Bacteriorhodopsin as a chemical and biological sensor

Proceedings of SPIE - The International Society for Optical Engineering

Volumn 5085, Issue , 2003, Pages 109-118

  Heeg, B ^a   Needleman, R ^b   Khizhnyak, A ^a   L'Esperance, D ^a   Scott, E ^a   Markov, V ^a   Trolinger, J D ^a  

^a METROLASER INC   (United States)

^b WAYNE STATE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; BIOLOGICAL MEMBRANES; CHEMICAL SENSORS; FLUORESCENCE; MUTAGENESIS; TUMORS;

CANCER CELLS;

PROTEINS;

EID: 0242635679     PISSN: 0277786X     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1117/12.488595     Document Type: Conference Paper

References (29)

1. R. R. Birge, "Protein Based Computers" Scientific American, 90 p. 272, (1995).
2. D. Oesterhelt, C. Bräuchle, and N. Hampp, "Bacteriorhodopsin: a biological material for information processing", Biophysics 24, 425 (1991).
3. J.D. De-la-Llave, D.A. Pommet, and M.A. Fiddy, "Novel joint transform correlator architecture using bacteriorhodopsin optically addressable spatial light modulators", Optical Engineering 37, 27 (1998).
4. L.R. Lindvold, H. Lausen, "Projection display based on an optically addressed spatial light modulator using a bacteriorhodopsin thin film as a photochromic material", SPIE 3013, 202 (1997).
5. H. Takei and N. Shimizu, "Spatial light modulation based on photo-induced change in the complex refractive index of bacteriorhodopsin", Appl. Opt. 35, 1848 (1996).
6. D.Y. Zang, J.E. Millerd, D. Smithey, "Asymmetric, reflection mode nonlinear Fabry-Perot modulator using bacteriorhodopsin", Appl. Phys. Lett. 69, 3143 (1998).
7. D. Sanchez, D.A. Pommet, and M.A. Fiddy, "Compact optical correlator for machine vision with optically addressed bacteriorhodopsin spatial light modulator", SPIE 2908 198 (1996).
8. R. Thoma and N. Hampp, "Adaptive bacteriorhodopsin-based holographic correlator for speed measurement of randomly moving three-dimensional objects", Opt. Lett. 19, 1364 (1994).
9. D. Zeisel and N. Hampp, "Dynamic self-pumped phase-conjugating mirror based on the bacteriorhodopsin variant D96N", Opt. Lett. 19, 1412 (1994).
10. A. Kikineshy, Z. Bathory-Tarczy, I. Rosola, and J. Sharkany, "Materials and devices for fiber optic sensors", Proceedings of NATO Advanced Workshop on Multichip Modules with Integrated Sensors, Budapest, Hungary, 18-20 May 1995, pp. 181-4, eds. K.W. Jones and G. Harsanyi, Kluwer Academic Publishers, Dordrecht, Netherlands, 1996.
11. A.S. Bablumian, T.F. Krile, D.J. Mehrl, J.F. Walkup, "Recording shift-selective volume holograms in bacteriorhodopsin", SPIE 3159, 230 (1997).
12. J.D. Downie, "Optical processing of speckle images with bacteriorhodopsin for pattern recognition", Optics and Lasers in Engineering 23, 121 (1995).
13. N. Hampp, and D. Zeisel, "Mutated bacteriorhodopsins-versatile media in optical image processing", IEEE Engineering in Medicine and Biology Magazine 13, 67 (1994).
14. H. Rajbenbach, "Dynamic holography in optical pattern recognition", SPIE 2237, 329 (1994).
15. D. Oesterhelt, C. Bräuchle, and N. Hampp, "Bacteriorhodopsin: a biological material for information processing", Q. Rev. Biophys. 24, 425 (1991).
16. A.S. Bablumian, T.F. Krile, D.J. Mehrl, and J.F. Walkup, "M-type thick holograms in bacteriorhodopsin film with a high-divergence reference beam", Appl. Opt. 37, 1350 (1998).
17. C. Wang, M. Bacon, A.K. Kar, B.S. Wherrett, and R.L. Baxter, "Characterization of long M-state lifetime bacteriorhodopsin thin films for optical cache memory", Japanese Journal of Applied Physics 36, 439 (1997).
18. C. Bräuchle, N. Hampp, and D. Oesterhelt, "Optical Applications of Bacteriorhodopsin and its Mutated Variants", Adv. Mat. 3, 420 (1991).
19. A. Hafiz, R. Magnusson, J.S. Bagby, D.R. Wilson, and T.D. Black, "Visualization of aerodynamic flowfields using photorefractive crystals", Appl. Opt. 28, 1521 (1989).
20. A. Popp, M. Wolperdinger, N. Hampp, C. Bräuchle, and D. Oesterhelt, "Photochemical conversion of the O-intermediate to 9-cis-retinal containing products in bacteriorhodopsin films." Biophysical Journal 65, 1449 (1993).
21. A.Lal, A.Rohtbacher, V.Markov, J.Millerd, J.Trolinger Characterization of the bacteriorhodopsin gelatin films used for optical data storage in image processing Proc. SPIE, v. 3793, pp. 103-122, 1999
22. F.H. Mok, "Angle-multiplexed storage of 5000 holograms in lithium niobate", Opt. Lett. 18, 915 (1993).
23. Birge, R.R., Einterz, C.M., Knapp, H.M., Murray, L.P., "The Nature of the Primary Photochemical Events in Rhodopsin and Isorhodopsin", Biophysical Journal, 53, 367-85 (1988).
24. Luecke, H., Richter, H.T., and Lanyi, J.K., "Proton Transfer Pathways in Bacteriorhodopsin at 2.4 Angstrom Resolution" Science, 280, 1934, (1998).
25. Brown, L.S, Yamazaki, Y., Maeda, A., Sun, L., Needleman, R., and Lanyi, J.K., "Proton Transfer Near the Cytoplasmic Surface of Bacteriorhodopsin is Facilitated by a Cluster of Interacting Residues", J. Mol. Biol. 239, 401-414, (1994).
26. Brown, L.S, Varo, G., Hataaka, M., Sasaki, J., Kandori, H., Maeda, A., Sheves, M., Needleman, R., and Lanyi, J.K., "The Complex Extracellular Domain Regulates the Deprotonation and Reprotonation of the Retinal Schiff Base During the Bacteriorhodopsin Photocycle", Biochemistry 34, 12903-12911, (1995).
27. Ni, B., Chang, M., Dusch, A., Lanyi, J.K., and Needleman, R., "An Efficient System for the Synthesis of Bacteriorhodopsin in H. halobium", Gene, 90, 169, (1990).
28. Needleman R, Chang M, Ni B, Varo G, Fornes J, White SH, Lanyi JK., "Properties of Asp212→ Asn bacteriorhodopsin suggest that Asp212 and Asp85 both participate in a counter-ion and proton acceptor complex near the Schiff base", J. Biol. Chem, 266, 11478-84 (1991).
29. Brown, L.S., Varo, G., Needleman, R., Lanyi, J.K., "Functional Significance of a Protein Conformation Change at the Cytoplasmic End of Helix F During the Bacteriorhodopsin Photocycle", Biophysical Journal 69, 2103-2111, (1995).