The Xenopus tropicalis genome project

Current Genomics

Volumn 4, Issue 8, 2003, Pages 645-652

  Richardson, Paul M ^a   Chapman, Jarrod ^a  

^a DOE JOINT GENOME INSTITUTE   (United States)

Author keywords

EST; Genome; Sequencing; Xenopus

Indexed keywords

COMPLEMENTARY DNA; CONTIG;

AMPHIBIA; BACTERIAL ARTIFICIAL CHROMOSOME; CIONA INTESTINALIS; DNA LIBRARY; EXON; EXPRESSED SEQUENCE TAG; GENE FUNCTION; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC SCREENING; HUMAN; MEDICAL GENETICS; MEDICAL RESEARCH; MOLECULAR CLONING; MOUSE; NONHUMAN; PROMOTER REGION; PUFFER FISH; REVIEW; SEQUENCE ANALYSIS; UNITED STATES; XENOPUS; XENOPUS TROPICALIS;

AMPHIBIA; BACTERIA (MICROORGANISMS); CIONA; CIONA INTESTINALIS; JUGLANS; REPTILIA; TAKIFUGU; TAKIFUGU RUBRIPES; TETRAODONTIDAE; XENOPUS TROPICALIS;

EID: 0142185263     PISSN: 13892029     EISSN: None     Source Type: Journal    
DOI: 10.2174/1389202033490088     Document Type: Review

References (11)

1. Aparicio, S., Chapman, J., Stupka, E., Putnam, N., Chia, J. M., Dehal, P., Christoffels, A., Rash, S., Hoon, S., Smit, A., Gelpke, M. D., Roach, J., Oh, T., Ho, I. Y., Wong, M., Detter, C., Verhoef, F., Predki, P., Tay, A., Lucas, S., Richardson, P., Smith, S. F., Clark, M. S., Edwards, Y. J., Doggett, N., Zharkikh, A., Tavtigian, S. V., Pruss, D., Barnstead, M., Evans, C., Baden, H., Powell, J., Glusman, G., Rowen, L., Hood, L., Tan, Y. H., Elgar, G., Hawkins, T., Venkatesh, B., Rokhsar, D. and Brenner, S. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science, 2002, 297: 1301-1310.
2. Dehal, P., Satou, Y., Campbell, R. K., Chapman, J., Degnan, B., De Tomaso, A., Davidson, B., Di Gregorio, A., Gelpke, M., Goodstein, D. M., Harafuji, N., Hastings, K. E., Ho, I., Hotta, K., Huang, W., Kawashima, T., Lemaire, P., Martinez, D., Meinertzhagen, I. A., Necula, S., Nonaka, M., Putnam, N., Rash, S., Saiga, H., Satake, M., Terry, A., Yamada, L., Wang, H. G., Awazu, S., Azumi, K., Boore, J., Branno, M., Chin-Bow, S., DeSantis, R., Doyle, S., Francino, P., Keys, D. N., Haga, S., Hayashi, H., Hino, K., Imai, K. S., Inaba, K., Kano, S., Kobayashi, K., Kobayashi, M., Lee, B. I., Makabe, K. W., Manohar, C., Matassi, G., Medina, M., Mochizuki, Y., Mount, S., Morishita, T., Miura, S., Nakayama, A., Nishizaka, S., Nomoto, H., Ohta, F., Oishi, K., Rigoutsos, I., Sano, M., Sasaki, A., Sasakura, Y., Shoguchi, E., Shin-i, T., Spagnuolo, A., Stainier, D., Suzuki, M. M., Tassy, O., Takatori, N., Tokuoka, M., Yagi, K., Yoshizaki, F., Wada, S., Zhang, C., Hyatt, P. D., Larimer, F., Detter, C., Doggett, N., Glavina, T., Hawkins, T., Richardson, P., Lucas, S., Kohara, Y., Levine, M., Satoh, N. and Rokhsar, D. S. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science, 2002, 298: 2157-2167.
3. Waterston, R. H., Lindblad-Toh, K., Birney, E., Rogers, J., Abril, J. F., Agarwal, P., Agarwala, R., Ainscough, R., Alexandersson, M., An, P., Antonarakis, S. E., Attwood, J., Baertsch, R., Bailey, J., Barlow, K., Beck, S., Berry, E., Birren, B., Bloom, T., Bork, P., Botcherby, M., Bray, N., Brent, M. R., Brown, D. G., Brown, S. D., Bult, C., Burton, J., Butler, J., Campbell, R. D., Carninci, P., Cawley, S., Chiaromonte, F., Chinwalla, A. T., Church, D. M., Clamp, M., Clee, C., Collins, F. S., Cook, L. L., Copley, R. R., Coulson, A., Couronne, O., Cuff, J., Curwen, V., Cutts, T., Daly, M., David, R., Davies, J., Delehaunty, K. D., Deri, J., Dermitzakis, E. T., Dewey, C., Dickens, N. J., Diekhans, M., Dodge, S., Dubchak, I., Dunn, D. M., Eddy, S. R., Elnitski, L., Emes, R. D., Eswara, P., Eyras, E., Felsenfeld, A., Fewell, G. A., Flicek, P., Foley, K., Frankel, W. N., Fulton, L. A., Fulton, R. S., Furey, T. S., Gage, D., Gibbs, R. A., Glusman, G., Gnerre, S., Goldman, N., Goodstadt, L., Grafham, D., Graves, T. A., Green, E. D., Gregory, S., Guigo, R., Guyer, M., Hardison, R. C., Haussler, D., Hayashizaki, Y., Hillier, L. W., Hinrichs, A., Hlavina, W., Holzer, T., Hsu, F., Hua, A., Hubbard, T., Hunt, A., Jackson, I., Jaffe, D. B., Johnson, L. S., Jones, M., Jones, T. A., Joy, A., Kamal, M., et al. Initial sequencing and comparative analysis of the mouse genome. Nature, 2002, 420: 520-562.
4. Klein, S. L., Strausberg, R. L., Wagner, L., Pontius, J., Clifton, S. W. and Richardson, P. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Dev. Dyn., 2002, 225: 384-391.
5. Hirsch, N., Zimmerman, L. B. and Grainger, R.M. Xenopus, the next generation: X. tropicalis genetics and genomics. Dev. Dyn., 2002, 225: 422-433.
6. Hirsch, N., Zimmerman, L. B., Gray, J., Chae, J., Curran, K. L., Fisher, M., Ogino, H. and Grainger, R. M. Xenopus tropicalis transgenic lines and their use in the study of embryonic induction. Dev. Dyn., 2002, 225: 522-535.
7. Khokha, M. K., Chung, C., Bustamante, E. L., Gaw, L. W., Trott, K. A., Yeh, J., Lim, N., Lin, J. C., Taverner, N., Amaya, E., Papalopulu, N., Smith, J. C., Zorn, A. M., Harland, R. M. and Grammer, T. C. Techniques and probes for the study of Xenopus tropicalis development. Dev. Dyn., 2002, 225: 499-510.
8. Amaya, E., Offield, M. F. and Grainger, R. M.,Frog genetics: Xenopus tropicalis jumps into the future. Trends Genet., 1998, 14: 253-255.
9. Thiebaud, C. H. and Fischberg, M. DNA content in the genus Xenopus. Chromosoma, 1977, 59: 253-257.
10. Ewing, B. and Green, P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res., 1998, 8: 186-194.
11. Detter, J. C., Jett, J. M., Lucas, S. M., Dalin, E., Arellano, A. R., Wang, M., Nelson, J. R., Chapman, J., Lou, Y., Rokhsar, D., Hawkins, T. L. and Richardson, P. M. Isothermal strand-displacement amplification applications for high-throughput genomics. Genomics, 2002, 80: 691-698.