Correction of the DNA sequence of the regB gene of Rhodobacter capsulatus with implications for the membrane topology of the sensor kinase RegB

Journal of Bacteriology

Volumn 182, Issue 3, 2000, Pages 818-820

  Chen, Weizhen ^a   Jäger, Andreas ^a   Klug, Gabriele ^a,b  

^a Institut fur Mikrobiologie und Molekularbiologie   (Germany)

^b UNIVERSITY HOSPITAL GIESSEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

HYBRID PROTEIN; PROTEIN HISTIDINE KINASE;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIAL MEMBRANE; DNA SEQUENCE; ENZYME LOCALIZATION; GENE EXPRESSION REGULATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DOMAIN; REGULATOR GENE; RHODOBACTER; RHODOBACTER CAPSULATUS;

ALKALINE PHOSPHATASE; AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CELL MEMBRANE; CYCLIN-DEPENDENT KINASES; LAC OPERON; MOLECULAR SEQUENCE DATA; PHOTOSYNTHETIC REACTION CENTER COMPLEX PROTEINS; PROTEIN KINASES; PROTEIN STRUCTURE, SECONDARY; RECOMBINANT FUSION PROTEINS; RHODOBACTER CAPSULATUS;

EID: 0342948902     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.182.3.818-820.2000     Document Type: Article

References (27)

1. Barany, F. 1985. Two-codon insertion mutagenesis of plasmid genes by using single-stranded hexameric oligonucleotides. Proc. Natl. Acad. Sci. USA 82: 4202-4206.
2. Bauer, C. E. 1995. Regulation of photosynthesis gene expression, p. 1221-1234. In R. E. Blankenship, M. T. Madigan, and C. E. Bauer (ed.), Anoxygenic photosynthetic bacteria. Kluwer Academic Publishers, Dordrecht, The Netherlands.
3. Bauer, C. E., and T. H. Bird. 1996. Regulatory circuits controlling photosynthesis gene expression. Cell 85:5-8.
4. Brickman, E., and J. Beckwith. 1975. Analysis of the regulation of Escherichia coli alkaline phosphatase synthesis using deletions and phi80 transducing phages. J. Mol. Biol. 96:307-316.
5. Casadaban, M. J., and S. N. Cohen. 1980. Analysis of gene control signals by DNA fusion and cloning in Escherichia coli. J. Mol. Biol. 138:179-207.
6. Drews, G., and J. F. Imhoff. 1991. Phototrophic purple bacteria, p. 51-97. In J. M. Shively and L. L. Barton (ed.), Variations in autotrophic life. Academic Press Ltd., New York, N.Y.
7. Du, S., T. H. Bird, and C. E. Bauer. 1998. DNA binding characteristics of RegA. A constitutively active anaerobic activator of photosynthesis gene expression in Rhodobacter capsulatus. J. Biol. Chem. 273:18509-18513.
8. Ehrmann, M., D. Boyd, and J. Beckwith. 1990. Genetic analysis of membrane protein topology by a sandwich gene fusion approach. Proc. Natl. Acad. Sci. USA 87:7574-7578.
9. Eraso, J. M., and S. Kaplan. 1995. Oxygen-insensitive synthesis of the photosynthetic membranes of Rhodobacter sphaeroides: a mutant histidine kinase. J. Bacteriol. 177:2695-2706.
10. Fariselli, P., and R. Casadio. 1995. Transmembrane helices predicted at 95% accuracy. Protein Sci. 4:521-533.
11. Hemschemeier, S. K., M. Kirndörfer, U. Ebel, and G. Klug. 1999. Transcriptional regulation of puf and puc expression in Rhodobacter capsulatus by the DNA binding protein RegA, p. 127-130. In G. A. Peschek, W. Löffelhardt, and G. Schmetterer (ed.), The phototrophic procaryotes. Plenum Press, New York, N.Y.
12. Hübner, P., J. C. Willison, P. M. Vignais, and T. A. Bickle. 1991. Expression of regulatory nif genes in Rhodobacter capsulatus. J. Bacteriol. 173:2993-2999.
13. Inoue, K., J. K. Kouadio, C. S. Mosley, and C. E. Bauer. 1995. Isolation and in vitro phosphorylation of sensory transduction components controlling anaerobic induction of light harvesting and reaction center gene expression in Rhodobacter capsulatus. Biochemistry 34:391-396.
14. Juretic, D., D. Zucic, B. Lucic, and N. Trinajstic. 1998. Preference functions for prediction of membrane-buried helices in integral membrane proteins. Comput. Chem. 4:279-294.
15. Keen, N. T., S. Tamaki, D. Kobayashi, and D. Trollinger. 1988. Improved broad-host-range plasmids for DNA cloning in Gram-negative bacteria. Gene 70:191-197.
16. Kirndörfer, M., A. Jäger, and G. Klug. 1998. Integration host factor affects the oxygen-regulated expression of photosynthesis genes in Rhodobacter capsulatus. Mol. Gen. Genet. 258:297-305.
17. Klug, G., and G. Drews. 1984. Construction of a gene bank of Rhodopseudomonas capsulata using a broad host range cloning system. Arch. Microbiol. 139:319-325.
18. Kyte, J., and R. F. Doolittle. 1982. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157:105-132.
19. Manoil, C. 1990. Analysis of protein localization by use of gene fusions with complementary properties. J. Bacteriol. 172:1035-1042.
20. Marrs, B. 1981. Mobilization of the genes for photosynthesis from Rhodopseudomonas capsulata by a promiscuous plasmid. J. Bacteriol. 146:1003-1012.
21. Miller, J. H. 1972. Experiments in molecular genetics, p. 352-355. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
22. Mosley, C. S., J. Y. Suzuki, and C. E. Bauer. 1994. Identification and molecular genetic characterization of a sensor kinase responsible for coordinately regulating light harvesting and reaction center gene expression in response to anaerobiosis. J. Bacteriol. 176:7566-7573.
23. Ouchane, S., and S. Kaplan. 1999. Topology analysis of the membrane-localized redox-responsive sensor kinase PrrB from Rhodobacter sphaeroides 2.4.1. J. Biol. Chem. 274:17290-17296.
24. 12) synthesis in Rhodobacter capsulatus. J. Bacteriol. 177:4481-4487.
25. Takatsugu, H., S. Boon-Chieng, and S. Mitaku. 1998. SOSUI: classification and secondary structure prediction system for membrane proteins. Bioinformatics 14:378-379.
26. Tusnády, G. E., and I. Simon. 1998. Principles governing amino acid composition of integral membrane proteins: application to topology prediction. J. Mol. Biol. 283:489-506.
27. von Heijne, G. 1992. Membrane protein structure prediction, hydrophobicity analysis and the positive-inside rule. J. Mol. Biol. 255:487-494.