메뉴 건너뛰기




Volumn 10, Issue 3-4, 2003, Pages 419-432

Natural Selection and Algorithmic Design of mRNA

Author keywords

Molecular design; Natural selection; RNA secondary structure; RNA stability; Synonymous coding sequence

Indexed keywords

ARGININE; MESSENGER RNA; TRYPTOPHAN;

EID: 0242606472     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/10665270360688101     Document Type: Conference Paper
Times cited : (29)

References (27)
  • 2
    • 0030793767 scopus 로고    scopus 로고
    • De novo protein design: Fully automated sequence selection
    • Dahiyat, B.I., and Mayo, S.L. 1997. De novo protein design: Fully automated sequence selection. Science 278, 82-87.
    • (1997) Science , vol.278 , pp. 82-87
    • Dahiyat, B.I.1    Mayo, S.L.2
  • 5
    • 0034736520 scopus 로고    scopus 로고
    • Chargaff's legacy
    • Forsdyke, D.R., and Mortimer, J.R. 2000. Chargaff's legacy. Gene 261, 127-137.
    • (2000) Gene , vol.261 , pp. 127-137
    • Forsdyke, D.R.1    Mortimer, J.R.2
  • 6
    • 0003604405 scopus 로고    scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Gesteland, R.F., Cech, T.R., and Atkins J.F., ed. 1999. The RNA World, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1999) The RNA World
    • Gesteland, R.F.1    Cech, T.R.2    Atkins, J.F.3
  • 7
    • 84963017652 scopus 로고
    • Normal recurring decimals
    • Good, I.J. 1946. Normal recurring decimals. J. London Math. Soc. 21, 167-172.
    • (1946) J. London Math. Soc. , vol.21 , pp. 167-172
    • Good, I.J.1
  • 9
    • 0034666387 scopus 로고    scopus 로고
    • Gradients in nucleotide and codon usage along Escherichia coli genes
    • Hooper, S.D., and Berg, O.G. 2000. Gradients in nucleotide and codon usage along Escherichia coli genes. Nucl. Acids. Res. 28, 3517-3522.
    • (2000) Nucl. Acids Res. , vol.28 , pp. 3517-3522
    • Hooper, S.D.1    Berg, O.G.2
  • 10
    • 0345005029 scopus 로고
    • Improved predictions of secondary structures for RNA
    • Jaeger, J., Turner, D.H., and Zuker, M. 1989. Improved predictions of secondary structures for RNA. Proc. Natl. Acad. Sci. USA 86, 7706-7710.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 7706-7710
    • Jaeger, J.1    Turner, D.H.2    Zuker, M.3
  • 15
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters provides robust prediction of RNA secondary structure
    • Mathews, D.H., Sabina, J., Zuker, M., and Turner, D.H. 1999. Expanded sequence dependence of thermodynamic parameters provides robust prediction of RNA secondary structure. J. Mol. Biol. 288, 911-940.
    • (1999) J. Mol. Biol. , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 17
    • 0018604501 scopus 로고
    • Attenuation in the Escherichia coli tryptophan operon: Role of RNA secondary structure involving the tryptophan codon region
    • Oxender, D.L., Zurawski, G., and Yanofsky, C. 1979. Attenuation in the Escherichia coli tryptophan operon: Role of RNA secondary structure involving the tryptophan codon region. Proc. Natl. Acad. Sci. USA 76, 5524-5528.
    • (1979) Proc. Natl. Acad. Sci. USA , vol.76 , pp. 5524-5528
    • Oxender, D.L.1    Zurawski, G.2    Yanofsky, C.3
  • 18
    • 0021760007 scopus 로고
    • An energy model that predicts the correct folding of both the tRNA and the 5S RNA molecules
    • Papanicolaou, C., Gouy, M., and Ninio, J. 1984. An energy model that predicts the correct folding of both the tRNA and the 5S RNA molecules. Nucl. Acids Res., 12.
    • (1984) Nucl. Acids Res. , pp. 12
    • Papanicolaou, C.1    Gouy, M.2    Ninio, J.3
  • 19
    • 0033119454 scopus 로고    scopus 로고
    • mRNAs have greater negative folding free energies than shuffled or codon choice randomized sequences
    • Seffens, W., and Digby, D. 1999. mRNAs have greater negative folding free energies than shuffled or codon choice randomized sequences. Nucl. Acids. Res. 27, 1578-158.
    • (1999) Nucl. Acids Res. , vol.27 , pp. 1578-2158
    • Seffens, W.1    Digby, D.2
  • 22
    • 0005822936 scopus 로고
    • Improved estimation of secondary structure in ribonucleic acids
    • Tinoco, Jr., I., Borer, P.N., Dnegler, B., and Levine, M.D. 1973. Improved estimation of secondary structure in ribonucleic acids. Nat. New Biol., 246, 40-41.
    • (1973) Nat. New Biol. , vol.246 , pp. 40-41
    • Tinoco I., Jr.1    Borer, P.N.2    Dnegler, B.3    Levine, M.D.4
  • 23
    • 0034736513 scopus 로고    scopus 로고
    • Consensus temporal order of amino acids and evolution of the triplet code
    • Trifonov, E.N. 2000. Consensus temporal order of amino acids and evolution of the triplet code. Gene 261, 139-151.
    • (2000) Gene , vol.261 , pp. 139-151
    • Trifonov, E.N.1
  • 25
    • 0033572893 scopus 로고    scopus 로고
    • No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution
    • Workman, C., and Krogh, A. 1999. No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution. Nucl. Acids. Res. 27, 4816-4822.
    • (1999) Nucl. Acids Res. , vol.27 , pp. 4816-4822
    • Workman, C.1    Krogh, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.