerg. Biomembr. 31:1999;1-83.
5. Koonin E.V., Tatusov R.L., Rudd K.E. Sequence similarity analysis of Escherichia coli proteins: Functional and evolutionary implications. Proc. Natl. Acad. Sci. USA. 92:1995;11921-11925.
6. Kuan G., Dassa E., Saurin W., Hofnung M., Saier M.H. Jr,. Phylogenetic analyses of the ATP-binding constituents of bacterial extracytoplasmic receptor-dependent ABC-type nutrient uptake permeases. Res. Microbiol. 146:1995;271-278.
7. Kuan J., Saier M.H. Jr,. The mitochondrial carrier family of transport proteins: Structural functional evolutionary relationships. Crit. Rev. Biochem. Mol. Biol. 28:1993;209-233.
8. Kuroda M., Dey S., Sanders O.I., Rosen B.P. Alternate energy coupling of ArsB the membrane subunit of the Ars anion-translocating ATPase. J. Biol. Chem. 272:1997;326-331.
9. Linton K.J., Higgins C.F. The Escherichia coli ATP-binding cassette (ABC) proteins. Mol. Microbiol. 28:1998;5-13.
10. Nguyen C.C., Saier M.H. Jr,. Phylogenetic structural and functional analyses of the LacI-GalR family of bacterial transcription factors. FEBS Lett. 377:1995;98-102.
11. Pao S.S., Paulsen I.T., Saier M.H. Jr,. Major facilitator superfamily. Microbiol. Mol. Biol. Rev. 62:1998;1-34.
12. Park J.H., Saier M.H. Jr,. Phylogenetic characterization of the MIP family of transmembrane channel proteins. J. Membr. Biol. 153:1996;171-180.
13. Paulsen I.T., Sliwinski M.K., Saier M.H. Jr,. Microbial genome analyses: Global comparisons of transport capabilities based on phylogenies bioenergetics and substrate specificities. J. Mol. Biol. 277:1998;573-592.
14. Paulsen I.T., Sliwinski M.K., Nelissen B., Goffeau A., Saier M.H. Jr,. Unified inventory of established and putative transporters encoded within the complete genome of Saccharomyces cerevisiae. FEBS Lett. 430:1998;116-125.
15. Reizer J., Saier M.H. Jr,. Modular multidomain phosphoryl transfer proteins of bacteria. Curr. Opin. Struct. Biol. 7:1997;407-415.
16. Saier M.H. Jr,. Computer-aided analyses of transport protein sequences: Gleaning evidence concerning function structure biogenesis evolution. Microbiol. Rev. 58:1994;71-93.
17. Saier M.H. Jr,. Phylogenetic approaches to the identification and characterization of protein families and superfamilies. Microb. Comp. Genomics. 1:1996;129-150.
18. Saier M.H. Jr,. Molecular phylogeny as a basis for the classification of transport proteins from bacteria archaea and eukarya. Poole R.K. Advances in Microbial Physiology. 1998;81-136 Academic Press, San Diego, CA.
19. Saier M.H. Jr,. Classification of transmembrane transport systems in living organisms. Van Winkle L. Biomembrane Transport. 1999;265-276 Academic Press, San Diego, CA.
20. Saier M.H. Jr,. Eukaryotic transmembrane solute transport systems. Jeon K.W. International Review of Cytology: A Survey of Cell Biology. 1999;61-136 Academic Press, San Diego, CA.
21. Saier M.H. Jr, Reizer J. The bacterial phosphotransferase system: New frontiers 30 years later. Mol. Microbiol. 13:1994;755-764.
22. Sansom M.S.P. Ion channels: A first view of K+ channels in atomic glory. Curr. Biol. 8:1998;R450-R452.
23. Saurin W., Hofnung M., Dassa E. Going in or getting out, A phylogenetic analysis of ATP-binding proteins of ABC transporters. J. Mol. Evol. 48:1999;22-41.
24. Tatusov R.L., Koonin E.V., Lipman D.J. A genomic perspective on protein families. Science. 278:1997;631-637.
25. Terlau H., Stühmer W. Structure and function of voltage-gated ion channels. Naturwissenschaften. 85:1998;437-444.
26. Tomii K., Kanehisa M. A comparative analysis of ABC transporters in complete microbial genomes. Genome Res. 8:1998;1048-1059.
27. Tseng T.T., Gratwick K.S., Kollman J., Park D., Nies D.H., Goffeau A., Saier M.H. Jr,. The RND permease superfamily: An ancient ubiquitous and diverse family that includes human disease and development proteins. J. Mol. Microbiol. Biotechnol. 1:1999;107-125.