-
1
-
-
0015859467
-
Principles that govern the folding of protein chains
-
Anfinsen C. Principles that govern the folding of protein chains. Science 1973;181:223-230.
-
(1973)
Science
, vol.181
, pp. 223-230
-
-
Anfinsen, C.1
-
3
-
-
0026537987
-
The disulfide folding pathway of BPTI
-
Creighton T. The disulfide folding pathway of BPTI. Science 1992;256:111-114.
-
(1992)
Science
, vol.256
, pp. 111-114
-
-
Creighton, T.1
-
4
-
-
0025949415
-
Reexamination of the folding of BPTI: Predominance of native intermediates
-
Weismann J, Kim P. Reexamination of the folding of BPTI: Predominance of native intermediates. Science 1991;253:1386-1393.
-
(1991)
Science
, vol.253
, pp. 1386-1393
-
-
Weismann, J.1
Kim, P.2
-
5
-
-
0016792887
-
The two-disulphide intermediates and the folding pathway of reduced pancreatic trypsin inhibitor
-
Creighton T. The two-disulphide intermediates and the folding pathway of reduced pancreatic trypsin inhibitor. J Mol Biol 1975;95:167-169.
-
(1975)
J Mol Biol
, vol.95
, pp. 167-169
-
-
Creighton, T.1
-
6
-
-
0026666246
-
Kinetic role of nonnative species in the folding of bovine pancreatic trypsin inhibitor
-
Weismann J, Kim P. Kinetic role of nonnative species in the folding of bovine pancreatic trypsin inhibitor. PNAS 1992;89:9900-9904.
-
(1992)
PNAS
, vol.89
, pp. 9900-9904
-
-
Weismann, J.1
Kim, P.2
-
7
-
-
0023389936
-
Toward an understanding of the folding of ribonuclease a
-
Scheraga H, Konishi Y, Rothwarf D, Mui P. Toward an understanding of the folding of ribonuclease a. PNAS 1987;84:5740-5744.
-
(1987)
PNAS
, vol.84
, pp. 5740-5744
-
-
Scheraga, H.1
Konishi, Y.2
Rothwarf, D.3
Mui, P.4
-
8
-
-
0029028698
-
Modeling the role of disulfide bonds in protein folding: Entropic barriers and pathways
-
Camacho C, Thirumalai D. Modeling the role of disulfide bonds in protein folding: Entropic barriers and pathways. Proteins 1995;22:27-40.
-
(1995)
Proteins
, vol.22
, pp. 27-40
-
-
Camacho, C.1
Thirumalai, D.2
-
9
-
-
0028941444
-
Theoretical predictions of folding pathways using the proximity rule with application to BTPI
-
Camacho C, Thirumalai D. Theoretical predictions of folding pathways using the proximity rule with application to BTPI. PNAS 1995;92:1277-1281.
-
(1995)
PNAS
, vol.92
, pp. 1277-1281
-
-
Camacho, C.1
Thirumalai, D.2
-
10
-
-
0034697986
-
What can disulphide bond tell us about protein energetics, function and folding: Simulations and bioinformatics analysis
-
Abkevich V, Shakhnovich E. What can disulphide bond tell us about protein energetics, function and folding: Simulations and bioinformatics analysis. J Mol Biol 2000;300:975-985.
-
(2000)
J Mol Biol
, vol.300
, pp. 975-985
-
-
Abkevich, V.1
Shakhnovich, E.2
-
11
-
-
2242465042
-
Insights into specific problems in protein folding using simple concepts
-
Thirumalai D, Klimov D, Dima R. Insights into specific problems in protein folding using simple concepts. Adv Chem Phys 2002;120:35-77.
-
(2002)
Adv Chem Phys
, vol.120
, pp. 35-77
-
-
Thirumalai, D.1
Klimov, D.2
Dima, R.3
-
13
-
-
18344362394
-
On the use of classical statistical mechanics in the treatment of polymer chain conformations
-
Go N, Scheraga HA. On the use of classical statistical mechanics in the treatment of polymer chain conformations. Macromolecules 1976;9:535-542.
-
(1976)
Macromolecules
, vol.9
, pp. 535-542
-
-
Go, N.1
Scheraga, H.A.2
-
14
-
-
18344391877
-
Protein structures and optimal folding from a geometrical variational principle
-
Micheletti C, Banavar JR, Maritan A, Seno F. Protein structures and optimal folding from a geometrical variational principle. Phys Rev Lett 1999;82:3372-3375.
-
(1999)
Phys Rev Lett
, vol.82
, pp. 3372-3375
-
-
Micheletti, C.1
Banavar, J.R.2
Maritan, A.3
Seno, F.4
-
15
-
-
0033613165
-
A simple model for calculating the kinetics of protein folding from three-dimensional structures
-
Munoz V, Eaton W. A simple model for calculating the kinetics of protein folding from three-dimensional structures. Proc Natl Acad Sci USA 1999;96:11305-11310.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 11305-11310
-
-
Munoz, V.1
Eaton, W.2
-
16
-
-
0033613255
-
Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures
-
Alm E, Baker D. Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures. Proc Natl Acad Sci USA 1999;96:11305-11310.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 11305-11310
-
-
Alm, E.1
Baker, D.2
-
17
-
-
0033613131
-
A theoretical search for folding/unfolding nuclei in three-dimensional protein structures
-
Galzitskaya O, Finkelstein A. A theoretical search for folding/unfolding nuclei in three-dimensional protein structures. Proc Natl Acad Sci USA 1999;96:11299-11304.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 11299-11304
-
-
Galzitskaya, O.1
Finkelstein, A.2
-
18
-
-
0034719580
-
Role of secondary motifs in fast folding polymers: A dynamical variational principle
-
Maritan A, Micheletti C, Banavar JR. Role of secondary motifs in fast folding polymers: A dynamical variational principle. Phys Rev Lett 2000;84:3009-3012.
-
(2000)
Phys Rev Lett
, vol.84
, pp. 3009-3012
-
-
Maritan, A.1
Micheletti, C.2
Banavar, J.R.3
-
19
-
-
0034604105
-
A surprising simplicity to protein folding
-
Baker D. A surprising simplicity to protein folding. Nature 2000;405:39-42.
-
(2000)
Nature
, vol.405
, pp. 39-42
-
-
Baker, D.1
-
20
-
-
0034685604
-
Topological and energetic factors: What determines the structural details of the transition state ensemble and en-route intermediates for protein folding? An investigation for small globular proteins
-
Clementi C, Nymeyer H, Onuchic J. Topological and energetic factors: What determines the structural details of the transition state ensemble and en-route intermediates for protein folding? An investigation for small globular proteins. J Mol Biol 2000;298:937-953.
-
(2000)
J Mol Biol
, vol.298
, pp. 937-953
-
-
Clementi, C.1
Nymeyer, H.2
Onuchic, J.3
-
21
-
-
0034687802
-
Deciphering the folding kinetics of transmembrane helical proteins
-
Orlandini E, Seno F, Banavar J, Laio A, Maritan A. Deciphering the folding kinetics of transmembrane helical proteins. PNAS 2000;97:14229-14234.
-
(2000)
PNAS
, vol.97
, pp. 14229-14234
-
-
Orlandini, E.1
Seno, F.2
Banavar, J.3
Laio, A.4
Maritan, A.5
-
22
-
-
0035371215
-
Molecular dynamics studies of HIV-1 protease: Drug resistance and folding pathways
-
Cecconi F, Micheletti C, Carloni P, Maritan A. Molecular dynamics studies of HIV-1 protease: Drug resistance and folding pathways. Proteins 2000;43:365-372.
-
(2000)
Proteins
, vol.43
, pp. 365-372
-
-
Cecconi, F.1
Micheletti, C.2
Carloni, P.3
Maritan, A.4
-
23
-
-
0034319711
-
Sequencing of folding events in go-type proteins
-
Hoang TX, Cieplak M. Sequencing of folding events in go-type proteins. J Chem Phys 2000;113:8319-8328.
-
(2000)
J Chem Phys
, vol.113
, pp. 8319-8328
-
-
Hoang, T.X.1
Cieplak, M.2
-
24
-
-
0033598375
-
Interpreting the folding kinetics of helical proteins
-
Zhou YQ, Karplus M. Interpreting the folding kinetics of helical proteins. Nature 1999;401:400-403.
-
(1999)
Nature
, vol.401
, pp. 400-403
-
-
Zhou, Y.Q.1
Karplus, M.2
-
25
-
-
0000870658
-
Exploring the space of protein folding Hamiltonians: The balance of forces in a minimalist beta-barrel model
-
Shea J, Nochomovitz YD, Guo Z.Y., Brooks C.L. Exploring the space of protein folding Hamiltonians: The balance of forces in a minimalist beta-barrel model. J Chem Phys 1998;109:2895-2903.
-
(1998)
J Chem Phys
, vol.109
, pp. 2895-2903
-
-
Shea, J.1
Nochomovitz, Y.D.2
Guo, Z.Y.3
Brooks, C.L.4
-
26
-
-
0035576033
-
Speeding protein folding beyond the go model: How a little frustration sometimes helps
-
Plotkin S. Speeding protein folding beyond the go model: How a little frustration sometimes helps. Proteins 2001;45:337-345.
-
(2001)
Proteins
, vol.45
, pp. 337-345
-
-
Plotkin, S.1
-
27
-
-
0027287309
-
-
Scaccheri E, Nitti G, Valsasina B, Orsini G, Visco C, Ferreia M, Sawyer RT, Sarmientos P. Eur J Biochem 1993;214:295-304.
-
(1993)
Eur J Biochem
, vol.214
, pp. 295-304
-
-
Scaccheri, E.1
Nitti, G.2
Valsasina, B.3
Orsini, G.4
Visco, C.5
Ferreia, M.6
Sawyer, R.T.7
Sarmientos, P.8
-
28
-
-
0028017504
-
Structure of the rgd protein dicorsin-conserved motifs and distinct function in leech proteins that affect blood-clotting
-
Krezel AM, Wagner G, Seymourulmer J, Lazarus RA. Structure of the rgd protein dicorsin-conserved motifs and distinct function in leech proteins that affect blood-clotting. Science 1994;264:1944-1947.
-
(1994)
Science
, vol.264
, pp. 1944-1947
-
-
Krezel, A.M.1
Wagner, G.2
Seymourulmer, J.3
Lazarus, R.A.4
-
29
-
-
0029392391
-
A disulfide-reinforced structural scaffold shared by small proteins with diverse functions
-
Lin S, Nussinov R. A disulfide-reinforced structural scaffold shared by small proteins with diverse functions. Nat Struct Biol 1995;2:835-837.
-
(1995)
Nat Struct Biol
, vol.2
, pp. 835-837
-
-
Lin, S.1
Nussinov, R.2
-
30
-
-
0031764172
-
Leech antihemostatic proteins share the T-knot scaffold, a disulfide-reinforced motif
-
Ascenzi P, Bolognesi M, Catalucci D, Pascarella S, Ruoppolo M, Rizzi M. Leech antihemostatic proteins share the T-knot scaffold, a disulfide-reinforced motif. Biol Chem 1998;379:1387-1389.
-
(1998)
Biol Chem
, vol.379
, pp. 1387-1389
-
-
Ascenzi, P.1
Bolognesi, M.2
Catalucci, D.3
Pascarella, S.4
Ruoppolo, M.5
Rizzi, M.6
-
31
-
-
0025947075
-
Characterization, stability and refolding of recombinant hirudin
-
Otto A, Seckler R. Characterization, stability and refolding of recombinant hirudin. Eur J Biochem 1991;202:67-73.
-
(1991)
Eur J Biochem
, vol.202
, pp. 67-73
-
-
Otto, A.1
Seckler, R.2
-
32
-
-
0027434035
-
The disulfide folding pathway of hirudin elucidated by stop/go folding experiments
-
Chatrenet B, Chang J. The disulfide folding pathway of hirudin elucidated by stop/go folding experiments. J Biol Chem 1993;268:20988-20996.
-
(1993)
J Biol Chem
, vol.268
, pp. 20988-20996
-
-
Chatrenet, B.1
Chang, J.2
-
34
-
-
0031048902
-
Kinetic studies of the regeneration of recombinant hirudin variant 1 with oxidized and reduced dithiothreitol
-
Thannhauser T, Rothwarf D, Scheraga H. Kinetic studies of the regeneration of recombinant hirudin variant 1 with oxidized and reduced dithiothreitol. Biochemistry 1997;36:2154-2165.
-
(1997)
Biochemistry
, vol.36
, pp. 2154-2165
-
-
Thannhauser, T.1
Rothwarf, D.2
Scheraga, H.3
-
35
-
-
0031172351
-
NMR solution structure of a novel hirudin variant hm2, n-terminal 1-47 and n64 → v + g mutant
-
Nicastro G, Baumer L, Bolis G, Tato M. NMR solution structure of a novel hirudin variant hm2, n-terminal 1-47 and n64 → v + g mutant. Biopolymers 1997;41:731-749.
-
(1997)
Biopolymers
, vol.41
, pp. 731-749
-
-
Nicastro, G.1
Baumer, L.2
Bolis, G.3
Tato, M.4
-
36
-
-
0019569599
-
Non interacting local structures: Model of folding and unfolding transition in globular protein: I. Formalism
-
Go N, Abe H. Non interacting local structures: Model of folding and unfolding transition in globular protein: I. Formalism. Biopolymers 1981;20:991-1011.
-
(1981)
Biopolymers
, vol.20
, pp. 991-1011
-
-
Go, N.1
Abe, H.2
-
37
-
-
0026785519
-
Contact potential that recognizes the correct folding of globular proteins
-
Maiorov VN, Crippen GM. Contact potential that recognizes the correct folding of globular proteins. J Mol Biol 1992;227:876-888.
-
(1992)
J Mol Biol
, vol.227
, pp. 876-888
-
-
Maiorov, V.N.1
Crippen, G.M.2
-
38
-
-
0029909384
-
An iterative method for extracting energy-like quantities from protein structures
-
Thomas PD, Dill KA. An iterative method for extracting energy-like quantities from protein structures. Proc Natl Acad Sci U. S. A. 1996;93:11628-11633.
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, pp. 11628-11633
-
-
Thomas, P.D.1
Dill, K.A.2
-
39
-
-
0035865950
-
Learning effective amino acid interactions through iterative stochastic techniques
-
Micheletti C, Seno F, Banavar JR, Maritan A. Learning effective amino acid interactions through iterative stochastic techniques. Proteins 2001;42:422-431.
-
(2001)
Proteins
, vol.42
, pp. 422-431
-
-
Micheletti, C.1
Seno, F.2
Banavar, J.R.3
Maritan, A.4
-
40
-
-
0035807949
-
Protein threading by learning
-
Chang I, Cieplak M, Dima R, Banavar J, Maritan A. Protein threading by learning. Proc Natl Acad Sci U. S. A. 2001;98:14350-14355.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 14350-14355
-
-
Chang, I.1
Cieplak, M.2
Dima, R.3
Banavar, J.4
Maritan, A.5
-
41
-
-
16144367349
-
Monte Carlo methods for the self-avoiding walk
-
Sokal AD. Monte Carlo methods for the self-avoiding walk. Nuclear Phys 1996;B47:172-179.
-
(1996)
Nuclear Phys
, vol.B47
, pp. 172-179
-
-
Sokal, A.D.1
-
43
-
-
0024498476
-
Solution structure of recombinant hirudin and the lys-47→glu mutant: A nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing study
-
Folkers P, Clore G, Driscoll P, Dodt J, Koheler S, Gronenborn A. Solution structure of recombinant hirudin and the lys-47→glu mutant: A nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing study. Biochemistry 1989;28: 2601-2617.
-
(1989)
Biochemistry
, vol.28
, pp. 2601-2617
-
-
Folkers, P.1
Clore, G.2
Driscoll, P.3
Dodt, J.4
Koheler, S.5
Gronenborn, A.6
-
44
-
-
0027055006
-
Impact of protein-protein contacts on the conformation of thrombin-bound hirudin studied by comparison with the nuclear magnetic resonance solution structure of hirudin (1-51)
-
Szyperski T, Guntert P. Impact of protein-protein contacts on the conformation of thrombin-bound hirudin studied by comparison with the nuclear magnetic resonance solution structure of hirudin (1-51). J Mol Biol 1992;228:1206-1211.
-
(1992)
J Mol Biol
, vol.228
, pp. 1206-1211
-
-
Szyperski, T.1
Guntert, P.2
-
45
-
-
0031453963
-
Olderado: On-line database of ensemble representatives and domains
-
Kelley L, Sutcliffe M. Olderado: On-line database of ensemble representatives and domains. Protein Sci 1997;12:2628-2630.
-
(1997)
Protein Sci
, vol.12
, pp. 2628-2630
-
-
Kelley, L.1
Sutcliffe, M.2
-
46
-
-
0029987862
-
Energy functions that discriminate X-ray and near-native folds from well-constructed decoys
-
Park B, Levitt M. Energy functions that discriminate X-ray and near-native folds from well-constructed decoys. J Mol Biol 1996;258:367-392.
-
(1996)
J Mol Biol
, vol.258
, pp. 367-392
-
-
Park, B.1
Levitt, M.2
-
47
-
-
0001193711
-
The effects of internal constraints on the configurations of chain molecules
-
Chan HS, Dill KA. The effects of internal constraints on the configurations of chain molecules. J Chem Phys 1990;92:3118-3135.
-
(1990)
J Chem Phys
, vol.92
, pp. 3118-3135
-
-
Chan, H.S.1
Dill, K.A.2
-
48
-
-
0034310589
-
Energetic components of cooperative protein folding
-
Kaya H, Chan HS. Energetic components of cooperative protein folding. Phys Rev Lett 2000;85:4823-4826.
-
(2000)
Phys Rev Lett
, vol.85
, pp. 4823-4826
-
-
Kaya, H.1
Chan, H.S.2
-
49
-
-
0034284060
-
Polymer principles of protein calorimetric two-state cooperativity
-
Kaya H, Chan HS. Polymer principles of protein calorimetric two-state cooperativity. Proteins 2000;40:637-661.
-
(2000)
Proteins
, vol.40
, pp. 637-661
-
-
Kaya, H.1
Chan, H.S.2
-
50
-
-
0034753250
-
Role of native-state topology in the stabilization of intracellular antibodies
-
Settanni G, Cattaneo A, Maritan A. Role of native-state topology in the stabilization of intracellular antibodies. Biophys J 2001;81:2935-2945.
-
(2001)
Biophys J
, vol.81
, pp. 2935-2945
-
-
Settanni, G.1
Cattaneo, A.2
Maritan, A.3
-
51
-
-
0034284383
-
Recurrent oligomers in proteins-an optimal scheme reconciling accurate and concise backbone representations in automated folding and design studies
-
Micheletti C, Seno F, Maritan A. Recurrent oligomers in proteins-an optimal scheme reconciling accurate and concise backbone representations in automated folding and design studies. Proteins 2000;40:662-674.
-
(2000)
Proteins
, vol.40
, pp. 662-674
-
-
Micheletti, C.1
Seno, F.2
Maritan, A.3
-
52
-
-
0039924671
-
Monte-Carlo study of the interacting self-avoiding walk in three dimensions
-
Tesi M, van Rensburg EJ, Orlandini E, Whittington S. Monte-Carlo study of the interacting self-avoiding walk in three dimensions. J Stat Phys 1996;82:155-181.
-
(1996)
J Stat Phys
, vol.82
, pp. 155-181
-
-
Tesi, M.1
Van Rensburg, E.J.2
Orlandini, E.3
Whittington, S.4
-
53
-
-
33646987405
-
Optimized Monte Carlo data analysis
-
Ferrenberg AM, Swendsen RH. Optimized Monte Carlo data analysis. Phys Rev Lett 1989;63:1195-1198.
-
(1989)
Phys Rev Lett
, vol.63
, pp. 1195-1198
-
-
Ferrenberg, A.M.1
Swendsen, R.H.2
|