Protein and antibody microarray technology

Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences

Volumn 797, Issue 1-2, 2003, Pages 229-240

  Glökler, Jörn ^a   Angenendt, Philipp ^a  

^a MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

Author keywords

Antibodies; Microarray technologies; Proteins; Proteomics; Review

Indexed keywords

CHROMATOGRAPHIC ANALYSIS; DNA; ELECTROPHORESIS; GENES; MASS SPECTROMETRY; PURIFICATION; SEPARATION;

MICROARRAY TECHNOLOGY;

ANTIBODIES;

ANTIBODY; ANTIPARASITIC AGENT; IVERMECTIN; PROTEIN;

ACCURACY; ANALYTIC METHOD; ANTIBODY LABELING; AUTOIMMUNE DISEASE; CANCER DIAGNOSIS; DIAGNOSTIC PROCEDURE; DISEASE MARKER; DNA FINGERPRINTING; DNA MICROARRAY; DRUG DETERMINATION; DRUG LIVER LEVEL; GENE EXPRESSION; GENETIC PROCEDURES; HUMAN; MASS SPECTROMETRY; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; PROTEIN PURIFICATION; PROTEOMICS; REVIEW; TWO DIMENSIONAL GEL ELECTROPHORESIS;

EID: 0242579852     PISSN: 15700232     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jchromb.2003.08.034     Document Type: Review

References (110)

1. Gygi S.P., Rochon Y., Franza B.R., Aebersold R. Mol. Cell Biol. 19:1999;1720.
2. Anderson L., Seilhamer J. Electrophoresis. 18:1997;533.
3. Klose J. Humangenetik. 26:1975;231.
4. O'Farrell P.H. J. Biol. Chem. 250:1975;4007.
5. Harrington M.G., Lee K.H., Yun M., Zewert T., Bailey J.E., Hood L. Appl. Theor. Electrophor. 3:1993;347.
6. Langen H., Roder D., Juranville J.F., Fountoulakis M. Electrophoresis. 18:1997;2085.
7. Gorg A., Obermaier C., Boguth G., Weiss W. Electrophoresis. 20:1999;712.
8. Wildgruber R., Harder A., Obermaier C., Boguth G., Weiss W., Fey S.J., Larsen P.M., Gorg A. Electrophoresis. 21:2000;2610.
9. Fivaz M., Vilbois F., Pasquali C., van der Goot F.G. Electrophoresis. 21:2000;3351.
10. Lehr S., Kotzka J., Knebel B., Schiller M., Krone W., Muller-Wieland D. Proteomics. 2:2002;280.
11. Wandschneider S., Fehring V., Jacobs-Emeis S., Thiesen H.J., Lohr M. Electrophoresis. 22:2001;4383.
12. Taniguchi N., Ekuni A., Ko J.H., Miyoshi E., Ikeda Y., Ihara Y., Nishikawa A., Honke K., Takahashi M. Proteomics. 1:2001;239.
13. Sarioglu H., Lottspeich F., Walk T., Jung G., Eckerskorn C. Electrophoresis. 21:2000;2209.
14. Kaufmann H., Bailey J.E., Fussenegger M. Proteomics. 1:2001;194.
15. Lilley K.S., Razzaq A., Dupree P. Curr. Opin. Chem. Biol. 6:2002;46.
16. Lopez M.F. Electrophoresis. 21:2000;1082.
17. Gygi S.P., Corthals G.L., Zhang Y., Rochon Y., Aebersold R. Proc. Natl. Acad. Sci. U.S.A. 97:2000;9390.
18. Corthals G.L., Wasinger V.C., Hochstrasser D.F., Sanchez J.C. Electrophoresis. 21:2000;1104.
19. Schutt F., Ueberle B., Schnolzer M., Holz F.G., Kopitz J. FEBS Lett. 528:2002;217.
20. Hoving S., Voshol H., van Oostrum J. Electrophoresis. 21:2000;2617.
21. Hoving S., Gerrits B., Voshol H., Muller D., Roberts R.C., van Oostrum J. Proteomics. 2:2002;127.
22. Santoni V., Kieffer S., Desclaux D., Masson F., Rabilloud T. Electrophoresis. 21:2000;3329.
23. Molloy M.P., Phadke N.D., Chen H., Tyldesley R., Garfin D.E., Maddock J.R., Andrews P.C. Proteomics. 2:2002;899.
24. Patton W.F. J. Chromatogr. B Biomed. Sci. Appl. 722:1999;203.
25. Link A.J., Eng J., Schieltz D.M., Carmack E., Mize G.J., Morris D.R., Garvik B.M., Yates J.R. III Nat. Biotechnol. 17:1999;676.
26. Madoz-Gurpide J., Wang H., Misek D.E., Brichory F., Hanash S.M. Proteomics. 1:2001;1279.
27. Gygi S.P., Rist B., Gerber S.A., Turecek F., Gelb M.H., Aebersold R. Nat. Biotechnol. 17:1999;994.
28. Ochi H., Horiuchi I., Araki N., Toda T., Araki T., Sato K., Murai H., Osoegawa M., Yamada T., Okamura K., Ogino T., Mizumoto K., Yamashita H., Saya H., Kira J. FEBS Lett. 528:2002;197.
29. Gehanne S., Cecconi D., Carboni L., Righetti P.G., Domenici E., Hamdan M. Rapid Commun. Mass Spectrom. 16:2002;1692.
30. Chivasa S., Ndimba B.K., Simon W.J., Robertson D., Yu X.L., Knox J.P., Bolwell P., Slabas A.R. Electrophoresis. 23:2002;1754.
31. Karas M., Hillenkamp F. Anal. Chem. 60:1988;2299.
32. Hunt D.F., Henderson R.A., Shabanowitz J., Sakaguchi K., Michel H., Sevilir N., Cox A.L., Appella E., Engelhard V.H. Science. 255:1992;1261.
33. Giorgianni F., Desiderio D.M., Beranova-Giorgianni S. Electrophoresis. 24:2003;253.
34. Fenn J.B., Mann M., Meng C.K., Wong S.F., Whitehouse C.M. Science. 246:1989;64.
35. Choudhary J.S., Blackstock W.P., Creasy D.M., Cottrell J.S. Trends Biotechnol. 19:2001;S17.
36. Robinson W.H., DiGennaro C., Hueber W., Haab B.B., Kamachi M., Dean E.J., Fournel S., Fong D., Genovese M.C., de Vegvar H.E., Skriner K., Hirschberg D.L., Morris R.I., Muller S., Pruijn G.J., van Venrooij W.J., Smolen J.S., Brown P.O., Steinman L., Utz P.J. Nat. Med. 8:2002;295.
37. P. Angenendt, J. Glökler, in: E. Fung (Ed.), Methods in Molecular Biology, The Humana Press, Totowa, NJ, 2002, submitted for publication.
38. Krebs B., Rauchenberger R., Reiffert S., Rothe C., Tesar M., Thomassen E., Cao M., Dreier T., Fischer D., Hoss A., Inge L., Knappik A., Marget M., Pack P., Meng X.Q., Schier R., Sohlemann P., Winter J., Wolle J., Kretzschmar T. J. Immunol. Methods. 254:2001;67.
39. Casey J.L., Keep P.A., Chester K.A., Robson L., Hawkins R.E., Begent R.H. J. Immunol. Methods. 179:1995;105.
40. He M., Taussig M.J. Nucleic Acids Res. 25:1997;5132.
41. Hanes J., Schaffitzel C., Knappik A., Pluckthun A. Nat. Biotechnol. 18:2000;1287.
42. Barrick J.E., Takahashi T.T., Balakin A., Roberts R.W. Methods. 23:2001;287.
43. Hansson M., Ringdahl J., Robert A., Power U., Goetsch L., Nguyen T.N., Uhlen M., Stahl S., Nygren P.A. Immunotechnology. 4:1999;237.
44. Koide A., Bailey C.W., Huang X., Koide S. J. Mol. Biol. 284:1998;1141.
45. Beste G., Schmidt F.S., Stibora T., Skerra A. Proc. Natl. Acad. Sci. U.S.A. 96:1999;1898.
46. Forrer P., Stumpp M.T., Binz H.K., Pluckthun A. FEBS Lett. 539:2003;2.
47. Schneider D., Gold L., Platt T. FASEB. J. 7:1993;201.
48. Hochuli E., Dobeli H., Schacher A. J. Chromatogr. 411:1987;177.
49. Mukhija R., Rupa P., Pillai D., Garg L.C. Gene. 165:1995;303.
50. Joshi B., Janda L., Stoytcheva Z., Tichy P. Microbiology. 146:2000;3259.
51. Negro A., Onisto M., Masiero L., Garbisa S. FEBS Lett. 360:1995;52.
52. Zahn R., von Schroetter C., Wuthrich K. FEBS Lett. 417:1997;400.
53. Bussow K., Nordhoff E., Lubbert C., Lehrach H., Walter G. Genomics. 65:2000;1.
54. Voss S., Skerra A. Protein Eng. 10:1997;975.
55. Stofko-Hahn R.E., Carr D.W., Scott J.D. FEBS Lett. 302:1992;274.
56. Chong S., Mersha F.B., Comb D.G., Scott M.E., Landry D., Vence L.M., Perler F.B., Benner J., Kucera R.B., Hirvonen C.A., Pelletier J.J., Paulus H., Xu M.Q. Gene. 192:1997;271.
57. Smith D.B., Johnson K.S. Gene. 67:1988;31.
58. di Guan C., Li P., Riggs P.D., Inouye H. Gene. 67:1988;21.
59. Dickason R.R., Edwards R.A., Bryan J., Huston D.P. J. Immunol. Methods. 185:1995;237.
60. Braun P., Hu Y., Shen B., Halleck A., Koundinya M., Harlow E., LaBaer J. Proc. Natl. Acad. Sci. U.S.A. 99:2002;2654.
61. Boettner M., Prinz B., Holz C., Stahl U., Lang C. J. Biotechnol. 99:2002;51.
62. Holz C., Hesse O., Bolotina N., Stahl U., Lang C. Protein Exp. Purif. 25:2002;372.
63. Allen S.V., Miller E.S. Anal. Biochem. 269:1999;32.
64. He M., Taussig M.J. Nucleic Acids Res. 29:2001;E73.
65. Ge H. Nucleic Acids Res. 28:2000;e3.
66. Lueking A., Horn M., Eickhoff H., Büssow K., Lehrach H., Walter G. Anal. Biochem. 270:1999;103.
67. Mendoza L.G., McQuary P., Mongan A., Gangadharan R., Brignac S., Eggers M. Biotechniques. 27:1999;778.
68. de Wildt R.M., Mundy C.R., Gorick B.D., Tomlinson I.M. Nat. Biotechnol. 18:2000;989.
69. MacBeath G., Schreiber S.L. Science. 289:2000;1760.
70. B.B. Haab, M.J. Dunham, P.O. Brown, Genome Biol. 2 (2001) RESEARCH0004.
71. Angenendt P., Glökler J., Murphy D., Lehrach H., Cahill D.J. Anal. Biochem. 309:2002;253.
72. Arenkov P., Kukhtin A., Gemmell A., Voloshchuk S., Chupeeva V., Mirzabekov A. Anal. Biochem. 278:2000;123.
73. Angenendt P., Glökler J., Sobek J., Lehrach H., Cahill D.J. J. Chromatogr. A. 1009:2003;97.
74. Kusnezow W., Jacob A., Walijew A., Diehl F., Hoheisel J.D. Proteomics. 3:2003;254.
75. Zhu H., Klemic J.F., Chang S., Bertone P., Casamayor A., Klemic K.G., Smith D., Gerstein M., Reed M.A., Snyder M. Nat. Genet. 26:2000;283.
76. Xia Y., Kim E., Zhao X.M., Rogers J.A., Prentiss M., Whitesides G.M. Science. 273:1996;347.
77. Biran I., Walt D.R. Anal. Chem. 74:2002;3046.
78. Bernhard D.D., Mall S., Pantano P. Anal. Chem. 73:2001;2484.
79. Cohen C.B., Chin-Dixon E., Jeong S., Nikiforov T.T. Anal. Biochem. 273:1999;89.
80. Hadd A.G., Raymond D.E., Halliwell J.W., Jacobson S.C., Ramsey J.M. Anal. Chem. 69:1997;3407.
81. Hutchens T.W., Yip T.-T. Rapid Comm. Mass Spectrom. 7:1993;576.
82. Malmqvist M., Karlsson R. Curr. Opin. Chem. Biol. 1:1997;378.
83. Angenendt P., Glökler J., Konthur Z., Lehrach H., Cahill D.J. Anal. Chem. 75:2003;4368.
84. Issaq H.J., Conrads T.P., Janini G.M., Veenstra T.D. Electrophoresis. 23:2002;3048.
85. Joos T.O., Schrenk M., Hopfl P., Kroger K., Chowdhury U., Stoll D., Schorner D., Durr M., Herick K., Rupp S., Sohn K., Hammerle H. Electrophoresis. 21:2000;2641.
86. Sreekumar A., Nyati M.K., Varambally S., Barrette T.R., Ghosh D., Lawrence T.S., Chinnaiyan A.M. Cancer Res. 61:2001;7585.
87. Hiller R., Laffer S., Harwanegg C., Huber M., Schmidt W.M., Twardosz A., Barletta B., Becker W.M., Blaser K., Breiteneder H., Chapman M., Crameri R., Duchene M., Ferreira F., Fiebig H., Hoffmann-Sommergruber K., King T.P., Kleber-Janke T., Kurup V.P., Lehrer S.B., Lidholm J., Muller U., Pini C., Reese G., Scheiner O., Scheynius A., Shen H.D., Spitzauer S., Suck R., Swoboda I., Thomas W., Tinghino R., Van Hage-Hamsten M., Virtanen T., Kraft D., Muller M.W., Valenta R. FASEB. J. 16:2002;414.
88. Kim T.E., Park S.W., Cho N.Y., Choi S.Y., Yong T.S., Nahm B.H., Lee S., Noh G. Exp. Mol. Med. 34:2002;152.
89. Samsonova J.V., Baxter G.A., Crooks S.R., Small A.E., Elliott C.T. Biosens. Bioelectron. 17:2002;523.
90. Huang R.P., Huang R., Fan Y., Lin Y. Anal. Biochem. 294:2001;55.
91. Paweletz C.P., Charboneau L., Bichsel V.E., Simone N.L., Chen T., Gillespie J.W., Emmert-Buck M.R., Roth M.J., Petricoin I.E., Liotta L.A. Oncogene. 20:2001;1981.
92. Knezevic V., Leethanakul C., Bichsel V.E., Worth J.M., Prabhu V.V., Gutkind J.S., Liotta L.A., Munson P.J., Petricoin E.F. III, Krizman D.B. Proteomics. 1:2001;1271.
93. Fang Y., Frutos A.G., Lahiri J. J. Am. Chem. Soc. 124:2002;2394.
94. Houseman B.T., Huh J.H., Kron S.J., Mrksich M. Nat. Biotechnol. 20:2002;270.
95. Zhu H., Bilgin M., Bangham R., Hall D., Casamayor A., Bertone P., Lan N., Jansen R., Bidlingmaier S., Houfek T., Mitchell T., Miller P., Dean R.A., Gerstein M., Snyder M. Science. 293:2001;2101.
96. Holt L.J., Bussow K., Walter G., Tomlinson I.M. Nucleic Acids Res. 28:2000;E72.
97. Kersten B., Feilner T., Kramer A., Wehrmeyer S., Possling A., Witt I., Zanor M.I., Stracke R., Lueking A., Kreutzberger J., Lehrach H., Cahill D.J. Plant Mol. Biol. 52:2003;999.
98. Schweitzer B., Wiltshire S., Lambert J., O'Malley S., Kukanskis K., Zhu Z., Kingsmore S.F., Lizardi P.M., Ward D.C. Proc. Natl. Acad. Sci. U.S.A. 97:2000;10113.
99. Wu X., Liu H., Liu J., Haley K.N., Treadway J.A., Larson J.P., Ge N., Peale F., Bruchez M.P. Nat. Biotechnol. 21:2003;41.
100. Schweitzer B., Kingsmore S.F. Curr. Opin. Biotechnol. 13:2002;14.
101. Brody E.N., Willis M.C., Smith J.D., Jayasena S., Zichi D., Gold L. Mol. Diagn. 4:1999;381.
102. Hamaguchi N., Ellington A., Stanton M. Anal. Biochem. 294:2001;126.
103. Li J.J., Fang X., Tan W. Biochem. Biophys. Res. Commun. 292:2002;31.
104. Nelson B.P., Liles M.R., Frederick K.B., Corn R.M., Goodman R.M. Environ. Microbiol. 4:2002;735.
105. Dare T.O., Davies H.A., Turton J.A., Lomas L., Williams T.C., York M.J. Electrophoresis. 23:2002;3241.
106. J. Hallborn, R. Carlsson, Biotech. Suppl. (2002) 30.
107. Smith D., Collins B.D., Heil J., Koch T.H. Mol. Cell Proteomics. 2:2003;11.
108. Peluso P., Wilson D.S., Do D., Tran H., Venkatasubbaiah M., Quincy D., Heidecker B., Poindexter K., Tolani N., Phelan M., Witte K., Jung L.S., Wagner P., Nock S. Anal. Biochem. 312:2003;113.
109. Kramer K., Fiedler M., Skerra A., Hock B. Biosens. Bioelectron. 17:2002;305.
110. Kukar T., Eckenrode S., Gu Y., Lian W., Megginson M., She J.X., Wu D. Anal. Biochem. 306:2002;50.