Brownian Dynamics Simulations of Ion Atmospheres Around Polyalanine and B-DNA: Effects of Biomolecular Dielectric

Biopolymers

Volumn 70, Issue 3, 2003, Pages 391-402

  Cerutti, David S ^a   Wong, Chung F ^a   McCammon, J Andrew ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Brownian dynamics simulation; Continuum solvent model; Dielectric boundary; Explicit ions; Ion atmosphere; Poisson equation

Indexed keywords

ALGORITHMS; BROWNIAN MOVEMENT; COMPUTER SIMULATION; CORRELATION METHODS; DIELECTRIC MATERIALS; ELECTROSTATICS; POISSON EQUATION; SOLVENTS;

BIOMOLECULAR DIELECTRICS;

DNA;

ALANINE; DNA; DNA B; POLYALANINE; UNCLASSIFIED DRUG;

ALGORITHM; ALPHA HELIX; ARTICLE; ATMOSPHERE; BASE PAIRING; BROWNIAN DYNAMICS; COMPUTER SIMULATION; CORRELATION ANALYSIS; DIELECTRIC CONSTANT; ELECTRIC POTENTIAL; ELECTRICITY; FINITE ELEMENT ANALYSIS; ION TRANSPORT; MATHEMATICAL COMPUTING; MOLECULAR BIOLOGY; MOLECULAR DYNAMICS; MOLECULAR MODEL; NONHUMAN; POISSON BOLTZMANN MODEL; POISSON DISTRIBUTION; SIMULATION; STRUCTURE ANALYSIS; WATER IMMERSION;

ALGORITHMS; COMPUTER SIMULATION; DNA; ELECTROCHEMISTRY; IONS; MODELS, CHEMICAL; PEPTIDES; PROTEIN STRUCTURE, SECONDARY;

EID: 0242467800     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/bip.10498     Document Type: Article

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