A tool for metabolic and regulatory pathways visual analysis

Proceedings of SPIE - The International Society for Optical Engineering

Volumn 5009, Issue , 2003, Pages 46-55

  Jourdan, F ^a   Melancon G ^a  

^a LIRMM   (France)

Author keywords

Gene expression; Graphs; Metabolic pathways; Navigation; Semi automated drawing; Visualization

Indexed keywords

COMPUTER VISION; GENES; METABOLISM; SEMANTICS;

METABOLIC PATHWAYS;

BIOMEDICAL ENGINEERING;

EID: 0242576481     PISSN: 0277786X     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1117/12.477524     Document Type: Conference Paper

References (13)

1. ExPASy, 1993. http://www.expasy.org.
2. M. Kanehisa, Post-genome Informatics, Oxford University Press, 2000.
3. P. Karp, M. Riley, M. Saier, and I. Paulsen, "The ecocyc and metacyc databases," 2000.
4. P. D. Karp and S. M. Paley, "Automated drawing of metabolic pathways," 1994.
5. A. P. M. R. Franz Brandenburg, Michael Forster and F. Schreiber, "Biopath," in GD'01, S. Verlag, ed., 2002.
6. M. Becker and I. Rojas, "A graph layout algorithm for drawing metabolic pathways," 2001.
7. R. T. Giuseppe Di Battista, Peter Eades and I. G. Tollis, Graph Drawing: Algorithms for the Visualization of Graphs., Prentice Hall, 1999.
8. M. Kaufmann and D. Wagner, Drawing Graphs, Springer, 2001.
9. I. Herman and M. S. Marshall, "GraphXML - an XML-based graph description format," in Graph Drawing, pp. 52-62, 2000.
10. M. S. Marshall, I. Herman, and G. Melançon, "An object-oriented design for graph visualization," Software Practice and Experience 31(8), pp. 739-756, 2001.
11. W3C, "Scalable vector graphics (svg) 1.0 specification," 2001. http://www.w3.org/TR/SVG/.
12. B. B. Bederson, J. Meyer, and L. Good, "Jazz: an extensible zoomable user interface graphics toolkit in Java," in UIST, pp. 171-180, 2000.
13. Apache, "Batik," 2000. http://xml.apache.org/batik/.