Identifying Lychee (Litchi chinensis Sonn.) Cultivars and their Genetic Relationships Using Intersimple Sequence Repeat (ISSR) Markers

Journal of the American Society for Horticultural Science

Volumn 128, Issue 6, 2003, Pages 838-845

  Degani, Chemda ^a,b   Deng, Jiusheng ^a   Beiles, Avigdor ^a,c   El Batsri, Ruth ^a,b   Goren, Moshe ^a,b   Gazit, Shmuel ^a,d  

^a VOLCANI CENTER   (Israel)

^b Guangxi Polytechnic   (China)

^c UNIVERSITY OF HAIFA   (Israel)

^d HEBREW UNIVERSITY OF JERUSALEM   (Israel)

Author keywords

Anchored microsatellites; DNA fingerprinting; Germplasm; Polymorphism

Indexed keywords

EMBRYOPHYTA; LITCHI CHINENSIS;

EID: 0242276987     PISSN: 00031062     EISSN: None     Source Type: Journal    
DOI: 10.21273/jashs.128.6.0838     Document Type: Article

References (56)

1. Ajibade, S.R., N.F. Weeden, and S.M. Chite. 2000. Intersimple sequence repeat analysis of genetic relationships in the genus Vigna. Euphytica 111:47-55.
2. Akkaya, M.S., A.A. Bhagwat, and P.B. Cregan. 1992. Length polymorphism of simple sequence repeat DNA in soybean. Genetics 132: 1131-1139.
3. Aradhya, M.K., F. Zee, and R.M. Manshardt. 1995. Isozyme variation in lychee (Litchi chinensis Sonn.). Scientia Hort. 63:21-35.
4. Batten, D. 1984. Lychee varieties. Agfact H6. 2.7 1-15. Dept. Agr., New South Wales.
5. Blair, M.W., O. Panaud, and S.R. McCouch. 1999. Intersimple sequence repeat (ISSR) amplifications for analysis of microsatellite motif frequency and fingerprinting in rice. Theor. Appl. Genet. 98:780-792.
6. Cavaletto, C.G. 1980. Lychee, p. 469-478. In: S. Nagy and P.E. Shaw (eds.). Tropical and subtropical fruits. AV1. Westport. Conn.
7. Chapman, K.R. 1984. Sapindacea: Lychee, p. 179-191. In: P.E. Page (ed.). Tropical tree fruits for Australia. Queensland Dept. Primary Industries, Brisbane.
8. Degani, C., A. Beiles, R. El-Batsri, M. Goren, and S. Gazit. 1995. Identifying lychee cultivars by isozyme analysis. J. Amer. Soc. Hort. Sci. 120:307-312.
9. Doyle, J.J. and J.L. Doyle. 1990. Isolation of plant DNA from fresh tissue. Focus 12:13-15.
10. Fang, D.Q. and M.L. Roose. 1997. Identification of closely related citrus cultivars with intersimple sequence repeat markers. Theor. Appl. Genet. 95:408-117.
11. Fang, D.Q., R.R. Krueger, and M.L. Roose. 1998. Phylogenetic relationships among selected citrus germplasm accessions revealed by intersimple sequence repeat (ISSR) markers. J. Amer. Soc. Hort. Sci. 123:612-617.
12. Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using bootstrap. Evolution 39:783-791.
13. Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Dept. Genet., Univ. Wash., Seattle.
14. Felsenstein, J. 2001. PHYLIP (Phylogeny Inference Package) version 3.6α 2. Distributed by the author. Dept. Genet., Univ. Wash., Seattle.
15. Galan-Sauco, V. and U.G. Menini. 1989. Litchi cultivation. FAO Plant Prod. Protection Paper 83.
16. Gazit, S. and M. Goren. 1997. The growth of lychee in China (in Hebrew). Alon Hanotea 51:86-89.
17. Gilbert, J.E., R.V. Lewis, M.J. Wilkinson, and P.D.S. Caligari. 1999. Developing an appropriate strategy to assess genetic variability in plant germplasm collections. Theor. Appl. Genet. 98:1125-1131.
18. Goren, M., E. Tomer, and S. Gazit. 2001. Litchi cultivars in Israel. p. 129-133. Proc. 1st Intl. Symp. Litchi and Longan, Guangzhou, China.
19. Groff, G.W. 1921. The lychee and lungan. Orange Judd. New York.
20. Groff, G.W. 1948. Additional notes upon the history of the Brewster lychee. Proc. Fla. State Hort. Soc. 64:285-289.
21. Goulao, L., L. Monte-Corvo, and C.M. Oliveira. 2001. Phenetic characterization of plum cultivars by high multiplex ratio markers: Amplified fragment length polymorphisms and intersimple sequence repeats. J. Amer Soc. Hort. Sci. 126:72-77.
22. Hallden, C.M., M. Hansen, N.O. Nilsson, A. Hjerdin, and T. Sall. 1996. Competition as a source of errors in RAPD analysis. Theor. Appl. Genet. 93:1185-1192.
23. Hamilton, R.A. and W. Yee. 1970. Lychee cultivars in Hawaii. Proc. Fla. State Hort. Soc. 83:322-325.
24. Knight, Jr., R.J. 1980. Origin and world importance of tropical and subtropical fruit crops, p. 1-120. In: S. Nagy and P.E. Shaw (eds.). Tropical and subtropical fruits. AVI, Westport. Conn.
25. Knight, Jr., R.J. 2001. The lychee's history and current status in Florida, p. 41-14. In: Proceedings of the First International Symposium on Litchi and Longan, Guangzhou, China.
26. Lagercrantz, U., H. Ellegren, and L. Andersson. 1993. The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucl. Acids Res. 21:1111-1115.
27. Lanham, P.G. and R.M. Brennan. 1998. Characterization of the genetic resources of red currant (Ribes rubrum: subg. Ribesia) using anchored microsatellite markers. Theor. Appl. Genet. 96:917-921.
28. Maity, S.C. and S.K. Mitra. 1990. Litchi, p. 420-468. In: T.K. Bose and S.K. Mitra (eds.). Fruits: Tropical and subtropical. Naya Prokash, India.
29. Martin, J.P. and M.D. Sanchez-Yelamo. 2000. Genetic relationships among species of the genus Diplotaxis (Brassicaceae) using intersimple repeat markers. Theor. Appl. Genet. 101:1234-1241.
30. McDade, L.A. 1997. Hybrids and phylogenetic systematic III. Comparison with distance methods. Syst. Bot. 22:669-683.
31. Menzel, C.M. and D.R. Simpson. 1990. Performance and improvement of lychee cultivars: A review. Fruit Var. J. 44:197-215.
32. Menzel, C.M. and D.R. Simpson. 1991. A description of lychee cultivars. Fruit Var. J. 45:45-56.
33. Moreno, S., P. Martin, and J.M. Ortiz. 1998. Intersimple sequence repeats PCR for characterization of closely related grapevine germplasm. Euphytica 101:117-125.
34. Morton, J.F. 1987. Fruits of warm climates. Creative Resource Systems Inc., Winterville, N.C.
35. Nei, M. 1972. Genetic distance between populations. Amer. Naturalist 106:283-298.
36. Nei, M. and W.H. Li. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA 76:5269-5273.
37. Nielsen, G. 1985. The use of isozymes as probes to identify and label plant varieties and cultivars, p. 1-32. In: M.C. Ratazzi, J.G. Scandalios and G.S. Whitt (eds.). Isozymes: Current topics in biological and medical research. vol. 12. Alan R. Liss. Inc. New York.
38. Oppenheimer, C. 1947. The acclimatisation of new tropical and subtropical fruit trees in Palestine. Agr. Res. Sta., Rehovot. Bul. 44.
39. Pandey, R.M. and H.C. Sharma. 1989. The Litchi. Indian Council Agr. Res., New Delhi.
40. Pomology Research Institute, Guangdong Academy of Agricultural Science. 1985. An album of Guangdong litchi varieties in full color. Pomol. Res. Inst., Guangdong Acad. Agr. Sci., China.
41. Pomology Research Institute. Fujian Academy of Agricultural Science. 1990. An album of Fujian litchi varieties in full color. Pomol. Res. Inst., Fujian Acad. Agr. Sci., China.
42. Prevost, A. and M.J. Wilkinson. 1999. A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theor. Appl. Genet. 98:107-112.
43. Rowland, L.J. and B. Nguyen. 1993. Use of PEG for purification of DNA from leaf tissue of woody plants. BioTechniques 14:735-736.
44. Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
45. Sambrook, J., E.F. Fritsch, and T. Maniatis. 1989. Molecular cloning: A laboratory manual. 2nd ed. Cold Spring Harbor Lab., Cold Spring Harbor, N.Y.
46. Singh, L.B. and U.P. Singh. 1954. The Litchi. Superintendent, Printing and Stationery, Uttar Pradesh, India.
47. Storey, W.B. 1973. The lychee. Calif. Avocado Soc. Yrbk. 56:75-86.
48. Subhadrabandhu, S. 1990. Lychee and longan cultivation in Thailand. Rumthai Publication Bangkok, Thailand.
49. Tautz, D. and M. Renz. 1984. Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucl. Acids Res. 12: 4127-4138.
50. Wang, Z., J.L. Weber, G. Zhong, and S.D. Tanksley. 1994. Survey of plant short random DNA repeats. Theor. Appl. Genet. 88:1-6.
51. Watson, B.J. 1983. Lychee-cultivar names. Queensland Dept. Primary Ind. Farm note F36.
52. Weir, B.S. 1996. Genetic data analysis II. Sinauer Assoc., Inc. Publ., Sunderland, Mass.
53. Winston, E.C. and P.J. O'Farrell. 1993. Evaluation of lychee (Litchi chinensis Sonn.) cultivars on the Atherton Tableland of North Queensland. Fruit Var. J. 47:83-91.
54. Zee, F.T.P., H.T. Chan, Jr., and C. Yen. 1998. Lychee, longan, rambutan and pulasan, p. 290-335. In: P.E. Shaw, H.T. Chan, and S. Nagy (eds.). Tropical and subtropical fruits. AgScience, Inc., Fla.
55. Zhang, Z., P. Yuan, B. Wang, Y. Qiu, and J. Li. 1997. Litchi pictorial narration of cultivation. Z. Zhang (ed.). Pomol. Res. Inst., Guangdong Acad. Agr. Sci., China.
56. Zietkicwicz, E., A. Rafalski, and D. Labuda. 1994. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20:176-183.